EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000008142 (Gene tree)
Gene ID: 103228729
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 198150 bases
Position: chr5:13891369-14089518
Accession: 103228729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000004401	R3H	PF01424.22	2.8e-05	1	1
ENSCSAP00000004401	RNA_bind	PF08675.11	5.8e-34	1	1
ENSCSAP00000004401	CAF1	PF04857.20	1e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000006194	PARN-201	2993	XM_007986336	ENSCSAP00000004401	639 (aa)	XP_007984527	A0A0D9R712

Gene Model

Click here to download ENSCSAG00000008142's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000008142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000008142	PARN	100	98.905	ENSG00000140694	PARN	100	100.000	Homo_sapiens
ENSCSAG00000008142	PARN	100	92.969	ENSAMEG00000011208	PARN	100	92.969	Ailuropoda_melanoleuca
ENSCSAG00000008142	PARN	83	76.679	ENSACIG00000000619	parn	83	76.679	Amphilophus_citrinellus
ENSCSAG00000008142	PARN	95	71.732	ENSAOCG00000003465	parn	84	73.604	Amphiprion_ocellaris
ENSCSAG00000008142	PARN	74	77.987	ENSAPEG00000010661	parn	91	77.987	Amphiprion_percula
ENSCSAG00000008142	PARN	95	71.659	ENSATEG00000004661	parn	88	71.659	Anabas_testudineus
ENSCSAG00000008142	PARN	99	85.016	ENSAPLG00000013914	PARN	99	85.016	Anas_platyrhynchos
ENSCSAG00000008142	PARN	100	79.077	ENSACAG00000004973	PARN	100	79.077	Anolis_carolinensis
ENSCSAG00000008142	PARN	100	97.340	ENSANAG00000031516	PARN	100	100.000	Aotus_nancymaae
ENSCSAG00000008142	PARN	92	74.199	ENSACLG00000004742	parn	85	74.199	Astatotilapia_calliptera
ENSCSAG00000008142	PARN	90	74.609	ENSAMXG00000012390	parn	92	72.696	Astyanax_mexicanus
ENSCSAG00000008142	PARN	100	91.236	ENSBTAG00000018097	PARN	100	93.772	Bos_taurus
ENSCSAG00000008142	PARN	100	98.122	ENSCJAG00000015866	PARN	100	100.000	Callithrix_jacchus
ENSCSAG00000008142	PARN	100	93.114	ENSCAFG00000018795	PARN	100	93.114	Canis_familiaris
ENSCSAG00000008142	PARN	100	93.114	ENSCAFG00020024126	PARN	100	93.114	Canis_lupus_dingo
ENSCSAG00000008142	PARN	100	94.210	ENSCHIG00000018143	PARN	100	94.210	Capra_hircus
ENSCSAG00000008142	PARN	73	64.033	ENSCAPG00000007984	PARN	78	64.033	Cavia_aperea
ENSCSAG00000008142	PARN	100	91.080	ENSCPOG00000002263	PARN	100	91.080	Cavia_porcellus
ENSCSAG00000008142	PARN	100	98.279	ENSCCAG00000030367	PARN	100	100.000	Cebus_capucinus
ENSCSAG00000008142	PARN	52	35.862	ENSCATG00000033196	PNLDC1	70	35.862	Cercocebus_atys
ENSCSAG00000008142	PARN	90	100.000	ENSCATG00000041368	PARN	100	100.000	Cercocebus_atys
ENSCSAG00000008142	PARN	100	90.767	ENSCLAG00000015406	PARN	99	90.767	Chinchilla_lanigera
ENSCSAG00000008142	PARN	99	76.899	ENSCHOG00000007014	PARN	100	76.899	Choloepus_hoffmanni
ENSCSAG00000008142	PARN	88	85.561	ENSCPBG00000006609	PARN	97	85.847	Chrysemys_picta_bellii
ENSCSAG00000008142	PARN	80	44.465	ENSCING00000010142	-	99	44.465	Ciona_intestinalis
ENSCSAG00000008142	PARN	100	86.930	ENSCANG00000028849	-	100	100.000	Colobus_angolensis_palliatus
ENSCSAG00000008142	PARN	100	85.981	ENSCGRG00001012096	Parn	100	85.981	Cricetulus_griseus_chok1gshd
ENSCSAG00000008142	PARN	100	85.981	ENSCGRG00000004939	Parn	100	85.981	Cricetulus_griseus_crigri
