EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000005276 (Gene tree)
Gene ID: 103234195
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 39019 bases
Position: chr6:17291175-17330193
Accession: 103234195
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000001590	UPF1_Zn_bind	PF09416.10	4.5e-75	1	1
ENSCSAP00000001590	ResIII	PF04851.15	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000003309	UPF1-201	6787	-	ENSCSAP00000001590	1118 (aa)	XP_007994030	A0A0D9QZ01

Gene Model

Click here to download ENSCSAG00000005276's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03013	RNA transport	KEGG
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000005276's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000005276	UPF1	100	99.911	ENSG00000005007	UPF1	100	99.911	Homo_sapiens
ENSCSAG00000005276	UPF1	100	91.192	ENSAPOG00000023773	upf1	100	91.281	Acanthochromis_polyacanthus
ENSCSAG00000005276	UPF1	100	92.507	ENSAPOG00000010916	-	100	92.507	Acanthochromis_polyacanthus
ENSCSAG00000005276	UPF1	100	97.352	ENSAMEG00000011474	UPF1	100	97.352	Ailuropoda_melanoleuca
ENSCSAG00000005276	UPF1	100	91.022	ENSACIG00000019949	upf1	100	91.370	Amphilophus_citrinellus
ENSCSAG00000005276	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSCSAG00000005276	UPF1	100	92.596	ENSAOCG00000006352	-	100	92.596	Amphiprion_ocellaris
ENSCSAG00000005276	UPF1	100	90.706	ENSAOCG00000018519	upf1	100	91.278	Amphiprion_ocellaris
ENSCSAG00000005276	UPF1	100	92.596	ENSAPEG00000006292	-	100	92.596	Amphiprion_percula
ENSCSAG00000005276	UPF1	100	90.706	ENSAPEG00000016344	upf1	100	91.278	Amphiprion_percula
ENSCSAG00000005276	UPF1	100	89.886	ENSATEG00000017867	upf1	100	90.677	Anabas_testudineus
ENSCSAG00000005276	UPF1	100	92.596	ENSATEG00000016606	-	100	92.596	Anabas_testudineus
ENSCSAG00000005276	UPF1	93	97.907	ENSAPLG00000009175	UPF1	99	97.907	Anas_platyrhynchos
ENSCSAG00000005276	UPF1	96	95.841	ENSANAG00000024107	UPF1	97	95.841	Aotus_nancymaae
ENSCSAG00000005276	UPF1	100	90.756	ENSACLG00000007181	upf1	100	91.103	Astatotilapia_calliptera
ENSCSAG00000005276	UPF1	100	92.328	ENSACLG00000022630	-	100	92.239	Astatotilapia_calliptera
ENSCSAG00000005276	UPF1	100	92.959	ENSAMXG00000042187	upf1	100	93.405	Astyanax_mexicanus
ENSCSAG00000005276	UPF1	100	98.142	ENSBTAG00000020922	UPF1	100	98.142	Bos_taurus
ENSCSAG00000005276	UPF1	89	50.639	WBGene00004880	smg-2	99	48.029	Caenorhabditis_elegans
ENSCSAG00000005276	UPF1	100	98.937	ENSCJAG00000019627	UPF1	100	98.937	Callithrix_jacchus
ENSCSAG00000005276	UPF1	100	98.584	ENSCAFG00000014578	UPF1	100	98.584	Canis_familiaris
ENSCSAG00000005276	UPF1	100	99.553	ENSCAFG00020012347	UPF1	100	99.553	Canis_lupus_dingo
ENSCSAG00000005276	UPF1	100	99.106	ENSCHIG00000011018	UPF1	100	99.106	Capra_hircus
ENSCSAG00000005276	UPF1	96	97.127	ENSTSYG00000008877	UPF1	99	97.127	Carlito_syrichta
ENSCSAG00000005276	UPF1	93	98.194	ENSCAPG00000005758	UPF1	95	98.194	Cavia_aperea
ENSCSAG00000005276	UPF1	100	95.933	ENSCPOG00000025463	UPF1	100	95.933	Cavia_porcellus
