EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000002896 (Gene tree)
Gene ID: 103239052
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 26694 bases
Position: chr11:102953480-102980173
Accession: 103239052
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000015141	zf-C2H2	PF00096.26	3e-19	1	2
ENSCSAP00000015141	zf-C2H2	PF00096.26	3e-19	2	2
ENSCSAP00000015141	zf-met	PF12874.7	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000000924	PRDM4-201	2711	-	ENSCSAP00000015141	801 (aa)	XP_008002755	A0A0D9S2Q2

Gene Model

Click here to download ENSCSAG00000002896's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000002896's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000002896	PRDM4	100	99.625	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSCSAG00000002896	PRDM4	99	97.247	ENSAMEG00000016174	PRDM4	99	97.247	Ailuropoda_melanoleuca
ENSCSAG00000002896	PRDM4	99	87.469	ENSAPLG00000009846	PRDM4	99	86.842	Anas_platyrhynchos
ENSCSAG00000002896	PRDM4	100	99.001	ENSANAG00000024800	PRDM4	100	99.001	Aotus_nancymaae
ENSCSAG00000002896	PRDM4	100	97.129	ENSBTAG00000012999	PRDM4	100	97.129	Bos_taurus
ENSCSAG00000002896	PRDM4	100	98.502	ENSCJAG00000015261	PRDM4	100	98.502	Callithrix_jacchus
ENSCSAG00000002896	PRDM4	100	97.253	ENSCAFG00000001788	PRDM4	100	97.253	Canis_familiaris
ENSCSAG00000002896	PRDM4	100	97.253	ENSCAFG00020004916	PRDM4	100	97.253	Canis_lupus_dingo
ENSCSAG00000002896	PRDM4	100	96.754	ENSCHIG00000019409	PRDM4	100	96.754	Capra_hircus
ENSCSAG00000002896	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSCSAG00000002896	PRDM4	99	90.738	ENSCAPG00000013937	PRDM4	99	90.613	Cavia_aperea
ENSCSAG00000002896	PRDM4	99	90.186	ENSCPOG00000022385	PRDM4	100	90.062	Cavia_porcellus
ENSCSAG00000002896	PRDM4	100	99.126	ENSCCAG00000036033	PRDM4	100	99.126	Cebus_capucinus
ENSCSAG00000002896	PRDM4	100	99.501	ENSCATG00000044797	PRDM4	100	99.501	Cercocebus_atys
ENSCSAG00000002896	PRDM4	99	92.662	ENSCLAG00000007545	PRDM4	100	93.035	Chinchilla_lanigera
ENSCSAG00000002896	PRDM4	71	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSCSAG00000002896	PRDM4	99	88.331	ENSCPBG00000023187	PRDM4	100	87.955	Chrysemys_picta_bellii
ENSCSAG00000002896	PRDM4	100	99.625	ENSCANG00000021804	PRDM4	100	99.625	Colobus_angolensis_palliatus
ENSCSAG00000002896	PRDM4	99	93.035	ENSCGRG00001015102	-	100	92.662	Cricetulus_griseus_chok1gshd
ENSCSAG00000002896	PRDM4	96	93.032	ENSCGRG00000004044	-	100	92.645	Cricetulus_griseus_crigri
ENSCSAG00000002896	PRDM4	100	96.380	ENSDNOG00000032478	PRDM4	100	96.380	Dasypus_novemcinctus
ENSCSAG00000002896	PRDM4	99	82.058	ENSDORG00000015081	-	100	81.807	Dipodomys_ordii
ENSCSAG00000002896	PRDM4	93	45.938	ENSEBUG00000003775	prdm4	99	45.908	Eptatretus_burgeri
ENSCSAG00000002896	PRDM4	100	97.253	ENSECAG00000015423	PRDM4	100	97.253	Equus_caballus
