EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000039302 (Gene tree)
Gene ID: 100730739
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 3259 bases
Position: chrDS562880.1:1176700-1179958
Accession: 100730739
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000025200	LSM	PF01423.22	6.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000035935	LSM10-201	1048	XM_005004209	ENSCPOP00000025200	123 (aa)	XP_005004266	A0A286XIA4

Gene Model

Click here to download ENSCPOG00000039302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000039302's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000039302	LSM10	55	31.429	ENSCPOG00000021053	LSM2	74	31.429
ENSCPOG00000039302	LSM10	60	33.784	ENSCPOG00000004679	SNRPD1	84	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000039302	LSM10	100	91.870	ENSG00000181817	LSM10	100	91.870	Homo_sapiens
ENSCPOG00000039302	LSM10	100	91.870	ENSAMEG00000019854	LSM10	100	91.870	Ailuropoda_melanoleuca
ENSCPOG00000039302	LSM10	94	68.103	ENSACIG00000015420	oscp1a	77	68.103	Amphilophus_citrinellus
ENSCPOG00000039302	LSM10	90	65.766	ENSAOCG00000015607	LSM10	86	65.766	Amphiprion_ocellaris
ENSCPOG00000039302	LSM10	96	68.644	ENSAOCG00000015618	LSM10	98	68.644	Amphiprion_ocellaris
ENSCPOG00000039302	LSM10	96	68.644	ENSAOCG00000014654	-	98	68.644	Amphiprion_ocellaris
ENSCPOG00000039302	LSM10	96	68.644	ENSAPEG00000021845	-	98	68.644	Amphiprion_percula
ENSCPOG00000039302	LSM10	90	65.766	ENSAPEG00000021851	LSM10	86	65.766	Amphiprion_percula
ENSCPOG00000039302	LSM10	93	64.912	ENSATEG00000006310	oscp1a	84	64.912	Anabas_testudineus
ENSCPOG00000039302	LSM10	100	66.667	ENSACAG00000001231	LSM10	100	66.667	Anolis_carolinensis
ENSCPOG00000039302	LSM10	98	90.833	ENSANAG00000031489	-	98	90.833	Aotus_nancymaae
ENSCPOG00000039302	LSM10	100	91.057	ENSANAG00000018759	-	100	91.057	Aotus_nancymaae
ENSCPOG00000039302	LSM10	96	67.797	ENSACLG00000004728	oscp1a	96	67.797	Astatotilapia_calliptera
ENSCPOG00000039302	LSM10	96	69.492	ENSAMXG00000025301	oscp1a	98	69.492	Astyanax_mexicanus
ENSCPOG00000039302	LSM10	98	93.333	ENSBTAG00000024096	LSM10	98	93.333	Bos_taurus
ENSCPOG00000039302	LSM10	100	90.244	ENSCJAG00000044880	LSM10	100	90.244	Callithrix_jacchus
ENSCPOG00000039302	LSM10	100	93.496	ENSCAFG00000003382	LSM10	100	93.496	Canis_familiaris
ENSCPOG00000039302	LSM10	100	93.496	ENSCAFG00020008920	LSM10	100	93.496	Canis_lupus_dingo
ENSCPOG00000039302	LSM10	98	93.333	ENSCHIG00000009398	LSM10	98	93.333	Capra_hircus
ENSCPOG00000039302	LSM10	100	100.000	ENSCAPG00000012567	LSM10	100	100.000	Cavia_aperea
ENSCPOG00000039302	LSM10	100	91.057	ENSCCAG00000018913	-	100	91.057	Cebus_capucinus
