EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000040236 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 35958 bases
Position: chrDS562866.1:860072-896029
Accession: 100719064
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000021619	TruB_N	PF01509.18	5.5e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000043455	-	3586	XM_003475138	ENSCPOP00000021619	244 (aa)	XP_003475186	A0A286X881

Gene Model

Click here to download ENSCPOG00000040236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000040236's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000040236	-	100	87.705	ENSCPOG00000030129	-	85	86.066

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000040236	-	100	85.306	ENSG00000165832	TRUB1	70	85.306	Homo_sapiens
ENSCPOG00000040236	-	75	66.484	ENSAPOG00000020565	trub1	67	66.120	Acanthochromis_polyacanthus
ENSCPOG00000040236	-	81	92.893	ENSAMEG00000014931	TRUB1	70	85.714	Ailuropoda_melanoleuca
ENSCPOG00000040236	-	75	59.016	ENSACIG00000003060	trub1	61	59.016	Amphilophus_citrinellus
ENSCPOG00000040236	-	75	65.934	ENSAOCG00000017188	trub1	67	65.574	Amphiprion_ocellaris
ENSCPOG00000040236	-	77	64.062	ENSAPEG00000015209	trub1	70	64.062	Amphiprion_percula
ENSCPOG00000040236	-	75	67.582	ENSATEG00000023291	trub1	65	67.582	Anabas_testudineus
ENSCPOG00000040236	-	75	75.543	ENSAPLG00000006808	TRUB1	66	75.543	Anas_platyrhynchos
ENSCPOG00000040236	-	76	68.649	ENSACAG00000009282	TRUB1	67	68.649	Anolis_carolinensis
ENSCPOG00000040236	-	95	87.879	ENSANAG00000022870	TRUB1	70	85.772	Aotus_nancymaae
ENSCPOG00000040236	-	75	65.027	ENSACLG00000000823	trub1	66	65.027	Astatotilapia_calliptera
ENSCPOG00000040236	-	75	66.120	ENSAMXG00000015845	trub1	61	66.120	Astyanax_mexicanus
ENSCPOG00000040236	-	98	85.714	ENSBTAG00000012955	TRUB1	70	84.615	Bos_taurus
ENSCPOG00000040236	-	100	85.772	ENSCJAG00000047815	TRUB1	70	85.772	Callithrix_jacchus
ENSCPOG00000040236	-	100	84.490	ENSCAFG00000011688	TRUB1	70	84.490	Canis_familiaris
ENSCPOG00000040236	-	100	84.898	ENSCAFG00020013237	TRUB1	70	84.898	Canis_lupus_dingo
ENSCPOG00000040236	-	98	84.874	ENSCHIG00000020884	TRUB1	70	84.146	Capra_hircus
ENSCPOG00000040236	-	100	81.707	ENSTSYG00000000446	TRUB1	70	82.114	Carlito_syrichta
ENSCPOG00000040236	-	61	100.000	ENSCAPG00000017088	TRUB1	63	100.000	Cavia_aperea
ENSCPOG00000040236	-	95	87.069	ENSCCAG00000028842	TRUB1	70	84.959	Cebus_capucinus
ENSCPOG00000040236	-	100	85.714	ENSCATG00000033431	TRUB1	70	85.714	Cercocebus_atys
ENSCPOG00000040236	-	100	90.164	ENSCLAG00000008664	TRUB1	100	90.164	Chinchilla_lanigera
ENSCPOG00000040236	-	100	85.714	ENSCSAG00000004891	TRUB1	70	85.714	Chlorocebus_sabaeus
ENSCPOG00000040236	-	100	76.327	ENSCHOG00000011931	TRUB1	72	76.327	Choloepus_hoffmanni
ENSCPOG00000040236	-	75	77.717	ENSCPBG00000003051	TRUB1	63	77.717	Chrysemys_picta_bellii
ENSCPOG00000040236	-	100	85.714	ENSCANG00000029445	TRUB1	70	85.714	Colobus_angolensis_palliatus
ENSCPOG00000040236	-	72	76.705	ENSCGRG00001010322	-	51	75.258	Cricetulus_griseus_chok1gshd