ENSCSAG00000005276	UPF1	100	99.911	ENSCCAG00000032175	UPF1	100	99.911	Cebus_capucinus
ENSCSAG00000005276	UPF1	93	98.950	ENSCATG00000040306	UPF1	98	98.950	Cercocebus_atys
ENSCSAG00000005276	UPF1	96	97.320	ENSCLAG00000004037	UPF1	100	98.574	Chinchilla_lanigera
ENSCSAG00000005276	UPF1	100	96.883	ENSCPBG00000012513	UPF1	100	96.883	Chrysemys_picta_bellii
ENSCSAG00000005276	UPF1	78	78.236	ENSCING00000021399	-	99	78.236	Ciona_intestinalis
ENSCSAG00000005276	UPF1	99	71.972	ENSCSAVG00000006533	-	99	71.972	Ciona_savignyi
ENSCSAG00000005276	UPF1	95	98.037	ENSCANG00000029819	UPF1	99	98.037	Colobus_angolensis_palliatus
ENSCSAG00000005276	UPF1	100	98.479	ENSCGRG00001021067	Upf1	100	98.479	Cricetulus_griseus_chok1gshd
ENSCSAG00000005276	UPF1	95	96.379	ENSCGRG00000013480	Upf1	99	96.379	Cricetulus_griseus_crigri
ENSCSAG00000005276	UPF1	100	92.500	ENSCSEG00000016159	-	100	92.411	Cynoglossus_semilaevis
ENSCSAG00000005276	UPF1	100	86.173	ENSCSEG00000017239	upf1	100	86.262	Cynoglossus_semilaevis
ENSCSAG00000005276	UPF1	100	92.328	ENSCVAG00000010561	upf1	100	92.239	Cyprinodon_variegatus
ENSCSAG00000005276	UPF1	100	92.781	ENSDARG00000016302	upf1	100	93.226	Danio_rerio
ENSCSAG00000005276	UPF1	95	94.855	ENSDORG00000009984	Upf1	95	95.731	Dipodomys_ordii
ENSCSAG00000005276	UPF1	85	70.941	FBgn0030354	Upf1	84	67.433	Drosophila_melanogaster
ENSCSAG00000005276	UPF1	55	85.737	ENSEBUG00000010069	upf1	96	85.413	Eptatretus_burgeri
ENSCSAG00000005276	UPF1	100	99.106	ENSEASG00005006549	UPF1	100	99.106	Equus_asinus_asinus
ENSCSAG00000005276	UPF1	100	99.106	ENSECAG00000010639	UPF1	100	99.106	Equus_caballus
ENSCSAG00000005276	UPF1	100	90.240	ENSELUG00000020917	upf1	100	90.506	Esox_lucius
ENSCSAG00000005276	UPF1	100	91.667	ENSELUG00000012916	-	100	91.585	Esox_lucius
ENSCSAG00000005276	UPF1	100	98.496	ENSFCAG00000009757	UPF1	100	98.496	Felis_catus
ENSCSAG00000005276	UPF1	96	96.664	ENSFALG00000009312	UPF1	99	96.664	Ficedula_albicollis
ENSCSAG00000005276	UPF1	97	96.059	ENSFDAG00000014816	UPF1	100	98.479	Fukomys_damarensis
ENSCSAG00000005276	UPF1	85	95.477	ENSFHEG00000016276	-	96	95.477	Fundulus_heteroclitus
ENSCSAG00000005276	UPF1	100	88.407	ENSFHEG00000006428	upf1	100	88.319	Fundulus_heteroclitus
ENSCSAG00000005276	UPF1	100	91.078	ENSGMOG00000007541	upf1	100	91.519	Gadus_morhua
ENSCSAG00000005276	UPF1	100	97.587	ENSGALG00000003220	UPF1	100	97.587	Gallus_gallus
ENSCSAG00000005276	UPF1	100	92.232	ENSGAFG00000004831	upf1	100	92.143	Gambusia_affinis
ENSCSAG00000005276	UPF1	62	95.389	ENSGAFG00000015443	-	88	93.026	Gambusia_affinis
ENSCSAG00000005276	UPF1	100	97.143	ENSGAGG00000022217	UPF1	100	97.143	Gopherus_agassizii
ENSCSAG00000005276	UPF1	93	100.000	ENSGGOG00000002608	UPF1	99	100.000	Gorilla_gorilla
ENSCSAG00000005276	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCSAG00000005276	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCSAG00000005276	UPF1	100	98.051	ENSHGLG00000010900	UPF1	100	98.051	Heterocephalus_glaber_female