ENSCSAG00000002896	PRDM4	94	93.209	ENSEEUG00000006569	PRDM4	99	92.810	Erinaceus_europaeus
ENSCSAG00000002896	PRDM4	99	60.510	ENSELUG00000015265	prdm4	99	60.753	Esox_lucius
ENSCSAG00000002896	PRDM4	100	97.753	ENSFCAG00000022478	PRDM4	100	97.753	Felis_catus
ENSCSAG00000002896	PRDM4	99	87.704	ENSFALG00000013342	PRDM4	100	87.202	Ficedula_albicollis
ENSCSAG00000002896	PRDM4	100	86.924	ENSGALG00000012619	PRDM4	100	86.301	Gallus_gallus
ENSCSAG00000002896	PRDM4	99	87.970	ENSGAGG00000002763	PRDM4	95	87.594	Gopherus_agassizii
ENSCSAG00000002896	PRDM4	99	99.500	ENSGGOG00000001244	PRDM4	99	99.500	Gorilla_gorilla
ENSCSAG00000002896	PRDM4	99	93.726	ENSHGLG00000004590	PRDM4	98	93.476	Heterocephalus_glaber_female
ENSCSAG00000002896	PRDM4	99	92.671	ENSHGLG00100007464	PRDM4	100	92.422	Heterocephalus_glaber_male
ENSCSAG00000002896	PRDM4	95	61.399	ENSIPUG00000024162	prdm4	93	61.749	Ictalurus_punctatus
ENSCSAG00000002896	PRDM4	100	96.629	ENSSTOG00000016168	PRDM4	100	96.629	Ictidomys_tridecemlineatus
ENSCSAG00000002896	PRDM4	82	93.011	ENSJJAG00000022448	-	95	93.011	Jaculus_jaculus
ENSCSAG00000002896	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	73.020	Latimeria_chalumnae
ENSCSAG00000002896	PRDM4	78	41.953	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSCSAG00000002896	PRDM4	98	96.574	ENSLAFG00000001483	PRDM4	100	96.574	Loxodonta_africana
ENSCSAG00000002896	PRDM4	100	99.875	ENSMFAG00000041862	PRDM4	100	99.875	Macaca_fascicularis
ENSCSAG00000002896	PRDM4	100	99.875	ENSMMUG00000015550	PRDM4	100	99.875	Macaca_mulatta
ENSCSAG00000002896	PRDM4	100	99.625	ENSMNEG00000032319	PRDM4	100	99.625	Macaca_nemestrina
ENSCSAG00000002896	PRDM4	100	99.750	ENSMLEG00000039607	PRDM4	100	99.750	Mandrillus_leucophaeus
ENSCSAG00000002896	PRDM4	99	79.500	ENSMGAG00000012815	PRDM4	100	78.875	Meleagris_gallopavo
ENSCSAG00000002896	PRDM4	100	96.504	ENSMICG00000007807	PRDM4	100	96.504	Microcebus_murinus
ENSCSAG00000002896	PRDM4	99	94.110	ENSMOCG00000000753	Prdm4	99	93.860	Microtus_ochrogaster
ENSCSAG00000002896	PRDM4	99	94.479	ENSMUSG00000035529	Prdm4	100	94.228	Mus_musculus
ENSCSAG00000002896	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSCSAG00000002896	PRDM4	99	95.107	MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	Mus_spretus
ENSCSAG00000002896	PRDM4	99	91.147	ENSMPUG00000012238	PRDM4	99	91.147	Mustela_putorius_furo
ENSCSAG00000002896	PRDM4	99	96.992	ENSMLUG00000000767	PRDM4	99	96.992	Myotis_lucifugus
ENSCSAG00000002896	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSCSAG00000002896	PRDM4	100	99.501	ENSNLEG00000006748	PRDM4	100	99.501	Nomascus_leucogenys
ENSCSAG00000002896	PRDM4	89	89.202	ENSMEUG00000004495	PRDM4	89	89.202	Notamacropus_eugenii
ENSCSAG00000002896	PRDM4	88	95.238	ENSOPRG00000010192	PRDM4	89	95.238	Ochotona_princeps