ENSCPOG00000039302	LSM10	98	90.833	ENSCCAG00000008378	-	98	90.833	Cebus_capucinus
ENSCPOG00000039302	LSM10	100	91.057	ENSCATG00000006589	LSM10	100	91.057	Cercocebus_atys
ENSCPOG00000039302	LSM10	100	97.561	ENSCLAG00000008633	LSM10	100	97.561	Chinchilla_lanigera
ENSCPOG00000039302	LSM10	100	91.057	ENSCSAG00000000134	LSM10	100	91.057	Chlorocebus_sabaeus
ENSCPOG00000039302	LSM10	100	91.200	ENSCHOG00000008615	LSM10	100	91.200	Choloepus_hoffmanni
ENSCPOG00000039302	LSM10	78	30.208	ENSCING00000024984	-	83	30.208	Ciona_intestinalis
ENSCPOG00000039302	LSM10	83	31.373	ENSCSAVG00000001896	-	87	31.373	Ciona_savignyi
ENSCPOG00000039302	LSM10	100	91.057	ENSCANG00000019928	LSM10	100	91.057	Colobus_angolensis_palliatus
ENSCPOG00000039302	LSM10	98	90.909	ENSCGRG00001004317	-	99	90.909	Cricetulus_griseus_chok1gshd
ENSCPOG00000039302	LSM10	93	81.197	ENSCGRG00001022673	-	94	81.197	Cricetulus_griseus_chok1gshd
ENSCPOG00000039302	LSM10	93	81.197	ENSCGRG00000015514	-	94	81.197	Cricetulus_griseus_crigri
ENSCPOG00000039302	LSM10	98	90.909	ENSCGRG00000014935	-	99	90.909	Cricetulus_griseus_crigri
ENSCPOG00000039302	LSM10	96	65.254	ENSCSEG00000010374	oscp1a	79	65.254	Cynoglossus_semilaevis
ENSCPOG00000039302	LSM10	97	63.866	ENSCVAG00000001536	oscp1a	90	63.866	Cyprinodon_variegatus
ENSCPOG00000039302	LSM10	69	72.941	ENSDARG00000109563	CABZ01074453.1	99	72.941	Danio_rerio
ENSCPOG00000039302	LSM10	98	72.727	ENSDARG00000101222	oscp1a	100	72.727	Danio_rerio
ENSCPOG00000039302	LSM10	99	90.984	ENSDNOG00000036662	LSM10	99	90.984	Dasypus_novemcinctus
ENSCPOG00000039302	LSM10	100	91.870	ENSDORG00000007579	Lsm10	100	91.870	Dipodomys_ordii
ENSCPOG00000039302	LSM10	100	91.057	ENSETEG00000005703	LSM10	100	91.057	Echinops_telfairi
ENSCPOG00000039302	LSM10	95	52.137	ENSEBUG00000001312	oscp1a	96	52.137	Eptatretus_burgeri
ENSCPOG00000039302	LSM10	100	91.870	ENSEASG00005012194	LSM10	100	91.870	Equus_asinus_asinus
ENSCPOG00000039302	LSM10	100	92.683	ENSECAG00000005071	LSM10	100	92.683	Equus_caballus
ENSCPOG00000039302	LSM10	100	90.244	ENSEEUG00000012032	LSM10	100	90.244	Erinaceus_europaeus
ENSCPOG00000039302	LSM10	99	69.672	ENSELUG00000007452	oscp1a	100	69.672	Esox_lucius
ENSCPOG00000039302	LSM10	100	69.919	ENSFALG00000000851	LSM10	100	69.919	Ficedula_albicollis
ENSCPOG00000039302	LSM10	100	95.122	ENSFDAG00000021056	LSM10	100	95.122	Fukomys_damarensis
ENSCPOG00000039302	LSM10	89	69.091	ENSFHEG00000001058	oscp1a	95	69.091	Fundulus_heteroclitus
ENSCPOG00000039302	LSM10	97	63.333	ENSGMOG00000019832	oscp1a	98	63.333	Gadus_morhua
