EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAG00000001629 (Gene tree)
Gene ID: 103235414
Gene Symbol: ZNF550
Alias: MGC41917
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 10463 bases
Position: chr6:49917351-49927813
Accession: 28643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	1	6
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	2	6
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	3	6
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	4	6
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	5	6
ENSCSAP00000016396	zf-C2H2	PF00096.26	4.8e-37	6	6
ENSCSAP00000016396	zf-met	PF12874.7	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000016901	ZNF550-201	1963	-	ENSCSAP00000016396	408 (aa)	-	A0A0D9S6A7

Gene Model

Click here to download ENSCSAG00000001629's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000001629's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAG00000001629	ZNF550	58	45.128	ENSCSAG00000018864	ZNF319	87	45.128
ENSCSAG00000001629	ZNF550	66	45.455	ENSCSAG00000018240	ZNF236	61	45.455
ENSCSAG00000001629	ZNF550	60	54.464	ENSCSAG00000001974	ZNF808	82	54.464
ENSCSAG00000001629	ZNF550	99	56.828	ENSCSAG00000001970	ZNF28	99	56.828
ENSCSAG00000001629	ZNF550	79	59.471	ENSCSAG00000001973	ZNF83	87	59.471
ENSCSAG00000001629	ZNF550	99	51.190	ENSCSAG00000007764	ZNF317	89	51.190
ENSCSAG00000001629	ZNF550	56	54.745	ENSCSAG00000005878	ZNF768	53	51.101
ENSCSAG00000001629	ZNF550	57	55.263	ENSCSAG00000003329	ZNF226	79	55.263
ENSCSAG00000001629	ZNF550	99	53.982	ENSCSAG00000003326	ZNF233	99	53.982
ENSCSAG00000001629	ZNF550	56	54.185	ENSCSAG00000003323	ZNF235	57	54.185
ENSCSAG00000001629	ZNF550	88	56.388	ENSCSAG00000003321	ZNF112	74	56.388
ENSCSAG00000001629	ZNF550	100	39.252	ENSCSAG00000010150	ZNF205	73	39.252
ENSCSAG00000001629	ZNF550	70	49.558	ENSCSAG00000003334	ZNF225	91	49.558
ENSCSAG00000001629	ZNF550	68	55.224	ENSCSAG00000006632	ZNF791	90	55.224
ENSCSAG00000001629	ZNF550	56	50.262	ENSCSAG00000019655	ZNF628	59	50.262
ENSCSAG00000001629	ZNF550	75	53.680	ENSCSAG00000019650	-	93	53.680
ENSCSAG00000001629	ZNF550	56	39.655	ENSCSAG00000001726	ZNF784	66	33.708
ENSCSAG00000001629	ZNF550	56	40.000	ENSCSAG00000001727	-	62	40.000
ENSCSAG00000001629	ZNF550	99	40.521	ENSCSAG00000003718	ZFP1	97	40.521
ENSCSAG00000001629	ZNF550	92	62.555	ENSCSAG00000018533	ZNF345	89	62.555
ENSCSAG00000001629	ZNF550	65	43.655	ENSCSAG00000003729	PRDM5	80	43.655
ENSCSAG00000001629	ZNF550	56	51.982	ENSCSAG00000003345	ZNF155	77	51.982
ENSCSAG00000001629	ZNF550	91	59.292	ENSCSAG00000000471	-	98	59.292
ENSCSAG00000001629	ZNF550	99	59.307	ENSCSAG00000005600	ZNF267	99	59.307
ENSCSAG00000001629	ZNF550	68	61.233	ENSCSAG00000004194	ZNF850	92	61.233
ENSCSAG00000001629	ZNF550	99	48.523	ENSCSAG00000014798	-	99	48.523
ENSCSAG00000001629	ZNF550	99	54.348	ENSCSAG00000006686	ZNF700	97	53.991
ENSCSAG00000001629	ZNF550	56	41.964	ENSCSAG00000000974	ZNF683	52	41.964
ENSCSAG00000001629	ZNF550	99	55.310	ENSCSAG00000001938	ZNF845	92	55.310
ENSCSAG00000001629	ZNF550	88	59.302	ENSCSAG00000004185	-	100	59.302
ENSCSAG00000001629	ZNF550	99	56.977	ENSCSAG00000001992	ZNF836	97	56.977
ENSCSAG00000001629	ZNF550	62	37.037	ENSCSAG00000005405	ZNF423	69	37.037
ENSCSAG00000001629	ZNF550	99	53.540	ENSCSAG00000001956	-	98	53.540
ENSCSAG00000001629	ZNF550	75	53.982	ENSCSAG00000001955	-	95	53.982
ENSCSAG00000001629	ZNF550	99	55.752	ENSCSAG00000001958	ZNF468	99	55.752
ENSCSAG00000001629	ZNF550	92	52.212	ENSCSAG00000017407	ZNF2	98	52.212
ENSCSAG00000001629	ZNF550	55	37.037	ENSCSAG00000019619	ZNF526	51	33.594
ENSCSAG00000001629	ZNF550	56	38.421	ENSCSAG00000019618	ZNF574	82	37.500
ENSCSAG00000001629	ZNF550	99	61.674	ENSCSAG00000001670	ZNF582	87	61.674