ENSCSAG00000005276	UPF1	96	94.737	ENSHGLG00100005904	UPF1	99	94.737	Heterocephalus_glaber_male
ENSCSAG00000005276	UPF1	100	91.518	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSCSAG00000005276	UPF1	100	93.405	ENSIPUG00000005108	UPF1	100	93.761	Ictalurus_punctatus
ENSCSAG00000005276	UPF1	100	99.553	ENSSTOG00000009196	UPF1	100	99.553	Ictidomys_tridecemlineatus
ENSCSAG00000005276	UPF1	100	97.254	ENSJJAG00000023151	Upf1	100	97.254	Jaculus_jaculus
ENSCSAG00000005276	UPF1	100	92.685	ENSKMAG00000004962	upf1	100	92.596	Kryptolebias_marmoratus
ENSCSAG00000005276	UPF1	100	89.339	ENSLBEG00000014862	upf1	100	90.485	Labrus_bergylta
ENSCSAG00000005276	UPF1	100	92.246	ENSLBEG00000027848	-	100	92.246	Labrus_bergylta
ENSCSAG00000005276	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCSAG00000005276	UPF1	100	95.000	ENSLOCG00000002072	upf1	100	95.000	Lepisosteus_oculatus
ENSCSAG00000005276	UPF1	100	97.788	ENSLAFG00000014963	UPF1	100	97.788	Loxodonta_africana
ENSCSAG00000005276	UPF1	100	98.937	ENSMFAG00000037748	UPF1	100	98.937	Macaca_fascicularis
ENSCSAG00000005276	UPF1	100	98.937	ENSMMUG00000023286	UPF1	100	98.937	Macaca_mulatta
ENSCSAG00000005276	UPF1	100	98.937	ENSMNEG00000000046	UPF1	100	98.937	Macaca_nemestrina
ENSCSAG00000005276	UPF1	93	98.954	ENSMLEG00000028404	UPF1	100	98.954	Mandrillus_leucophaeus
ENSCSAG00000005276	UPF1	100	91.622	ENSMAMG00000006231	-	100	92.068	Mastacembelus_armatus
ENSCSAG00000005276	UPF1	100	89.622	ENSMAMG00000006229	upf1	100	90.589	Mastacembelus_armatus
ENSCSAG00000005276	UPF1	100	89.719	ENSMZEG00005003489	upf1	100	90.901	Maylandia_zebra
ENSCSAG00000005276	UPF1	100	92.328	ENSMZEG00005016386	-	100	92.239	Maylandia_zebra
ENSCSAG00000005276	UPF1	93	97.433	ENSMGAG00000004745	UPF1	100	97.433	Meleagris_gallopavo
ENSCSAG00000005276	UPF1	95	96.382	ENSMAUG00000011398	Upf1	97	96.382	Mesocricetus_auratus
ENSCSAG00000005276	UPF1	100	99.463	ENSMICG00000001659	UPF1	100	99.463	Microcebus_murinus
ENSCSAG00000005276	UPF1	100	97.343	ENSMOCG00000005699	Upf1	100	97.343	Microtus_ochrogaster
ENSCSAG00000005276	UPF1	93	92.514	ENSMMOG00000007537	-	99	92.610	Mola_mola
ENSCSAG00000005276	UPF1	100	90.527	ENSMMOG00000007881	upf1	100	90.982	Mola_mola
ENSCSAG00000005276	UPF1	100	97.176	ENSMODG00000003689	UPF1	100	97.176	Monodelphis_domestica
ENSCSAG00000005276	UPF1	100	91.297	ENSMALG00000018100	-	100	91.297	Monopterus_albus
ENSCSAG00000005276	UPF1	100	90.706	ENSMALG00000000144	upf1	100	90.974	Monopterus_albus
ENSCSAG00000005276	UPF1	100	98.390	MGP_CAROLIEiJ_G0031142	Upf1	100	98.390	Mus_caroli
ENSCSAG00000005276	UPF1	100	98.390	ENSMUSG00000058301	Upf1	100	98.390	Mus_musculus
ENSCSAG00000005276	UPF1	100	98.390	MGP_PahariEiJ_G0021607	Upf1	100	98.390	Mus_pahari
ENSCSAG00000005276	UPF1	100	98.390	MGP_SPRETEiJ_G0032260	Upf1	100	98.390	Mus_spretus
ENSCSAG00000005276	UPF1	100	99.553	ENSMPUG00000015516	UPF1	100	99.553	Mustela_putorius_furo
ENSCSAG00000005276	UPF1	99	99.103	ENSMLUG00000012122	UPF1	99	99.103	Myotis_lucifugus
ENSCSAG00000005276	UPF1	100	97.609	ENSNGAG00000024107	Upf1	100	97.609	Nannospalax_galili