ENSCPOG00000039302	LSM10	100	73.984	ENSGALG00000002127	LSM10	100	73.984	Gallus_gallus
ENSCPOG00000039302	LSM10	91	60.000	ENSGAFG00000016445	oscp1a	93	60.000	Gambusia_affinis
ENSCPOG00000039302	LSM10	96	66.102	ENSGACG00000002329	oscp1a	97	66.102	Gasterosteus_aculeatus
ENSCPOG00000039302	LSM10	100	73.171	ENSGAGG00000024848	LSM10	100	73.171	Gopherus_agassizii
ENSCPOG00000039302	LSM10	100	91.057	ENSGGOG00000003556	LSM10	100	91.057	Gorilla_gorilla
ENSCPOG00000039302	LSM10	96	68.644	ENSHBUG00000001722	oscp1a	96	68.644	Haplochromis_burtoni
ENSCPOG00000039302	LSM10	100	96.748	ENSHGLG00000011625	LSM10	100	96.748	Heterocephalus_glaber_female
ENSCPOG00000039302	LSM10	100	96.748	ENSHGLG00100001769	LSM10	100	96.748	Heterocephalus_glaber_male
ENSCPOG00000039302	LSM10	86	67.925	ENSIPUG00000005808	oscp1a	92	67.925	Ictalurus_punctatus
ENSCPOG00000039302	LSM10	100	93.496	ENSSTOG00000000606	LSM10	100	93.496	Ictidomys_tridecemlineatus
ENSCPOG00000039302	LSM10	96	65.254	ENSKMAG00000012143	oscp1a	98	65.254	Kryptolebias_marmoratus
ENSCPOG00000039302	LSM10	98	65.833	ENSLBEG00000017764	oscp1a	98	65.833	Labrus_bergylta
ENSCPOG00000039302	LSM10	100	71.545	ENSLACG00000015904	LSM10	95	71.545	Latimeria_chalumnae
ENSCPOG00000039302	LSM10	98	70.000	ENSLOCG00000018277	oscp1a	98	70.000	Lepisosteus_oculatus
ENSCPOG00000039302	LSM10	100	91.870	ENSLAFG00000009600	LSM10	100	91.870	Loxodonta_africana
ENSCPOG00000039302	LSM10	100	91.057	ENSMFAG00000009115	LSM10	100	91.057	Macaca_fascicularis
ENSCPOG00000039302	LSM10	100	91.057	ENSMMUG00000017338	LSM10	100	91.057	Macaca_mulatta
ENSCPOG00000039302	LSM10	100	91.057	ENSMNEG00000020023	LSM10	100	91.057	Macaca_nemestrina
ENSCPOG00000039302	LSM10	100	91.057	ENSMLEG00000025150	LSM10	100	91.057	Mandrillus_leucophaeus
ENSCPOG00000039302	LSM10	98	65.833	ENSMAMG00000004427	oscp1a	98	65.833	Mastacembelus_armatus
ENSCPOG00000039302	LSM10	96	67.797	ENSMZEG00005026307	oscp1a	96	67.797	Maylandia_zebra
ENSCPOG00000039302	LSM10	100	73.171	ENSMGAG00000015707	LSM10	100	73.171	Meleagris_gallopavo
ENSCPOG00000039302	LSM10	98	88.430	ENSMAUG00000016624	Lsm10	99	88.430	Mesocricetus_auratus
ENSCPOG00000039302	LSM10	98	89.256	ENSMOCG00000021943	Lsm10	99	89.256	Microtus_ochrogaster
ENSCPOG00000039302	LSM10	98	65.833	ENSMMOG00000013597	oscp1a	90	65.833	Mola_mola
ENSCPOG00000039302	LSM10	100	82.927	ENSMODG00000023328	LSM10	100	82.927	Monodelphis_domestica
ENSCPOG00000039302	LSM10	98	89.256	MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	Mus_caroli
ENSCPOG00000039302	LSM10	98	90.083	ENSMUSG00000050188	Lsm10	100	91.398	Mus_musculus
ENSCPOG00000039302	LSM10	98	90.083	MGP_PahariEiJ_G0028798	Lsm10	100	91.398	Mus_pahari
