EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAG00000006402 (Gene tree)
Gene ID: 103223333
Gene Symbol: APOBEC3C
Alias: APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3C
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 3942 bases
Position: chr19:21657702-21661643
Accession: 17353
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000002694	APOBEC_N	PF08210.11	1e-57	1	1
ENSCSAP00000002694	APOBEC_C	PF05240.14	2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000004439	APOBEC3C-201	676	-	ENSCSAP00000002694	190 (aa)	-	A0A0D9R255

Gene Model

Click here to download ENSCSAG00000006402's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000006402's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAG00000006402	APOBEC3C	100	48.947	ENSCSAG00000006445	-	77	48.947
ENSCSAG00000006402	APOBEC3C	74	37.838	ENSCSAG00000018401	-	70	37.838
ENSCSAG00000006402	APOBEC3C	93	35.359	ENSCSAG00000011177	APOBEC2	79	35.359
ENSCSAG00000006402	APOBEC3C	96	35.789	ENSCSAG00000006371	APOBEC3H	86	35.789
ENSCSAG00000006402	APOBEC3C	97	39.683	ENSCSAG00000006376	APOBEC3G	86	39.683
ENSCSAG00000006402	APOBEC3C	91	41.954	ENSCSAG00000009663	AICDA	87	41.954
ENSCSAG00000006402	APOBEC3C	100	73.656	ENSCSAG00000006382	APOBEC3F	100	73.656

