EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000002120 (Gene tree)
Gene ID: 103223845
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 39274 bases
Position: chr20:7579726-7618999
Accession: 103223845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000015915	EST1	PF10374.9	5.2e-24	1	1
ENSCSAP00000015915	EST1_DNA_bind	PF10373.9	5.2e-40	1	2
ENSCSAP00000015915	EST1_DNA_bind	PF10373.9	5.2e-40	2	2
ENSCSAP00000015915	PIN_4	PF13638.6	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000000137	SMG5-201	5519	-	ENSCSAP00000015915	1016 (aa)	XP_007974948	A0A0D9S4X6

Gene Model

Click here to download ENSCSAG00000002120's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000002120's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000002120	SMG5	100	99.213	ENSG00000198952	SMG5	100	99.213	Homo_sapiens
ENSCSAG00000002120	SMG5	99	67.647	ENSAPOG00000019690	smg5	99	66.896	Acanthochromis_polyacanthus
ENSCSAG00000002120	SMG5	98	92.548	ENSAMEG00000014458	SMG5	100	92.548	Ailuropoda_melanoleuca
ENSCSAG00000002120	SMG5	99	65.038	ENSACIG00000001353	smg5	99	66.763	Amphilophus_citrinellus
ENSCSAG00000002120	SMG5	98	64.828	ENSAOCG00000019483	smg5	93	66.701	Amphiprion_ocellaris
ENSCSAG00000002120	SMG5	98	66.600	ENSAPEG00000022949	smg5	98	66.434	Amphiprion_percula
ENSCSAG00000002120	SMG5	99	65.868	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSCSAG00000002120	SMG5	98	78.927	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSCSAG00000002120	SMG5	100	98.228	ENSANAG00000032899	SMG5	100	98.228	Aotus_nancymaae
ENSCSAG00000002120	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.314	Astatotilapia_calliptera
ENSCSAG00000002120	SMG5	100	96.063	ENSBTAG00000009435	SMG5	100	96.063	Bos_taurus
ENSCSAG00000002120	SMG5	99	44.101	ENSBTAG00000021747	-	99	43.478	Bos_taurus
ENSCSAG00000002120	SMG5	100	98.228	ENSCJAG00000005684	SMG5	100	98.228	Callithrix_jacchus
ENSCSAG00000002120	SMG5	100	94.587	ENSCAFG00000016839	SMG5	100	93.799	Canis_familiaris
ENSCSAG00000002120	SMG5	100	94.587	ENSCAFG00020006061	SMG5	100	93.799	Canis_lupus_dingo
ENSCSAG00000002120	SMG5	99	44.807	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSCSAG00000002120	SMG5	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSCSAG00000002120	SMG5	100	97.148	ENSTSYG00000004099	SMG5	100	97.148	Carlito_syrichta
ENSCSAG00000002120	SMG5	97	74.949	ENSCAPG00000003631	SMG5	100	75.493	Cavia_aperea
ENSCSAG00000002120	SMG5	100	96.169	ENSCPOG00000015696	SMG5	100	95.874	Cavia_porcellus
ENSCSAG00000002120	SMG5	100	98.228	ENSCCAG00000027409	SMG5	100	98.228	Cebus_capucinus
ENSCSAG00000002120	SMG5	100	99.902	ENSCATG00000030539	SMG5	100	99.902	Cercocebus_atys
ENSCSAG00000002120	SMG5	100	96.464	ENSCLAG00000003983	SMG5	100	96.464	Chinchilla_lanigera
ENSCSAG00000002120	SMG5	54	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSCSAG00000002120	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSCSAG00000002120	SMG5	93	35.088	ENSCING00000008706	-	99	35.077	Ciona_intestinalis
ENSCSAG00000002120	SMG5	100	95.472	ENSCANG00000029208	SMG5	100	95.472	Colobus_angolensis_palliatus
ENSCSAG00000002120	SMG5	100	93.026	ENSCGRG00001006336	Smg5	100	92.633	Cricetulus_griseus_chok1gshd
ENSCSAG00000002120	SMG5	98	93.058	ENSCGRG00000005111	Smg5	100	92.649	Cricetulus_griseus_crigri
ENSCSAG00000002120	SMG5	99	65.500	ENSCSEG00000014220	smg5	92	78.014	Cynoglossus_semilaevis
ENSCSAG00000002120	SMG5	99	61.014	ENSCVAG00000000529	smg5	99	61.710	Cyprinodon_variegatus