ENSCSAG00000005276	UPF1	100	89.067	ENSNBRG00000000670	upf1	100	89.413	Neolamprologus_brichardi
ENSCSAG00000005276	UPF1	100	88.985	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSCSAG00000005276	UPF1	93	93.156	ENSNLEG00000006062	UPF1	100	93.156	Nomascus_leucogenys
ENSCSAG00000005276	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSCSAG00000005276	UPF1	93	91.547	ENSOPRG00000014018	UPF1	100	91.547	Ochotona_princeps
ENSCSAG00000005276	UPF1	100	96.900	ENSODEG00000012426	UPF1	100	96.900	Octodon_degus
ENSCSAG00000005276	UPF1	100	92.417	ENSONIG00000012729	-	100	92.328	Oreochromis_niloticus
ENSCSAG00000005276	UPF1	100	89.982	ENSONIG00000010452	upf1	100	91.166	Oreochromis_niloticus
ENSCSAG00000005276	UPF1	100	96.378	ENSOANG00000004568	UPF1	100	96.378	Ornithorhynchus_anatinus
ENSCSAG00000005276	UPF1	100	92.417	ENSORLG00000008453	upf1	100	92.417	Oryzias_latipes
ENSCSAG00000005276	UPF1	100	92.246	ENSORLG00020014758	upf1	100	92.246	Oryzias_latipes_hni
ENSCSAG00000005276	UPF1	100	92.246	ENSORLG00015010165	upf1	100	92.246	Oryzias_latipes_hsok
ENSCSAG00000005276	UPF1	100	92.507	ENSOMEG00000003665	upf1	100	92.417	Oryzias_melastigma
ENSCSAG00000005276	UPF1	100	99.821	ENSOGAG00000012866	UPF1	100	99.821	Otolemur_garnettii
ENSCSAG00000005276	UPF1	96	96.228	ENSOARG00000010739	UPF1	100	96.228	Ovis_aries
ENSCSAG00000005276	UPF1	95	98.037	ENSPPAG00000043884	UPF1	97	98.037	Pan_paniscus
ENSCSAG00000005276	UPF1	100	98.496	ENSPPRG00000023470	UPF1	100	98.496	Panthera_pardus
ENSCSAG00000005276	UPF1	93	97.596	ENSPTIG00000010159	UPF1	99	97.596	Panthera_tigris_altaica
ENSCSAG00000005276	UPF1	100	98.937	ENSPTRG00000010721	UPF1	100	98.937	Pan_troglodytes
ENSCSAG00000005276	UPF1	100	98.937	ENSPANG00000008847	UPF1	100	98.937	Papio_anubis
ENSCSAG00000005276	UPF1	91	94.634	ENSPKIG00000006069	upf1	99	92.155	Paramormyrops_kingsleyae
ENSCSAG00000005276	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCSAG00000005276	UPF1	100	89.235	ENSPMGG00000017327	upf1	100	89.343	Periophthalmus_magnuspinnatus
ENSCSAG00000005276	UPF1	100	97.520	ENSPEMG00000001085	Upf1	100	97.520	Peromyscus_maniculatus_bairdii
ENSCSAG00000005276	UPF1	100	86.999	ENSPMAG00000001206	upf1	100	86.436	Petromyzon_marinus
ENSCSAG00000005276	UPF1	100	98.660	ENSPCIG00000006156	UPF1	100	98.660	Phascolarctos_cinereus
ENSCSAG00000005276	UPF1	100	89.292	ENSPLAG00000018155	-	100	89.204	Poecilia_latipinna
ENSCSAG00000005276	UPF1	100	92.321	ENSPLAG00000016232	-	100	92.232	Poecilia_latipinna
ENSCSAG00000005276	UPF1	100	92.239	ENSPMEG00000016319	-	100	92.150	Poecilia_mexicana
ENSCSAG00000005276	UPF1	100	89.840	ENSPMEG00000011443	-	100	89.750	Poecilia_mexicana
ENSCSAG00000005276	UPF1	100	92.143	ENSPREG00000011247	-	100	92.054	Poecilia_reticulata
ENSCSAG00000005276	UPF1	100	89.735	ENSPREG00000009940	upf1	100	89.735	Poecilia_reticulata
ENSCSAG00000005276	UPF1	100	93.977	ENSPPYG00000009752	UPF1	100	93.977	Pongo_abelii
