EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAG00000006382 (Gene tree)
Gene ID: 103223331
Gene Symbol: APOBEC3F
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3F
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 33333 bases
Position: chr19:21665117-21698449
Accession: 17356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000002677	APOBEC_N	PF08210.11	2.3e-103	1	2
ENSCSAP00000002677	APOBEC_N	PF08210.11	2.3e-103	2	2
ENSCSAP00000002677	APOBEC_C	PF05240.14	1e-61	1	2
ENSCSAP00000002677	APOBEC_C	PF05240.14	1e-61	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000004434	APOBEC3F-201	4423	-	ENSCSAP00000002677	370 (aa)	-	A0A0D9R238

Gene Model

Click here to download ENSCSAG00000006382's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000006382's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAG00000006382	APOBEC3F	98	32.500	ENSCSAG00000011177	APOBEC2	100	30.932
ENSCSAG00000006382	APOBEC3F	100	73.656	ENSCSAG00000006402	APOBEC3C	100	73.656
ENSCSAG00000006382	APOBEC3F	98	40.500	ENSCSAG00000006376	APOBEC3G	89	40.500
ENSCSAG00000006382	APOBEC3F	89	34.118	ENSCSAG00000006371	APOBEC3H	78	34.118
ENSCSAG00000006382	APOBEC3F	73	38.667	ENSCSAG00000018401	-	89	38.667
ENSCSAG00000006382	APOBEC3F	94	41.379	ENSCSAG00000009663	AICDA	89	41.379
ENSCSAG00000006382	APOBEC3F	100	60.471	ENSCSAG00000006445	-	77	60.471