ENSCPOG00000039302	LSM10	98	90.083	MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	Mus_spretus
ENSCPOG00000039302	LSM10	100	93.496	ENSMPUG00000018593	LSM10	100	93.496	Mustela_putorius_furo
ENSCPOG00000039302	LSM10	100	91.057	ENSMLUG00000023895	LSM10	100	91.057	Myotis_lucifugus
ENSCPOG00000039302	LSM10	100	91.870	ENSNGAG00000015011	Lsm10	100	91.870	Nannospalax_galili
ENSCPOG00000039302	LSM10	96	69.492	ENSNBRG00000014306	oscp1a	96	69.492	Neolamprologus_brichardi
ENSCPOG00000039302	LSM10	100	92.683	ENSNLEG00000033754	LSM10	100	92.683	Nomascus_leucogenys
ENSCPOG00000039302	LSM10	100	83.740	ENSMEUG00000006313	LSM10	100	83.740	Notamacropus_eugenii
ENSCPOG00000039302	LSM10	100	91.057	ENSOPRG00000001699	LSM10	100	91.057	Ochotona_princeps
ENSCPOG00000039302	LSM10	100	97.561	ENSODEG00000019161	LSM10	100	97.561	Octodon_degus
ENSCPOG00000039302	LSM10	96	69.492	ENSONIG00000020904	oscp1a	97	69.492	Oreochromis_niloticus
ENSCPOG00000039302	LSM10	100	76.423	ENSOANG00000002066	LSM10	100	76.423	Ornithorhynchus_anatinus
ENSCPOG00000039302	LSM10	100	90.244	ENSOCUG00000005333	LSM10	100	90.244	Oryctolagus_cuniculus
ENSCPOG00000039302	LSM10	97	66.387	ENSORLG00000009504	oscp1a	98	66.387	Oryzias_latipes
ENSCPOG00000039302	LSM10	97	66.387	ENSORLG00020016201	oscp1a	98	66.387	Oryzias_latipes_hni
ENSCPOG00000039302	LSM10	97	67.227	ENSORLG00015007794	oscp1a	98	67.227	Oryzias_latipes_hsok
ENSCPOG00000039302	LSM10	100	93.496	ENSOGAG00000002653	LSM10	100	93.496	Otolemur_garnettii
ENSCPOG00000039302	LSM10	98	93.333	ENSOARG00000009596	LSM10	98	93.333	Ovis_aries
ENSCPOG00000039302	LSM10	100	91.870	ENSPPAG00000023465	LSM10	100	91.870	Pan_paniscus
ENSCPOG00000039302	LSM10	100	92.683	ENSPPRG00000014619	LSM10	100	92.683	Panthera_pardus
ENSCPOG00000039302	LSM10	100	92.683	ENSPTIG00000004613	LSM10	100	92.683	Panthera_tigris_altaica
ENSCPOG00000039302	LSM10	100	91.870	ENSPTRG00000000539	LSM10	100	91.870	Pan_troglodytes
ENSCPOG00000039302	LSM10	100	91.057	ENSPANG00000023172	LSM10	100	91.057	Papio_anubis
ENSCPOG00000039302	LSM10	98	67.500	ENSPKIG00000003728	oscp1a	97	67.500	Paramormyrops_kingsleyae
ENSCPOG00000039302	LSM10	100	71.545	ENSPSIG00000000590	LSM10	100	71.545	Pelodiscus_sinensis
ENSCPOG00000039302	LSM10	62	65.789	ENSPMGG00000015718	oscp1a	99	65.789	Periophthalmus_magnuspinnatus
ENSCPOG00000039302	LSM10	84	84.466	ENSPCIG00000014865	LSM10	76	84.466	Phascolarctos_cinereus
ENSCPOG00000039302	LSM10	91	66.964	ENSPFOG00000020490	oscp1a	95	66.964	Poecilia_formosa
ENSCPOG00000039302	LSM10	91	66.964	ENSPLAG00000016537	oscp1a	85	66.964	Poecilia_latipinna