ENSCSAG00000008142	PARN	95	69.431	ENSCSEG00000002064	parn	100	64.706	Cynoglossus_semilaevis
ENSCSAG00000008142	PARN	91	73.630	ENSCVAG00000014848	parn	83	73.630	Cyprinodon_variegatus
ENSCSAG00000008142	PARN	100	64.286	ENSDARG00000102634	parn	100	59.259	Danio_rerio
ENSCSAG00000008142	PARN	100	92.801	ENSDNOG00000000833	PARN	100	93.427	Dasypus_novemcinctus
ENSCSAG00000008142	PARN	74	94.677	ENSETEG00000014828	-	78	94.677	Echinops_telfairi
ENSCSAG00000008142	PARN	100	93.427	ENSEASG00005011400	PARN	100	93.427	Equus_asinus_asinus
ENSCSAG00000008142	PARN	100	93.271	ENSECAG00000017792	PARN	100	93.271	Equus_caballus
ENSCSAG00000008142	PARN	86	84.615	ENSEEUG00000010370	PARN	86	84.615	Erinaceus_europaeus
ENSCSAG00000008142	PARN	91	72.175	ENSELUG00000013139	parn	77	72.175	Esox_lucius
ENSCSAG00000008142	PARN	100	93.740	ENSFCAG00000044961	PARN	100	96.610	Felis_catus
ENSCSAG00000008142	PARN	99	83.861	ENSFALG00000003911	PARN	98	83.861	Ficedula_albicollis
ENSCSAG00000008142	PARN	100	90.454	ENSFDAG00000009234	PARN	100	90.454	Fukomys_damarensis
ENSCSAG00000008142	PARN	92	66.722	ENSFHEG00000013738	parn	92	77.966	Fundulus_heteroclitus
ENSCSAG00000008142	PARN	83	76.866	ENSGMOG00000003231	parn	97	76.866	Gadus_morhua
ENSCSAG00000008142	PARN	100	82.737	ENSGALG00000003091	PARN	100	82.737	Gallus_gallus
ENSCSAG00000008142	PARN	90	73.379	ENSGAFG00000011061	parn	84	73.154	Gambusia_affinis
ENSCSAG00000008142	PARN	100	68.527	ENSGACG00000019501	parn	100	68.673	Gasterosteus_aculeatus
ENSCSAG00000008142	PARN	51	79.448	ENSGAGG00000023281	PARN	83	79.448	Gopherus_agassizii
ENSCSAG00000008142	PARN	97	98.712	ENSGGOG00000025224	PARN	100	100.000	Gorilla_gorilla
ENSCSAG00000008142	PARN	92	74.199	ENSHBUG00000017906	parn	90	77.654	Haplochromis_burtoni
ENSCSAG00000008142	PARN	100	90.767	ENSHGLG00000010886	PARN	100	90.767	Heterocephalus_glaber_female
ENSCSAG00000008142	PARN	100	90.767	ENSHGLG00100014659	PARN	100	90.767	Heterocephalus_glaber_male
ENSCSAG00000008142	PARN	82	74.102	ENSHCOG00000008683	parn	91	74.102	Hippocampus_comes
ENSCSAG00000008142	PARN	90	63.415	ENSIPUG00000012401	parn	84	63.415	Ictalurus_punctatus
ENSCSAG00000008142	PARN	100	91.862	ENSSTOG00000007519	PARN	100	91.862	Ictidomys_tridecemlineatus
ENSCSAG00000008142	PARN	100	88.576	ENSJJAG00000023049	Parn	100	88.576	Jaculus_jaculus
ENSCSAG00000008142	PARN	95	71.987	ENSKMAG00000009462	parn	84	73.891	Kryptolebias_marmoratus
ENSCSAG00000008142	PARN	91	73.005	ENSLBEG00000009167	parn	90	72.835	Labrus_bergylta
ENSCSAG00000008142	PARN	79	78.770	ENSLACG00000004207	PARN	100	77.594	Latimeria_chalumnae
ENSCSAG00000008142	PARN	97	72.019	ENSLOCG00000000715	parn	87	73.762	Lepisosteus_oculatus
ENSCSAG00000008142	PARN	100	93.271	ENSLAFG00000015036	PARN	100	93.271	Loxodonta_africana
ENSCSAG00000008142	PARN	100	93.906	ENSMFAG00000044852	PARN	100	100.000	Macaca_fascicularis
ENSCSAG00000008142	PARN	100	99.687	ENSMMUG00000018849	PARN	100	100.000	Macaca_mulatta
ENSCSAG00000008142	PARN	100	99.844	ENSMNEG00000045108	PARN	100	100.000	Macaca_nemestrina
ENSCSAG00000008142	PARN	100	99.687	ENSMLEG00000031743	PARN	100	100.000	Mandrillus_leucophaeus
ENSCSAG00000008142	PARN	92	72.697	ENSMAMG00000006939	parn	84	72.697	Mastacembelus_armatus