ENSCPOG00000040236	-	61	88.667	ENSCGRG00001016772	-	55	74.093	Cricetulus_griseus_chok1gshd
ENSCPOG00000040236	-	72	90.341	ENSCGRG00000010806	Trub1	59	87.565	Cricetulus_griseus_crigri
ENSCPOG00000040236	-	80	61.856	ENSCSEG00000011261	trub1	63	61.856	Cynoglossus_semilaevis
ENSCPOG00000040236	-	75	66.484	ENSCVAG00000008791	trub1	56	66.484	Cyprinodon_variegatus
ENSCPOG00000040236	-	75	67.760	ENSDARG00000053805	trub1	76	69.608	Danio_rerio
ENSCPOG00000040236	-	95	83.117	ENSDNOG00000001069	TRUB1	70	81.707	Dasypus_novemcinctus
ENSCPOG00000040236	-	98	84.937	ENSDORG00000010431	Trub1	68	83.682	Dipodomys_ordii
ENSCPOG00000040236	-	58	86.620	ENSETEG00000009183	TRUB1	57	70.588	Echinops_telfairi
ENSCPOG00000040236	-	95	87.069	ENSEASG00005014739	TRUB1	70	86.122	Equus_asinus_asinus
ENSCPOG00000040236	-	95	87.069	ENSECAG00000007177	TRUB1	70	86.122	Equus_caballus
ENSCPOG00000040236	-	99	69.076	ENSEEUG00000013993	TRUB1	69	69.478	Erinaceus_europaeus
ENSCPOG00000040236	-	75	68.852	ENSELUG00000000502	trub1	64	68.852	Esox_lucius
ENSCPOG00000040236	-	81	91.878	ENSFCAG00000031927	TRUB1	70	84.426	Felis_catus
ENSCPOG00000040236	-	63	75.817	ENSFALG00000002232	TRUB1	59	75.817	Ficedula_albicollis
ENSCPOG00000040236	-	100	85.656	ENSFDAG00000008140	TRUB1	100	85.656	Fukomys_damarensis
ENSCPOG00000040236	-	77	64.583	ENSFHEG00000004016	trub1	66	64.583	Fundulus_heteroclitus
ENSCPOG00000040236	-	75	74.457	ENSGALG00000009091	TRUB1	80	74.457	Gallus_gallus
ENSCPOG00000040236	-	75	64.130	ENSGAFG00000009193	trub1	65	64.130	Gambusia_affinis
ENSCPOG00000040236	-	54	65.909	ENSGACG00000015387	trub1	65	65.909	Gasterosteus_aculeatus
ENSCPOG00000040236	-	92	69.196	ENSGAGG00000009758	TRUB1	56	75.897	Gopherus_agassizii
ENSCPOG00000040236	-	100	85.306	ENSGGOG00000004583	TRUB1	70	85.306	Gorilla_gorilla
ENSCPOG00000040236	-	75	65.027	ENSHBUG00000016787	trub1	66	65.027	Haplochromis_burtoni
ENSCPOG00000040236	-	100	88.525	ENSHGLG00000015314	TRUB1	70	88.525	Heterocephalus_glaber_female
ENSCPOG00000040236	-	100	87.705	ENSHGLG00100009183	TRUB1	100	87.705	Heterocephalus_glaber_male
ENSCPOG00000040236	-	77	64.062	ENSHCOG00000017877	trub1	70	64.062	Hippocampus_comes
ENSCPOG00000040236	-	75	68.852	ENSIPUG00000017559	trub1	64	68.852	Ictalurus_punctatus
ENSCPOG00000040236	-	81	93.401	ENSSTOG00000003641	TRUB1	69	83.673	Ictidomys_tridecemlineatus
ENSCPOG00000040236	-	80	92.308	ENSJJAG00000011800	Trub1	69	81.224	Jaculus_jaculus
ENSCPOG00000040236	-	77	64.583	ENSKMAG00000006232	trub1	69	64.583	Kryptolebias_marmoratus
ENSCPOG00000040236	-	77	65.104	ENSLBEG00000026722	trub1	67	65.104	Labrus_bergylta
ENSCPOG00000040236	-	84	70.388	ENSLACG00000014885	TRUB1	61	75.676	Latimeria_chalumnae
ENSCPOG00000040236	-	80	68.718	ENSLOCG00000012979	trub1	66	68.718	Lepisosteus_oculatus
ENSCPOG00000040236	-	100	77.236	ENSLAFG00000015452	TRUB1	68	75.403	Loxodonta_africana
ENSCPOG00000040236	-	100	85.714	ENSMFAG00000031767	TRUB1	70	85.714	Macaca_fascicularis