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000006402	APOBEC3C	100	72.632	ENSG00000243811	APOBEC3D	100	72.632	Homo_sapiens
ENSCSAG00000006402	APOBEC3C	100	73.656	ENSG00000128394	APOBEC3F	100	73.656	Homo_sapiens
ENSCSAG00000006402	APOBEC3C	100	83.158	ENSG00000244509	APOBEC3C	100	83.158	Homo_sapiens
ENSCSAG00000006402	APOBEC3C	100	67.895	ENSANAG00000030088	-	97	67.204	Aotus_nancymaae
ENSCSAG00000006402	APOBEC3C	69	67.424	ENSCJAG00000015317	-	100	67.424	Callithrix_jacchus
ENSCSAG00000006402	APOBEC3C	98	47.895	ENSCAFG00020002615	-	99	47.895	Canis_lupus_dingo
ENSCSAG00000006402	APOBEC3C	96	48.634	ENSTSYG00000030036	-	99	48.634	Carlito_syrichta
ENSCSAG00000006402	APOBEC3C	96	53.552	ENSTSYG00000028254	-	99	53.552	Carlito_syrichta
ENSCSAG00000006402	APOBEC3C	100	50.273	ENSTSYG00000034260	-	98	50.273	Carlito_syrichta
ENSCSAG00000006402	APOBEC3C	98	66.667	ENSCCAG00000030932	-	84	66.667	Cebus_capucinus
ENSCSAG00000006402	APOBEC3C	100	74.150	ENSCATG00000033502	-	100	74.194	Cercocebus_atys
ENSCSAG00000006402	APOBEC3C	100	88.421	ENSCATG00000043226	APOBEC3C	100	88.421	Cercocebus_atys
ENSCSAG00000006402	APOBEC3C	100	86.842	ENSCANG00000039177	APOBEC3C	100	86.842	Colobus_angolensis_palliatus
ENSCSAG00000006402	APOBEC3C	100	74.731	ENSCANG00000032904	-	100	74.731	Colobus_angolensis_palliatus
ENSCSAG00000006402	APOBEC3C	100	73.656	ENSCANG00000031957	-	100	73.656	Colobus_angolensis_palliatus
ENSCSAG00000006402	APOBEC3C	100	68.280	ENSCANG00000033269	-	99	69.565	Colobus_angolensis_palliatus
ENSCSAG00000006402	APOBEC3C	97	39.785	ENSDNOG00000044642	-	99	39.785	Dasypus_novemcinctus
ENSCSAG00000006402	APOBEC3C	100	42.647	ENSEASG00005018641	-	100	42.647	Equus_asinus_asinus
ENSCSAG00000006402	APOBEC3C	98	47.973	ENSECAG00000006071	-	100	46.703	Equus_caballus
ENSCSAG00000006402	APOBEC3C	100	77.368	ENSGGOG00000036587	-	100	77.368	Gorilla_gorilla
ENSCSAG00000006402	APOBEC3C	100	73.118	ENSGGOG00000038678	APOBEC3F	100	73.118	Gorilla_gorilla
ENSCSAG00000006402	APOBEC3C	98	44.974	ENSHGLG00000017315	-	85	43.850	Heterocephalus_glaber_female
ENSCSAG00000006402	APOBEC3C	98	44.974	ENSHGLG00100003105	-	94	44.974	Heterocephalus_glaber_male
ENSCSAG00000006402	APOBEC3C	100	88.947	ENSMFAG00000016792	APOBEC3C	100	88.947	Macaca_fascicularis
ENSCSAG00000006402	APOBEC3C	100	73.118	ENSMFAG00000004037	APOBEC3F	100	73.118	Macaca_fascicularis
ENSCSAG00000006402	APOBEC3C	100	75.269	ENSMFAG00000002331	-	100	75.269	Macaca_fascicularis
ENSCSAG00000006402	APOBEC3C	97	90.217	ENSMMUG00000004018	APOBEC3C	95	90.217	Macaca_mulatta
ENSCSAG00000006402	APOBEC3C	100	75.269	ENSMMUG00000004017	APOBEC3F	100	75.269	Macaca_mulatta
ENSCSAG00000006402	APOBEC3C	100	90.526	ENSMNEG00000045196	APOBEC3C	100	90.526	Macaca_nemestrina
ENSCSAG00000006402	APOBEC3C	100	75.269	ENSMNEG00000043316	APOBEC3D	100	75.269	Macaca_nemestrina
ENSCSAG00000006402	APOBEC3C	100	88.421	ENSMLEG00000036992	APOBEC3C	100	88.421	Mandrillus_leucophaeus
ENSCSAG00000006402	APOBEC3C	100	73.118	ENSMLEG00000029642	APOBEC3F	100	73.118	Mandrillus_leucophaeus
ENSCSAG00000006402	APOBEC3C	99	54.255	ENSMICG00000042615	-	89	54.255	Microcebus_murinus
ENSCSAG00000006402	APOBEC3C	97	45.550	ENSMLUG00000023676	-	99	45.550	Myotis_lucifugus
ENSCSAG00000006402	APOBEC3C	100	77.895	ENSNLEG00000028392	APOBEC3C	100	77.895	Nomascus_leucogenys
ENSCSAG00000006402	APOBEC3C	100	60.526	ENSNLEG00000035811	-	100	60.526	Nomascus_leucogenys
ENSCSAG00000006402	APOBEC3C	98	43.850	ENSOGAG00000030300	-	97	43.850	Otolemur_garnettii
ENSCSAG00000006402	APOBEC3C	98	44.624	ENSOGAG00000032498	-	99	44.624	Otolemur_garnettii
ENSCSAG00000006402	APOBEC3C	98	45.251	ENSOGAG00000033404	-	100	45.251	Otolemur_garnettii
ENSCSAG00000006402	APOBEC3C	100	74.211	ENSPPAG00000028218	-	100	74.211	Pan_paniscus
ENSCSAG00000006402	APOBEC3C	100	83.158	ENSPPAG00000014118	APOBEC3C	100	83.158	Pan_paniscus
ENSCSAG00000006402	APOBEC3C	97	48.649	ENSPPRG00000003726	-	98	48.649	Panthera_pardus
ENSCSAG00000006402	APOBEC3C	100	74.211	ENSPTRG00000041588	APOBEC3D	100	74.211	Pan_troglodytes
ENSCSAG00000006402	APOBEC3C	100	73.118	ENSPTRG00000014385	APOBEC3C	100	73.118	Pan_troglodytes
ENSCSAG00000006402	APOBEC3C	100	85.263	ENSPANG00000010775	APOBEC3F	100	85.263	Papio_anubis
ENSCSAG00000006402	APOBEC3C	100	80.526	ENSPPYG00000011832	APOBEC3C	100	80.526	Pongo_abelii
ENSCSAG00000006402	APOBEC3C	67	52.344	ENSPCOG00000022067	-	97	52.344	Propithecus_coquereli
ENSCSAG00000006402	APOBEC3C	69	54.887	ENSPCOG00000018072	-	100	54.887	Propithecus_coquereli
ENSCSAG00000006402	APOBEC3C	65	47.154	ENSPVAG00000009461	-	50	47.154	Pteropus_vampyrus
ENSCSAG00000006402	APOBEC3C	100	76.882	ENSRBIG00000030834	-	100	76.882	Rhinopithecus_bieti
ENSCSAG00000006402	APOBEC3C	100	71.667	ENSRBIG00000042297	-	100	71.667	Rhinopithecus_bieti
ENSCSAG00000006402	APOBEC3C	100	84.211	ENSRBIG00000030323	-	100	84.211	Rhinopithecus_bieti
ENSCSAG00000006402	APOBEC3C	100	75.806	ENSRROG00000028557	-	100	75.806	Rhinopithecus_roxellana
ENSCSAG00000006402	APOBEC3C	100	71.111	ENSRROG00000029996	-	100	71.111	Rhinopithecus_roxellana
ENSCSAG00000006402	APOBEC3C	100	84.211	ENSRROG00000029045	APOBEC3C	100	84.211	Rhinopithecus_roxellana
ENSCSAG00000006402	APOBEC3C	100	68.421	ENSSBOG00000032780	-	100	68.421	Saimiri_boliviensis_boliviensis
ENSCSAG00000006402	APOBEC3C	85	49.689	ENSUAMG00000004433	-	89	49.689	Ursus_americanus
ENSCSAG00000006402	APOBEC3C	86	50.610	ENSUMAG00000014441	-	76	50.610	Ursus_maritimus
ENSCSAG00000006402	APOBEC3C	77	49.664	ENSVVUG00000014628	-	91	49.315	Vulpes_vulpes