ENSCPOG00000039302	LSM10	88	67.593	ENSPMEG00000000174	oscp1a	94	67.593	Poecilia_mexicana
ENSCPOG00000039302	LSM10	93	64.348	ENSPREG00000009899	oscp1a	88	64.348	Poecilia_reticulata
ENSCPOG00000039302	LSM10	100	91.870	ENSPPYG00000001539	LSM10	100	91.870	Pongo_abelii
ENSCPOG00000039302	LSM10	96	93.220	ENSPCAG00000002520	LSM10	97	93.220	Procavia_capensis
ENSCPOG00000039302	LSM10	100	93.496	ENSPVAG00000008644	LSM10	100	93.496	Pteropus_vampyrus
ENSCPOG00000039302	LSM10	96	68.644	ENSPNYG00000003138	oscp1a	96	68.644	Pundamilia_nyererei
ENSCPOG00000039302	LSM10	95	68.376	ENSPNAG00000028829	oscp1a	97	68.376	Pygocentrus_nattereri
ENSCPOG00000039302	LSM10	98	90.909	ENSRNOG00000025716	Lsm10	99	90.909	Rattus_norvegicus
ENSCPOG00000039302	LSM10	100	91.057	ENSRBIG00000001561	LSM10	100	91.057	Rhinopithecus_bieti
ENSCPOG00000039302	LSM10	100	91.057	ENSRROG00000011414	LSM10	100	91.057	Rhinopithecus_roxellana
ENSCPOG00000039302	LSM10	100	91.057	ENSSBOG00000036413	-	100	91.057	Saimiri_boliviensis_boliviensis
ENSCPOG00000039302	LSM10	100	82.927	ENSSHAG00000018056	LSM10	100	82.927	Sarcophilus_harrisii
ENSCPOG00000039302	LSM10	98	66.116	ENSSFOG00015019954	lsm10	99	66.116	Scleropages_formosus
ENSCPOG00000039302	LSM10	93	67.826	ENSSMAG00000001297	oscp1a	98	67.826	Scophthalmus_maximus
ENSCPOG00000039302	LSM10	98	65.289	ENSSDUG00000007090	oscp1a	98	65.289	Seriola_dumerili
ENSCPOG00000039302	LSM10	94	66.379	ENSSLDG00000000800	oscp1a	96	66.379	Seriola_lalandi_dorsalis
ENSCPOG00000039302	LSM10	100	90.400	ENSSARG00000004211	LSM10	100	92.000	Sorex_araneus
ENSCPOG00000039302	LSM10	94	66.379	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
ENSCPOG00000039302	LSM10	100	88.618	ENSSSCG00000038916	LSM10	100	88.618	Sus_scrofa
ENSCPOG00000039302	LSM10	99	70.492	ENSTGUG00000001600	-	100	70.492	Taeniopygia_guttata
ENSCPOG00000039302	LSM10	99	71.311	ENSTGUG00000001602	-	100	71.311	Taeniopygia_guttata
ENSCPOG00000039302	LSM10	98	65.833	ENSTRUG00000010531	oscp1a	97	65.833	Takifugu_rubripes
ENSCPOG00000039302	LSM10	100	89.431	ENSTBEG00000016674	LSM10	100	89.431	Tupaia_belangeri
ENSCPOG00000039302	LSM10	100	91.057	ENSUAMG00000020265	LSM10	100	91.057	Ursus_americanus
ENSCPOG00000039302	LSM10	100	91.057	ENSUMAG00000001438	LSM10	57	91.057	Ursus_maritimus
ENSCPOG00000039302	LSM10	100	93.496	ENSVVUG00000023209	LSM10	100	93.496	Vulpes_vulpes
ENSCPOG00000039302	LSM10	100	71.545	ENSXETG00000027631	lsm10	100	71.545	Xenopus_tropicalis
ENSCPOG00000039302	LSM10	98	61.983	ENSXCOG00000018776	oscp1a	75	61.983	Xiphophorus_couchianus
ENSCPOG00000039302	LSM10	95	62.500	ENSXMAG00000019963	oscp1a	96	62.500	Xiphophorus_maculatus