ENSCPOG00000040236	-	100	85.714	ENSMMUG00000001902	TRUB1	70	85.714	Macaca_mulatta
ENSCPOG00000040236	-	100	80.000	ENSMNEG00000044646	TRUB1	69	80.000	Macaca_nemestrina
ENSCPOG00000040236	-	100	85.714	ENSMLEG00000042655	TRUB1	70	85.714	Mandrillus_leucophaeus
ENSCPOG00000040236	-	75	65.027	ENSMZEG00005024095	trub1	66	65.027	Maylandia_zebra
ENSCPOG00000040236	-	75	73.913	ENSMGAG00000011135	TRUB1	63	73.913	Meleagris_gallopavo
ENSCPOG00000040236	-	72	86.932	ENSMAUG00000011101	Trub1	57	84.615	Mesocricetus_auratus
ENSCPOG00000040236	-	100	85.656	ENSMICG00000016324	TRUB1	70	85.656	Microcebus_murinus
ENSCPOG00000040236	-	100	76.639	ENSMOCG00000017759	Trub1	68	75.410	Microtus_ochrogaster
ENSCPOG00000040236	-	75	87.363	ENSMODG00000009676	TRUB1	52	85.106	Monodelphis_domestica
ENSCPOG00000040236	-	100	79.918	MGP_CAROLIEiJ_G0023100	Trub1	94	78.689	Mus_caroli
ENSCPOG00000040236	-	100	78.689	ENSMUSG00000025086	Trub1	94	77.869	Mus_musculus
ENSCPOG00000040236	-	100	79.508	MGP_PahariEiJ_G0014588	Trub1	69	78.279	Mus_pahari
ENSCPOG00000040236	-	100	78.689	MGP_SPRETEiJ_G0024021	Trub1	94	77.869	Mus_spretus
ENSCPOG00000040236	-	81	93.909	ENSMPUG00000003556	TRUB1	70	86.122	Mustela_putorius_furo
ENSCPOG00000040236	-	90	87.671	ENSMLUG00000017686	TRUB1	69	81.707	Myotis_lucifugus
ENSCPOG00000040236	-	100	83.607	ENSNGAG00000018682	Trub1	70	83.607	Nannospalax_galili
ENSCPOG00000040236	-	75	65.027	ENSNBRG00000023393	trub1	65	65.027	Neolamprologus_brichardi
ENSCPOG00000040236	-	95	86.207	ENSNLEG00000016345	TRUB1	70	84.898	Nomascus_leucogenys
ENSCPOG00000040236	-	75	87.363	ENSMEUG00000006603	TRUB1	68	86.957	Notamacropus_eugenii
ENSCPOG00000040236	-	81	85.787	ENSOPRG00000009371	TRUB1	69	74.180	Ochotona_princeps
ENSCPOG00000040236	-	100	86.475	ENSODEG00000010854	TRUB1	70	86.475	Octodon_degus
ENSCPOG00000040236	-	75	64.481	ENSONIG00000007249	trub1	67	64.481	Oreochromis_niloticus
ENSCPOG00000040236	-	75	80.978	ENSOANG00000001556	TRUB1	61	80.978	Ornithorhynchus_anatinus
ENSCPOG00000040236	-	81	88.325	ENSOCUG00000009456	TRUB1	66	83.700	Oryctolagus_cuniculus
ENSCPOG00000040236	-	75	67.582	ENSORLG00000029719	trub1	65	67.582	Oryzias_latipes
ENSCPOG00000040236	-	75	67.033	ENSORLG00020016767	trub1	64	67.033	Oryzias_latipes_hni
ENSCPOG00000040236	-	75	67.033	ENSORLG00015014728	trub1	65	67.033	Oryzias_latipes_hsok
ENSCPOG00000040236	-	75	68.681	ENSOMEG00000014556	trub1	64	68.681	Oryzias_melastigma
ENSCPOG00000040236	-	100	86.531	ENSOGAG00000015895	TRUB1	70	86.531	Otolemur_garnettii
ENSCPOG00000040236	-	78	90.306	ENSOARG00000015591	TRUB1	70	79.681	Ovis_aries
ENSCPOG00000040236	-	100	85.714	ENSPPAG00000043645	TRUB1	70	85.714	Pan_paniscus
ENSCPOG00000040236	-	95	84.914	ENSPPRG00000007096	TRUB1	70	84.016	Panthera_pardus
ENSCPOG00000040236	-	95	85.345	ENSPTIG00000006378	TRUB1	70	84.426	Panthera_tigris_altaica
ENSCPOG00000040236	-	100	85.714	ENSPTRG00000002964	TRUB1	70	85.714	Pan_troglodytes
ENSCPOG00000040236	-	100	85.306	ENSPANG00000020712	TRUB1	70	85.306	Papio_anubis
ENSCPOG00000040236	-	75	76.087	ENSPSIG00000012877	TRUB1	63	76.087	Pelodiscus_sinensis