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000001629	ZNF550	100	94.673	ENSG00000251369	ZNF550	99	94.675	Homo_sapiens
ENSCSAG00000001629	ZNF550	100	99.020	ENSCATG00000020915	ZNF550	98	99.020	Cercocebus_atys
ENSCSAG00000001629	ZNF550	91	67.914	ENSCLAG00000000250	ZNF550	95	67.914	Chinchilla_lanigera
ENSCSAG00000001629	ZNF550	100	96.569	ENSCANG00000033735	ZNF550	98	96.569	Colobus_angolensis_palliatus
ENSCSAG00000001629	ZNF550	86	71.429	ENSDNOG00000033330	-	99	71.429	Dasypus_novemcinctus
ENSCSAG00000001629	ZNF550	99	68.281	ENSFCAG00000034766	ZNF550	98	68.281	Felis_catus
ENSCSAG00000001629	ZNF550	100	94.431	ENSGGOG00000014068	ZNF550	98	94.431	Gorilla_gorilla
ENSCSAG00000001629	ZNF550	100	71.220	ENSHGLG00000018048	ZNF550	98	71.220	Heterocephalus_glaber_female
ENSCSAG00000001629	ZNF550	100	98.039	ENSMFAG00000036005	ZNF550	98	98.039	Macaca_fascicularis
ENSCSAG00000001629	ZNF550	100	97.549	ENSMMUG00000006122	ZNF550	98	97.549	Macaca_mulatta
ENSCSAG00000001629	ZNF550	100	98.039	ENSMNEG00000041366	ZNF550	98	98.039	Macaca_nemestrina
ENSCSAG00000001629	ZNF550	100	98.775	ENSMLEG00000034688	ZNF550	98	98.775	Mandrillus_leucophaeus
ENSCSAG00000001629	ZNF550	100	83.092	ENSMICG00000007561	ZNF550	98	83.092	Microcebus_murinus
ENSCSAG00000001629	ZNF550	99	68.039	ENSPPRG00000013475	ZNF550	98	68.039	Panthera_pardus
ENSCSAG00000001629	ZNF550	100	66.766	ENSPTIG00000018007	ZNF550	80	66.766	Panthera_tigris_altaica
ENSCSAG00000001629	ZNF550	100	94.189	ENSPTRG00000011560	ZNF550	98	94.189	Pan_troglodytes
ENSCSAG00000001629	ZNF550	100	98.039	ENSPANG00000030602	ZNF550	98	98.039	Papio_anubis
ENSCSAG00000001629	ZNF550	100	85.024	ENSPCOG00000018751	ZNF550	98	85.024	Propithecus_coquereli
ENSCSAG00000001629	ZNF550	100	72.059	ENSPVAG00000000908	ZNF550	98	72.059	Pteropus_vampyrus
ENSCSAG00000001629	ZNF550	100	98.039	ENSRBIG00000017275	ZNF550	98	98.039	Rhinopithecus_bieti
ENSCSAG00000001629	ZNF550	100	98.039	ENSRROG00000040063	ZNF550	98	98.039	Rhinopithecus_roxellana
ENSCSAG00000001629	ZNF550	100	77.778	ENSTTRG00000000293	ZNF550	100	77.778	Tursiops_truncatus