ENSCSAG00000002120	SMG5	100	91.732	ENSDNOG00000000051	SMG5	100	91.732	Dasypus_novemcinctus
ENSCSAG00000002120	SMG5	92	36.786	ENSDNOG00000039862	-	100	35.300	Dasypus_novemcinctus
ENSCSAG00000002120	SMG5	100	93.811	ENSDORG00000010382	Smg5	100	93.615	Dipodomys_ordii
ENSCSAG00000002120	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSCSAG00000002120	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSCSAG00000002120	SMG5	90	46.497	ENSEBUG00000003739	smg5	98	46.218	Eptatretus_burgeri
ENSCSAG00000002120	SMG5	100	96.949	ENSEASG00005019122	SMG5	100	96.949	Equus_asinus_asinus
ENSCSAG00000002120	SMG5	100	96.949	ENSECAG00000001389	SMG5	100	96.949	Equus_caballus
ENSCSAG00000002120	SMG5	72	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSCSAG00000002120	SMG5	99	65.159	ENSELUG00000012585	smg5	99	65.063	Esox_lucius
ENSCSAG00000002120	SMG5	100	93.898	ENSFCAG00000011783	SMG5	100	93.215	Felis_catus
ENSCSAG00000002120	SMG5	58	82.137	ENSFALG00000001166	-	99	82.245	Ficedula_albicollis
ENSCSAG00000002120	SMG5	98	93.051	ENSFDAG00000017388	SMG5	100	92.951	Fukomys_damarensis
ENSCSAG00000002120	SMG5	97	62.260	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSCSAG00000002120	SMG5	99	61.370	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSCSAG00000002120	SMG5	99	78.014	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSCSAG00000002120	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSCSAG00000002120	SMG5	100	99.213	ENSGGOG00000010932	SMG5	100	99.213	Gorilla_gorilla
ENSCSAG00000002120	SMG5	99	64.211	ENSHBUG00000008654	smg5	99	65.366	Haplochromis_burtoni
ENSCSAG00000002120	SMG5	100	92.927	ENSHGLG00000019152	SMG5	100	93.124	Heterocephalus_glaber_female
ENSCSAG00000002120	SMG5	90	92.990	ENSHGLG00100015948	SMG5	99	93.209	Heterocephalus_glaber_male
ENSCSAG00000002120	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSCSAG00000002120	SMG5	99	61.469	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSCSAG00000002120	SMG5	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSCSAG00000002120	SMG5	100	93.032	ENSJJAG00000022763	Smg5	100	92.836	Jaculus_jaculus
ENSCSAG00000002120	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.422	Kryptolebias_marmoratus
ENSCSAG00000002120	SMG5	99	66.409	ENSLBEG00000002145	smg5	99	66.441	Labrus_bergylta
ENSCSAG00000002120	SMG5	100	64.957	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSCSAG00000002120	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSCSAG00000002120	SMG5	100	94.488	ENSLAFG00000006241	SMG5	100	94.488	Loxodonta_africana
ENSCSAG00000002120	SMG5	100	99.803	ENSMFAG00000045357	SMG5	100	99.803	Macaca_fascicularis
ENSCSAG00000002120	SMG5	100	99.705	ENSMMUG00000000090	SMG5	100	99.705	Macaca_mulatta
ENSCSAG00000002120	SMG5	100	99.705	ENSMNEG00000044425	SMG5	100	99.705	Macaca_nemestrina
ENSCSAG00000002120	SMG5	100	93.529	ENSMLEG00000041192	SMG5	100	93.529	Mandrillus_leucophaeus
ENSCSAG00000002120	SMG5	99	61.106	ENSMAMG00000010683	smg5	58	56.585	Mastacembelus_armatus
ENSCSAG00000002120	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.276	Maylandia_zebra
ENSCSAG00000002120	SMG5	99	63.740	ENSMZEG00005015815	smg5	99	64.695	Maylandia_zebra
ENSCSAG00000002120	SMG5	55	45.184	ENSMAUG00000000043	-	96	44.444	Mesocricetus_auratus
ENSCSAG00000002120	SMG5	100	92.141	ENSMAUG00000010381	Smg5	100	91.945	Mesocricetus_auratus
ENSCSAG00000002120	SMG5	100	97.343	ENSMICG00000002257	SMG5	100	97.343	Microcebus_murinus