ENSCPOG00000040236	-	75	63.934	ENSPMGG00000000075	trub1	66	63.934	Periophthalmus_magnuspinnatus
ENSCPOG00000040236	-	80	84.694	ENSPEMG00000011156	Trub1	69	74.180	Peromyscus_maniculatus_bairdii
ENSCPOG00000040236	-	75	87.363	ENSPCIG00000009729	TRUB1	53	86.957	Phascolarctos_cinereus
ENSCPOG00000040236	-	75	65.574	ENSPFOG00000009950	trub1	67	65.574	Poecilia_formosa
ENSCPOG00000040236	-	75	65.574	ENSPLAG00000013855	trub1	64	65.574	Poecilia_latipinna
ENSCPOG00000040236	-	75	65.574	ENSPMEG00000009064	trub1	66	65.574	Poecilia_mexicana
ENSCPOG00000040236	-	77	65.079	ENSPREG00000003343	trub1	68	65.079	Poecilia_reticulata
ENSCPOG00000040236	-	95	87.500	ENSPPYG00000002676	TRUB1	70	86.122	Pongo_abelii
ENSCPOG00000040236	-	100	77.016	ENSPCAG00000008427	TRUB1	70	75.600	Procavia_capensis
ENSCPOG00000040236	-	100	78.689	ENSPCOG00000024360	TRUB1	68	78.689	Propithecus_coquereli
ENSCPOG00000040236	-	100	84.016	ENSPVAG00000007575	TRUB1	93	84.016	Pteropus_vampyrus
ENSCPOG00000040236	-	75	65.027	ENSPNYG00000018614	trub1	66	65.027	Pundamilia_nyererei
ENSCPOG00000040236	-	75	56.044	ENSPNAG00000006881	trub1	55	56.044	Pygocentrus_nattereri
ENSCPOG00000040236	-	100	78.689	ENSRNOG00000017321	Trub1	69	77.459	Rattus_norvegicus
ENSCPOG00000040236	-	97	75.527	ENSRBIG00000033423	TRUB1	67	75.527	Rhinopithecus_bieti
ENSCPOG00000040236	-	100	85.714	ENSRROG00000033902	TRUB1	70	85.714	Rhinopithecus_roxellana
ENSCPOG00000040236	-	95	87.500	ENSSBOG00000024237	TRUB1	70	85.366	Saimiri_boliviensis_boliviensis
ENSCPOG00000040236	-	61	86.000	ENSSHAG00000009346	TRUB1	50	86.000	Sarcophilus_harrisii
ENSCPOG00000040236	-	75	66.667	ENSSFOG00015022124	trub1	62	66.667	Scleropages_formosus
ENSCPOG00000040236	-	77	65.789	ENSSMAG00000001020	trub1	68	65.789	Scophthalmus_maximus
ENSCPOG00000040236	-	73	67.232	ENSSDUG00000016414	trub1	68	65.789	Seriola_dumerili
ENSCPOG00000040236	-	73	67.797	ENSSLDG00000015486	trub1	68	66.316	Seriola_lalandi_dorsalis
ENSCPOG00000040236	-	75	78.804	ENSSPUG00000001642	TRUB1	63	78.804	Sphenodon_punctatus
ENSCPOG00000040236	-	75	66.667	ENSSPAG00000001217	trub1	66	66.667	Stegastes_partitus
ENSCPOG00000040236	-	100	81.633	ENSSSCG00000010653	TRUB1	71	81.633	Sus_scrofa
ENSCPOG00000040236	-	75	74.725	ENSTGUG00000010971	TRUB1	65	74.457	Taeniopygia_guttata
ENSCPOG00000040236	-	81	92.386	ENSTTRG00000005767	TRUB1	93	82.857	Tursiops_truncatus
ENSCPOG00000040236	-	95	86.695	ENSUAMG00000024876	TRUB1	70	86.122	Ursus_americanus
ENSCPOG00000040236	-	78	94.764	ENSUMAG00000002411	TRUB1	91	82.449	Ursus_maritimus
ENSCPOG00000040236	-	100	84.082	ENSVPAG00000005507	TRUB1	70	84.082	Vicugna_pacos
ENSCPOG00000040236	-	100	83.265	ENSVVUG00000010085	TRUB1	58	83.265	Vulpes_vulpes
ENSCPOG00000040236	-	75	69.022	ENSXETG00000023828	trub1	66	69.022	Xenopus_tropicalis
ENSCPOG00000040236	-	75	65.027	ENSXCOG00000017847	trub1	65	65.027	Xiphophorus_couchianus
ENSCPOG00000040236	-	75	65.027	ENSXMAG00000014701	trub1	66	65.027	Xiphophorus_maculatus