ENSCSAG00000008142	PARN	92	74.199	ENSMZEG00005013590	parn	90	77.425	Maylandia_zebra
ENSCSAG00000008142	PARN	95	82.871	ENSMGAG00000001004	PARN	95	82.871	Meleagris_gallopavo
ENSCSAG00000008142	PARN	100	80.710	ENSMAUG00000008025	Parn	100	80.710	Mesocricetus_auratus
ENSCSAG00000008142	PARN	100	96.088	ENSMICG00000016053	PARN	100	98.305	Microcebus_murinus
ENSCSAG00000008142	PARN	77	91.296	ENSMOCG00000022211	Parn	100	91.296	Microtus_ochrogaster
ENSCSAG00000008142	PARN	83	76.822	ENSMMOG00000011333	parn	87	76.822	Mola_mola
ENSCSAG00000008142	PARN	77	94.355	ENSMODG00000004915	PARN	99	94.355	Monodelphis_domestica
ENSCSAG00000008142	PARN	83	79.143	ENSMALG00000019426	parn	91	79.143	Monopterus_albus
ENSCSAG00000008142	PARN	100	86.698	MGP_CAROLIEiJ_G0020466	Parn	100	86.698	Mus_caroli
ENSCSAG00000008142	PARN	100	86.698	ENSMUSG00000022685	Parn	100	92.683	Mus_musculus
ENSCSAG00000008142	PARN	100	86.385	MGP_PahariEiJ_G0016172	Parn	100	86.385	Mus_pahari
ENSCSAG00000008142	PARN	100	86.698	MGP_SPRETEiJ_G0021361	Parn	100	86.698	Mus_spretus
ENSCSAG00000008142	PARN	100	93.427	ENSMPUG00000014464	PARN	100	93.427	Mustela_putorius_furo
ENSCSAG00000008142	PARN	77	94.534	ENSMLUG00000005414	PARN	100	94.534	Myotis_lucifugus
ENSCSAG00000008142	PARN	83	77.154	ENSNBRG00000006805	parn	90	77.154	Neolamprologus_brichardi
ENSCSAG00000008142	PARN	100	98.905	ENSNLEG00000010241	PARN	100	100.000	Nomascus_leucogenys
ENSCSAG00000008142	PARN	99	60.918	ENSMEUG00000008178	-	100	60.918	Notamacropus_eugenii
ENSCSAG00000008142	PARN	99	86.551	ENSOPRG00000012187	PARN	100	86.551	Ochotona_princeps
ENSCSAG00000008142	PARN	100	81.931	ENSODEG00000001617	PARN	100	81.931	Octodon_degus
ENSCSAG00000008142	PARN	100	69.846	ENSONIG00000000151	parn	100	69.846	Oreochromis_niloticus
ENSCSAG00000008142	PARN	59	81.890	ENSOANG00000020155	-	97	82.415	Ornithorhynchus_anatinus
ENSCSAG00000008142	PARN	99	91.667	ENSOCUG00000000322	PARN	100	91.667	Oryctolagus_cuniculus
ENSCSAG00000008142	PARN	95	71.311	ENSORLG00020010313	parn	88	71.311	Oryzias_latipes_hni
ENSCSAG00000008142	PARN	95	71.148	ENSORLG00015000300	parn	88	71.148	Oryzias_latipes_hsok
ENSCSAG00000008142	PARN	92	73.051	ENSOMEG00000019555	parn	97	67.421	Oryzias_melastigma
ENSCSAG00000008142	PARN	77	94.747	ENSOGAG00000014626	PARN	100	94.747	Otolemur_garnettii
ENSCSAG00000008142	PARN	77	97.976	ENSOARG00000007574	PARN	100	97.976	Ovis_aries
ENSCSAG00000008142	PARN	100	98.592	ENSPPAG00000031438	PARN	100	100.000	Pan_paniscus
ENSCSAG00000008142	PARN	100	93.584	ENSPPRG00000018583	PARN	100	96.610	Panthera_pardus
ENSCSAG00000008142	PARN	100	93.740	ENSPTIG00000012135	PARN	100	96.610	Panthera_tigris_altaica
ENSCSAG00000008142	PARN	100	98.592	ENSPTRG00000007792	PARN	100	100.000	Pan_troglodytes
ENSCSAG00000008142	PARN	100	96.401	ENSPANG00000020099	PARN	100	100.000	Papio_anubis
ENSCSAG00000008142	PARN	91	74.914	ENSPKIG00000022807	parn	91	70.408	Paramormyrops_kingsleyae
ENSCSAG00000008142	PARN	99	83.810	ENSPSIG00000014804	PARN	100	83.391	Pelodiscus_sinensis
ENSCSAG00000008142	PARN	80	77.043	ENSPMGG00000014431	parn	75	75.046	Periophthalmus_magnuspinnatus
ENSCSAG00000008142	PARN	100	83.725	ENSPEMG00000018439	Parn	100	83.725	Peromyscus_maniculatus_bairdii