ENSCSAG00000002120	SMG5	100	91.765	ENSMOCG00000016590	Smg5	100	91.471	Microtus_ochrogaster
ENSCSAG00000002120	SMG5	99	59.216	ENSMMOG00000017199	smg5	99	59.821	Mola_mola
ENSCSAG00000002120	SMG5	93	37.073	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCSAG00000002120	SMG5	97	34.891	ENSMODG00000004511	-	99	34.095	Monodelphis_domestica
ENSCSAG00000002120	SMG5	87	90.090	ENSMODG00000016901	SMG5	98	90.541	Monodelphis_domestica
ENSCSAG00000002120	SMG5	78	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSCSAG00000002120	SMG5	80	38.173	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSCSAG00000002120	SMG5	99	60.800	ENSMALG00000010375	smg5	99	59.680	Monopterus_albus
ENSCSAG00000002120	SMG5	100	92.633	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCSAG00000002120	SMG5	100	92.829	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCSAG00000002120	SMG5	100	92.444	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCSAG00000002120	SMG5	100	92.633	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCSAG00000002120	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.211	Mustela_putorius_furo
ENSCSAG00000002120	SMG5	100	95.695	ENSMLUG00000008518	SMG5	100	95.695	Myotis_lucifugus
ENSCSAG00000002120	SMG5	100	94.100	ENSNGAG00000020706	Smg5	100	93.805	Nannospalax_galili
ENSCSAG00000002120	SMG5	98	44.378	ENSNGAG00000012101	-	98	44.588	Nannospalax_galili
ENSCSAG00000002120	SMG5	97	63.163	ENSNBRG00000004332	smg5	98	64.293	Neolamprologus_brichardi
ENSCSAG00000002120	SMG5	100	99.114	ENSNLEG00000012439	SMG5	100	99.114	Nomascus_leucogenys
ENSCSAG00000002120	SMG5	100	88.102	ENSMEUG00000012834	SMG5	100	87.217	Notamacropus_eugenii
ENSCSAG00000002120	SMG5	100	94.488	ENSOPRG00000009152	SMG5	100	94.488	Ochotona_princeps
ENSCSAG00000002120	SMG5	100	95.669	ENSODEG00000012237	SMG5	100	95.669	Octodon_degus
ENSCSAG00000002120	SMG5	50	59.598	ENSONIG00000008632	smg5	55	55.592	Oreochromis_niloticus
ENSCSAG00000002120	SMG5	89	40.700	ENSOCUG00000023338	-	99	40.591	Oryctolagus_cuniculus
ENSCSAG00000002120	SMG5	98	95.464	ENSOCUG00000012886	SMG5	100	95.464	Oryctolagus_cuniculus
ENSCSAG00000002120	SMG5	99	64.327	ENSORLG00020013127	smg5	99	65.920	Oryzias_latipes_hni
ENSCSAG00000002120	SMG5	99	64.043	ENSORLG00015019014	smg5	99	65.792	Oryzias_latipes_hsok
ENSCSAG00000002120	SMG5	100	95.177	ENSOGAG00000004966	SMG5	100	95.177	Otolemur_garnettii
ENSCSAG00000002120	SMG5	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSCSAG00000002120	SMG5	99	44.477	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSCSAG00000002120	SMG5	100	98.917	ENSPPAG00000011996	SMG5	100	98.917	Pan_paniscus
ENSCSAG00000002120	SMG5	98	93.750	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSCSAG00000002120	SMG5	99	85.672	ENSPTIG00000007892	SMG5	98	85.613	Panthera_tigris_altaica
ENSCSAG00000002120	SMG5	100	99.114	ENSPTRG00000023925	SMG5	100	99.114	Pan_troglodytes
ENSCSAG00000002120	SMG5	100	99.114	ENSPTRG00000049282	-	100	99.114	Pan_troglodytes
ENSCSAG00000002120	SMG5	100	99.902	ENSPANG00000011201	SMG5	100	99.902	Papio_anubis
ENSCSAG00000002120	SMG5	99	65.507	ENSPKIG00000009402	smg5	99	65.759	Paramormyrops_kingsleyae
ENSCSAG00000002120	SMG5	98	80.834	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSCSAG00000002120	SMG5	99	60.422	ENSPMGG00000010465	smg5	99	60.813	Periophthalmus_magnuspinnatus
ENSCSAG00000002120	SMG5	100	93.320	ENSPEMG00000001819	Smg5	100	92.927	Peromyscus_maniculatus_bairdii