ENSCSAG00000002896	PRDM4	99	90.375	ENSODEG00000014750	PRDM4	99	90.250	Octodon_degus
ENSCSAG00000002896	PRDM4	100	90.886	ENSOANG00000005526	PRDM4	100	90.886	Ornithorhynchus_anatinus
ENSCSAG00000002896	PRDM4	93	96.567	ENSOCUG00000012859	PRDM4	96	96.567	Oryctolagus_cuniculus
ENSCSAG00000002896	PRDM4	99	97.742	ENSOGAG00000011945	PRDM4	100	97.742	Otolemur_garnettii
ENSCSAG00000002896	PRDM4	100	96.629	ENSOARG00000017955	PRDM4	100	96.629	Ovis_aries
ENSCSAG00000002896	PRDM4	100	99.625	ENSPPAG00000038438	PRDM4	100	99.625	Pan_paniscus
ENSCSAG00000002896	PRDM4	100	97.753	ENSPPRG00000004144	PRDM4	100	97.753	Panthera_pardus
ENSCSAG00000002896	PRDM4	100	97.753	ENSPTIG00000005847	PRDM4	100	97.753	Panthera_tigris_altaica
ENSCSAG00000002896	PRDM4	100	99.625	ENSPTRG00000005400	PRDM4	100	99.625	Pan_troglodytes
ENSCSAG00000002896	PRDM4	100	99.875	ENSPANG00000022084	PRDM4	100	99.875	Papio_anubis
ENSCSAG00000002896	PRDM4	99	59.691	ENSPKIG00000000875	prdm4	99	60.404	Paramormyrops_kingsleyae
ENSCSAG00000002896	PRDM4	91	81.559	ENSPSIG00000012066	PRDM4	100	81.559	Pelodiscus_sinensis
ENSCSAG00000002896	PRDM4	99	95.483	ENSPEMG00000014598	Prdm4	100	95.483	Peromyscus_maniculatus_bairdii
ENSCSAG00000002896	PRDM4	100	88.930	ENSPCIG00000009471	PRDM4	100	88.930	Phascolarctos_cinereus
ENSCSAG00000002896	PRDM4	100	99.501	ENSPPYG00000004913	PRDM4	100	99.501	Pongo_abelii
ENSCSAG00000002896	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSCSAG00000002896	PRDM4	100	96.754	ENSPCOG00000021060	PRDM4	100	96.754	Propithecus_coquereli
ENSCSAG00000002896	PRDM4	100	96.758	ENSPVAG00000001596	PRDM4	100	96.758	Pteropus_vampyrus
ENSCSAG00000002896	PRDM4	99	93.860	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSCSAG00000002896	PRDM4	100	99.625	ENSRBIG00000035488	PRDM4	100	99.625	Rhinopithecus_bieti
ENSCSAG00000002896	PRDM4	100	99.750	ENSRROG00000012779	PRDM4	100	99.750	Rhinopithecus_roxellana
ENSCSAG00000002896	PRDM4	100	99.001	ENSSBOG00000000403	PRDM4	100	99.001	Saimiri_boliviensis_boliviensis
ENSCSAG00000002896	PRDM4	99	63.670	ENSSFOG00015023358	prdm4	99	63.670	Scleropages_formosus
ENSCSAG00000002896	PRDM4	100	97.004	ENSSSCG00000000160	PRDM4	100	97.004	Sus_scrofa
ENSCSAG00000002896	PRDM4	99	87.594	ENSTGUG00000010962	-	99	87.093	Taeniopygia_guttata
ENSCSAG00000002896	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSCSAG00000002896	PRDM4	100	96.629	ENSTTRG00000011056	PRDM4	100	96.629	Tursiops_truncatus
ENSCSAG00000002896	PRDM4	100	97.628	ENSUAMG00000022796	PRDM4	100	97.628	Ursus_americanus
ENSCSAG00000002896	PRDM4	100	97.628	ENSUMAG00000017231	PRDM4	100	97.628	Ursus_maritimus
ENSCSAG00000002896	PRDM4	99	97.491	ENSVPAG00000002215	PRDM4	100	97.491	Vicugna_pacos
ENSCSAG00000002896	PRDM4	100	97.253	ENSVVUG00000023397	PRDM4	100	97.253	Vulpes_vulpes