ENSCSAG00000008142	PARN	81	67.500	ENSPMAG00000003956	parn	99	67.500	Petromyzon_marinus
ENSCSAG00000008142	PARN	66	86.998	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
ENSCSAG00000008142	PARN	83	77.799	ENSPFOG00000012823	parn	84	72.727	Poecilia_formosa
ENSCSAG00000008142	PARN	83	77.985	ENSPLAG00000006395	parn	84	72.896	Poecilia_latipinna
ENSCSAG00000008142	PARN	83	77.985	ENSPMEG00000007711	parn	84	73.064	Poecilia_mexicana
ENSCSAG00000008142	PARN	83	77.612	ENSPREG00000000147	parn	84	72.727	Poecilia_reticulata
ENSCSAG00000008142	PARN	100	98.596	ENSPPYG00000007123	PARN	100	98.596	Pongo_abelii
ENSCSAG00000008142	PARN	95	82.508	ENSPCAG00000001741	PARN	100	83.333	Procavia_capensis
ENSCSAG00000008142	PARN	100	93.271	ENSPCOG00000019292	PARN	100	98.305	Propithecus_coquereli
ENSCSAG00000008142	PARN	99	89.715	ENSPVAG00000002547	PARN	100	89.715	Pteropus_vampyrus
ENSCSAG00000008142	PARN	92	74.199	ENSPNYG00000006835	parn	90	74.674	Pundamilia_nyererei
ENSCSAG00000008142	PARN	84	73.743	ENSPNAG00000018905	parn	86	73.743	Pygocentrus_nattereri
ENSCSAG00000008142	PARN	100	84.018	ENSRNOG00000002912	Parn	98	88.889	Rattus_norvegicus
ENSCSAG00000008142	PARN	52	99.399	ENSRBIG00000018726	PARN	100	99.399	Rhinopithecus_bieti
ENSCSAG00000008142	PARN	52	99.399	ENSRROG00000011162	-	100	99.399	Rhinopithecus_roxellana
ENSCSAG00000008142	PARN	100	96.557	ENSSBOG00000034726	PARN	100	100.000	Saimiri_boliviensis_boliviensis
ENSCSAG00000008142	PARN	65	93.301	ENSSHAG00000008493	PARN	94	93.301	Sarcophilus_harrisii
ENSCSAG00000008142	PARN	96	72.683	ENSSFOG00015014165	parn	94	73.208	Scleropages_formosus
ENSCSAG00000008142	PARN	95	69.839	ENSSMAG00000000685	parn	87	71.956	Scophthalmus_maximus
ENSCSAG00000008142	PARN	95	71.452	ENSSDUG00000014555	parn	83	73.720	Seriola_dumerili
ENSCSAG00000008142	PARN	91	80.862	ENSSARG00000014339	PARN	100	80.862	Sorex_araneus
ENSCSAG00000008142	PARN	100	85.133	ENSSPUG00000007719	PARN	100	85.133	Sphenodon_punctatus
ENSCSAG00000008142	PARN	91	74.957	ENSSPAG00000007095	parn	86	75.094	Stegastes_partitus
ENSCSAG00000008142	PARN	100	92.801	ENSSSCG00000007878	PARN	89	92.801	Sus_scrofa
ENSCSAG00000008142	PARN	99	83.596	ENSTGUG00000004971	PARN	99	83.596	Taeniopygia_guttata
ENSCSAG00000008142	PARN	55	30.641	ENSTGUG00000011418	PNLDC1	68	30.641	Taeniopygia_guttata
ENSCSAG00000008142	PARN	100	69.243	ENSTNIG00000008252	parn	100	69.397	Tetraodon_nigroviridis
ENSCSAG00000008142	PARN	91	79.655	ENSTBEG00000010407	PARN	100	79.655	Tupaia_belangeri
ENSCSAG00000008142	PARN	99	89.241	ENSTTRG00000002843	PARN	100	89.241	Tursiops_truncatus
ENSCSAG00000008142	PARN	68	83.945	ENSUAMG00000008283	PARN	90	83.945	Ursus_americanus
ENSCSAG00000008142	PARN	100	93.427	ENSUMAG00000004527	PARN	100	93.427	Ursus_maritimus
ENSCSAG00000008142	PARN	96	90.391	ENSVPAG00000008968	PARN	100	90.391	Vicugna_pacos
ENSCSAG00000008142	PARN	100	93.584	ENSVVUG00000019509	PARN	100	93.584	Vulpes_vulpes
ENSCSAG00000008142	PARN	100	74.571	ENSXETG00000010994	parn	100	83.080	Xenopus_tropicalis
ENSCSAG00000008142	PARN	90	69.535	ENSXCOG00000015990	parn	96	69.374	Xiphophorus_couchianus
ENSCSAG00000008142	PARN	92	73.401	ENSXMAG00000014783	parn	84	73.401	Xiphophorus_maculatus