ENSCSAG00000005276	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCSAG00000005276	UPF1	100	98.406	ENSPCOG00000023813	UPF1	100	98.406	Propithecus_coquereli
ENSCSAG00000005276	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCSAG00000005276	UPF1	100	89.719	ENSPNYG00000003694	upf1	100	90.901	Pundamilia_nyererei
ENSCSAG00000005276	UPF1	100	92.328	ENSPNYG00000016731	-	100	92.239	Pundamilia_nyererei
ENSCSAG00000005276	UPF1	100	92.959	ENSPNAG00000025614	upf1	100	93.405	Pygocentrus_nattereri
ENSCSAG00000005276	UPF1	100	98.390	ENSRNOG00000020134	Upf1	100	98.390	Rattus_norvegicus
ENSCSAG00000005276	UPF1	95	95.701	ENSRBIG00000013894	UPF1	98	99.781	Rhinopithecus_bieti
ENSCSAG00000005276	UPF1	95	98.037	ENSRROG00000040935	UPF1	98	99.781	Rhinopithecus_roxellana
ENSCSAG00000005276	UPF1	75	55.962	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSCSAG00000005276	UPF1	96	96.858	ENSSBOG00000023632	UPF1	98	96.858	Saimiri_boliviensis_boliviensis
ENSCSAG00000005276	UPF1	93	97.816	ENSSHAG00000010499	UPF1	100	97.816	Sarcophilus_harrisii
ENSCSAG00000005276	UPF1	100	94.826	ENSSFOG00015021095	upf1	99	97.214	Scleropages_formosus
ENSCSAG00000005276	UPF1	100	92.424	ENSSMAG00000021018	-	100	92.424	Scophthalmus_maximus
ENSCSAG00000005276	UPF1	100	88.987	ENSSMAG00000005055	upf1	100	89.789	Scophthalmus_maximus
ENSCSAG00000005276	UPF1	100	92.602	ENSSDUG00000009629	-	100	92.602	Seriola_dumerili
ENSCSAG00000005276	UPF1	100	89.886	ENSSDUG00000013320	upf1	100	90.853	Seriola_dumerili
ENSCSAG00000005276	UPF1	100	92.602	ENSSLDG00000006878	-	100	92.602	Seriola_lalandi_dorsalis
ENSCSAG00000005276	UPF1	100	90.683	ENSSLDG00000020868	upf1	100	91.143	Seriola_lalandi_dorsalis
ENSCSAG00000005276	UPF1	100	97.051	ENSSPUG00000010538	UPF1	100	97.051	Sphenodon_punctatus
ENSCSAG00000005276	UPF1	100	92.768	ENSSPAG00000011521	-	100	92.679	Stegastes_partitus
ENSCSAG00000005276	UPF1	100	89.196	ENSSPAG00000000003	upf1	100	89.136	Stegastes_partitus
ENSCSAG00000005276	UPF1	100	99.017	ENSSSCG00000039301	UPF1	100	99.017	Sus_scrofa
ENSCSAG00000005276	UPF1	83	89.490	ENSTGUG00000001057	UPF1	100	95.133	Taeniopygia_guttata
ENSCSAG00000005276	UPF1	100	91.429	ENSTRUG00000005131	-	100	91.429	Takifugu_rubripes
ENSCSAG00000005276	UPF1	100	90.438	ENSTRUG00000000150	upf1	100	90.438	Takifugu_rubripes
ENSCSAG00000005276	UPF1	100	95.353	ENSTTRG00000011544	UPF1	100	94.727	Tursiops_truncatus
ENSCSAG00000005276	UPF1	100	99.464	ENSUAMG00000007093	UPF1	100	99.464	Ursus_americanus
ENSCSAG00000005276	UPF1	95	98.399	ENSUMAG00000006652	UPF1	99	99.896	Ursus_maritimus
ENSCSAG00000005276	UPF1	100	99.553	ENSVVUG00000007797	UPF1	100	99.553	Vulpes_vulpes
ENSCSAG00000005276	UPF1	100	82.203	ENSXETG00000013602	upf1	100	82.203	Xenopus_tropicalis
ENSCSAG00000005276	UPF1	97	89.658	ENSXCOG00000015275	-	96	89.566	Xiphophorus_couchianus
ENSCSAG00000005276	UPF1	92	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSCSAG00000005276	UPF1	100	89.911	ENSXMAG00000001703	-	100	89.821	Xiphophorus_maculatus
ENSCSAG00000005276	UPF1	100	92.061	ENSXMAG00000002540	-	100	91.971	Xiphophorus_maculatus