ENSCSAG00000002120	SMG5	56	46.060	ENSPEMG00000010022	-	95	44.845	Peromyscus_maniculatus_bairdii
ENSCSAG00000002120	SMG5	99	49.324	ENSPMAG00000000410	smg5	100	49.430	Petromyzon_marinus
ENSCSAG00000002120	SMG5	100	89.587	ENSPCIG00000018938	SMG5	100	89.980	Phascolarctos_cinereus
ENSCSAG00000002120	SMG5	50	60.221	ENSPFOG00000010191	smg5	99	62.177	Poecilia_formosa
ENSCSAG00000002120	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	61.998	Poecilia_latipinna
ENSCSAG00000002120	SMG5	99	65.706	ENSPMEG00000014105	smg5	99	65.322	Poecilia_mexicana
ENSCSAG00000002120	SMG5	50	60.409	ENSPREG00000017713	smg5	99	61.909	Poecilia_reticulata
ENSCSAG00000002120	SMG5	100	99.409	ENSPPYG00000000723	SMG5	100	99.409	Pongo_abelii
ENSCSAG00000002120	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSCSAG00000002120	SMG5	100	97.441	ENSPCOG00000004741	SMG5	100	97.441	Propithecus_coquereli
ENSCSAG00000002120	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSCSAG00000002120	SMG5	93	63.883	ENSPNYG00000013397	smg5	99	61.027	Pundamilia_nyererei
ENSCSAG00000002120	SMG5	100	92.829	ENSRNOG00000019590	Smg5	100	92.436	Rattus_norvegicus
ENSCSAG00000002120	SMG5	100	99.606	ENSRBIG00000027428	SMG5	100	99.606	Rhinopithecus_bieti
ENSCSAG00000002120	SMG5	100	99.508	ENSRROG00000030035	SMG5	100	99.508	Rhinopithecus_roxellana
ENSCSAG00000002120	SMG5	100	98.228	ENSSBOG00000033339	SMG5	100	98.228	Saimiri_boliviensis_boliviensis
ENSCSAG00000002120	SMG5	98	89.189	ENSSHAG00000014163	SMG5	100	89.590	Sarcophilus_harrisii
ENSCSAG00000002120	SMG5	88	39.895	ENSSHAG00000000561	-	87	39.895	Sarcophilus_harrisii
ENSCSAG00000002120	SMG5	99	34.198	ENSSHAG00000009572	-	80	42.998	Sarcophilus_harrisii
ENSCSAG00000002120	SMG5	64	39.181	ENSSHAG00000000935	-	82	40.244	Sarcophilus_harrisii
ENSCSAG00000002120	SMG5	99	66.245	ENSSFOG00015024175	smg5	99	66.504	Scleropages_formosus
ENSCSAG00000002120	SMG5	99	60.816	ENSSMAG00000013059	smg5	99	62.511	Scophthalmus_maximus
ENSCSAG00000002120	SMG5	50	60.326	ENSSDUG00000007122	smg5	92	77.103	Seriola_dumerili
ENSCSAG00000002120	SMG5	99	60.386	ENSSLDG00000011418	smg5	92	77.830	Seriola_lalandi_dorsalis
ENSCSAG00000002120	SMG5	90	81.025	ENSSARG00000012484	SMG5	100	81.025	Sorex_araneus
ENSCSAG00000002120	SMG5	94	77.172	ENSSPUG00000002260	SMG5	100	76.263	Sphenodon_punctatus
ENSCSAG00000002120	SMG5	91	76.815	ENSSPAG00000014266	smg5	99	65.448	Stegastes_partitus
ENSCSAG00000002120	SMG5	99	75.172	ENSSSCG00000039308	-	100	75.369	Sus_scrofa
ENSCSAG00000002120	SMG5	100	97.047	ENSSSCG00000006490	-	100	97.047	Sus_scrofa
ENSCSAG00000002120	SMG5	99	80.613	ENSTGUG00000003748	-	100	80.371	Taeniopygia_guttata
ENSCSAG00000002120	SMG5	99	63.775	ENSTRUG00000012580	smg5	99	64.575	Takifugu_rubripes
ENSCSAG00000002120	SMG5	99	65.310	ENSTNIG00000010303	smg5	99	65.082	Tetraodon_nigroviridis
ENSCSAG00000002120	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCSAG00000002120	SMG5	100	91.732	ENSTTRG00000001401	SMG5	100	91.732	Tursiops_truncatus
ENSCSAG00000002120	SMG5	100	93.406	ENSUAMG00000013721	SMG5	100	92.815	Ursus_americanus
ENSCSAG00000002120	SMG5	98	88.945	ENSUMAG00000018041	SMG5	97	88.342	Ursus_maritimus
ENSCSAG00000002120	SMG5	98	86.882	ENSVPAG00000009446	SMG5	99	86.882	Vicugna_pacos
ENSCSAG00000002120	SMG5	100	94.291	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSCSAG00000002120	SMG5	77	65.952	ENSXETG00000033791	SMG5	99	65.195	Xenopus_tropicalis
ENSCSAG00000002120	SMG5	99	65.764	ENSXMAG00000013499	smg5	99	65.769	Xiphophorus_maculatus