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000006382	APOBEC3F	100	81.818	ENSG00000128394	APOBEC3F	100	81.818	Homo_sapiens
ENSCSAG00000006382	APOBEC3F	100	75.806	ENSG00000244509	APOBEC3C	100	75.806	Homo_sapiens
ENSCSAG00000006382	APOBEC3F	100	78.495	ENSG00000243811	APOBEC3D	100	78.495	Homo_sapiens
ENSCSAG00000006382	APOBEC3F	99	72.386	ENSANAG00000030088	-	99	72.386	Aotus_nancymaae
ENSCSAG00000006382	APOBEC3F	70	68.939	ENSCJAG00000015317	-	100	68.939	Callithrix_jacchus
ENSCSAG00000006382	APOBEC3F	98	47.059	ENSCAFG00020002615	-	98	47.059	Canis_lupus_dingo
ENSCSAG00000006382	APOBEC3F	99	53.297	ENSTSYG00000034260	-	98	53.297	Carlito_syrichta
ENSCSAG00000006382	APOBEC3F	97	56.284	ENSTSYG00000028254	-	99	56.284	Carlito_syrichta
ENSCSAG00000006382	APOBEC3F	98	52.198	ENSTSYG00000030036	-	99	52.198	Carlito_syrichta
ENSCSAG00000006382	APOBEC3F	99	67.347	ENSCCAG00000030932	-	89	67.347	Cebus_capucinus
ENSCSAG00000006382	APOBEC3F	100	75.269	ENSCATG00000043226	APOBEC3C	100	75.269	Cercocebus_atys
ENSCSAG00000006382	APOBEC3F	98	94.565	ENSCATG00000033502	-	95	94.565	Cercocebus_atys
ENSCSAG00000006382	APOBEC3F	98	90.217	ENSCANG00000033269	-	99	90.217	Colobus_angolensis_palliatus
ENSCSAG00000006382	APOBEC3F	99	86.450	ENSCANG00000031957	-	99	86.450	Colobus_angolensis_palliatus
ENSCSAG00000006382	APOBEC3F	100	74.194	ENSCANG00000039177	APOBEC3C	100	74.194	Colobus_angolensis_palliatus
ENSCSAG00000006382	APOBEC3F	100	84.225	ENSCANG00000032904	-	100	84.225	Colobus_angolensis_palliatus
ENSCSAG00000006382	APOBEC3F	95	34.540	ENSDNOG00000044642	-	99	34.540	Dasypus_novemcinctus
ENSCSAG00000006382	APOBEC3F	99	46.939	ENSEASG00005018641	-	96	46.939	Equus_asinus_asinus
ENSCSAG00000006382	APOBEC3F	99	48.108	ENSECAG00000006071	-	100	43.443	Equus_caballus
ENSCSAG00000006382	APOBEC3F	100	74.731	ENSGGOG00000036587	-	100	74.731	Gorilla_gorilla
ENSCSAG00000006382	APOBEC3F	100	81.551	ENSGGOG00000038678	APOBEC3F	100	81.551	Gorilla_gorilla
ENSCSAG00000006382	APOBEC3F	100	44.086	ENSHGLG00000017315	-	90	44.086	Heterocephalus_glaber_female
ENSCSAG00000006382	APOBEC3F	100	44.086	ENSHGLG00100003105	-	93	44.086	Heterocephalus_glaber_male
ENSCSAG00000006382	APOBEC3F	100	82.353	ENSMFAG00000002331	-	100	82.353	Macaca_fascicularis
ENSCSAG00000006382	APOBEC3F	100	83.155	ENSMFAG00000004037	APOBEC3F	100	83.155	Macaca_fascicularis
ENSCSAG00000006382	APOBEC3F	100	75.806	ENSMFAG00000016792	APOBEC3C	100	75.806	Macaca_fascicularis
ENSCSAG00000006382	APOBEC3F	99	91.892	ENSMMUG00000004017	APOBEC3F	100	90.642	Macaca_mulatta
ENSCSAG00000006382	APOBEC3F	99	76.630	ENSMMUG00000004018	APOBEC3C	97	76.630	Macaca_mulatta
ENSCSAG00000006382	APOBEC3F	100	82.785	ENSMNEG00000043316	APOBEC3D	100	82.785	Macaca_nemestrina
ENSCSAG00000006382	APOBEC3F	100	74.194	ENSMNEG00000045196	APOBEC3C	100	74.194	Macaca_nemestrina
ENSCSAG00000006382	APOBEC3F	100	85.027	ENSMLEG00000029642	APOBEC3F	100	85.027	Mandrillus_leucophaeus
ENSCSAG00000006382	APOBEC3F	100	75.269	ENSMLEG00000036992	APOBEC3C	100	75.269	Mandrillus_leucophaeus
ENSCSAG00000006382	APOBEC3F	99	54.595	ENSMICG00000042615	-	88	54.595	Microcebus_murinus
ENSCSAG00000006382	APOBEC3F	99	44.681	ENSMLUG00000023676	-	99	44.681	Myotis_lucifugus
ENSCSAG00000006382	APOBEC3F	100	72.043	ENSNLEG00000028392	APOBEC3C	100	72.043	Nomascus_leucogenys
ENSCSAG00000006382	APOBEC3F	100	73.057	ENSNLEG00000035811	-	100	73.057	Nomascus_leucogenys
ENSCSAG00000006382	APOBEC3F	99	44.301	ENSOGAG00000032498	-	99	44.301	Otolemur_garnettii
ENSCSAG00000006382	APOBEC3F	99	43.014	ENSOGAG00000033404	-	100	43.014	Otolemur_garnettii
ENSCSAG00000006382	APOBEC3F	99	45.503	ENSOGAG00000030300	-	99	45.503	Otolemur_garnettii
ENSCSAG00000006382	APOBEC3F	100	75.269	ENSPPAG00000014118	APOBEC3C	100	75.269	Pan_paniscus
ENSCSAG00000006382	APOBEC3F	100	76.882	ENSPPAG00000028218	-	100	76.882	Pan_paniscus
ENSCSAG00000006382	APOBEC3F	98	49.457	ENSPPRG00000003726	-	98	49.457	Panthera_pardus
ENSCSAG00000006382	APOBEC3F	98	85.340	ENSPTRG00000014385	APOBEC3C	98	85.340	Pan_troglodytes
ENSCSAG00000006382	APOBEC3F	100	76.882	ENSPTRG00000041588	APOBEC3D	100	76.882	Pan_troglodytes
ENSCSAG00000006382	APOBEC3F	99	85.124	ENSPANG00000010775	APOBEC3F	100	85.124	Papio_anubis
ENSCSAG00000006382	APOBEC3F	100	71.505	ENSPPYG00000011832	APOBEC3C	100	71.505	Pongo_abelii
ENSCSAG00000006382	APOBEC3F	70	56.589	ENSPCOG00000022067	-	98	56.589	Propithecus_coquereli
ENSCSAG00000006382	APOBEC3F	68	60.800	ENSPCOG00000018072	-	95	60.800	Propithecus_coquereli
ENSCSAG00000006382	APOBEC3F	83	48.780	ENSPVAG00000009461	-	74	48.780	Pteropus_vampyrus
ENSCSAG00000006382	APOBEC3F	99	85.124	ENSRBIG00000030323	-	100	85.124	Rhinopithecus_bieti
ENSCSAG00000006382	APOBEC3F	100	78.108	ENSRBIG00000030834	-	100	78.108	Rhinopithecus_bieti
ENSCSAG00000006382	APOBEC3F	100	80.000	ENSRBIG00000042297	-	99	92.994	Rhinopithecus_bieti
ENSCSAG00000006382	APOBEC3F	100	80.000	ENSRROG00000029996	-	100	80.000	Rhinopithecus_roxellana
ENSCSAG00000006382	APOBEC3F	100	80.749	ENSRROG00000028557	-	100	80.749	Rhinopithecus_roxellana
ENSCSAG00000006382	APOBEC3F	100	83.690	ENSRROG00000029045	APOBEC3C	100	83.690	Rhinopithecus_roxellana
ENSCSAG00000006382	APOBEC3F	100	70.430	ENSSBOG00000032780	-	100	71.242	Saimiri_boliviensis_boliviensis
ENSCSAG00000006382	APOBEC3F	97	44.199	ENSUAMG00000004433	-	100	44.199	Ursus_americanus
ENSCSAG00000006382	APOBEC3F	98	45.109	ENSUMAG00000014441	-	86	45.109	Ursus_maritimus
ENSCSAG00000006382	APOBEC3F	77	51.007	ENSVVUG00000014628	-	91	50.685	Vulpes_vulpes