EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000008502 (Gene tree)
Gene ID: 103237623
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 14237 bases
Position: chr8:138602835-138617071
Accession: 103237623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000004761	CPSF_A	PF03178.15	4.5e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000006559	CPSF1-201	4520	XM_008001921	ENSCSAP00000004761	1442 (aa)	XP_008000112	A0A0D9R822

Gene Model

Click here to download ENSCSAG00000008502's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000008502's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000008502	CPSF1	100	99.099	ENSG00000071894	CPSF1	100	99.099	Homo_sapiens
ENSCSAG00000008502	CPSF1	100	78.041	ENSAPOG00000019621	cpsf1	100	78.243	Acanthochromis_polyacanthus
ENSCSAG00000008502	CPSF1	97	94.782	ENSAMEG00000005557	CPSF1	100	94.782	Ailuropoda_melanoleuca
ENSCSAG00000008502	CPSF1	100	78.131	ENSACIG00000006112	cpsf1	100	78.339	Amphilophus_citrinellus
ENSCSAG00000008502	CPSF1	100	79.379	ENSAOCG00000007120	cpsf1	100	79.586	Amphiprion_ocellaris
ENSCSAG00000008502	CPSF1	100	79.738	ENSAPEG00000005755	cpsf1	100	79.876	Amphiprion_percula
ENSCSAG00000008502	CPSF1	100	77.815	ENSATEG00000011097	cpsf1	100	78.287	Anabas_testudineus
ENSCSAG00000008502	CPSF1	93	81.622	ENSACAG00000009655	CPSF1	100	81.622	Anolis_carolinensis
ENSCSAG00000008502	CPSF1	100	98.752	ENSANAG00000036514	CPSF1	100	98.752	Aotus_nancymaae
ENSCSAG00000008502	CPSF1	100	77.232	ENSACLG00000012231	cpsf1	99	78.903	Astatotilapia_calliptera
ENSCSAG00000008502	CPSF1	100	74.015	ENSAMXG00000008485	cpsf1	100	74.084	Astyanax_mexicanus
ENSCSAG00000008502	CPSF1	100	94.490	ENSBTAG00000008355	CPSF1	100	94.816	Bos_taurus
ENSCSAG00000008502	CPSF1	100	32.131	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSCSAG00000008502	CPSF1	100	98.752	ENSCJAG00000021421	CPSF1	100	98.752	Callithrix_jacchus
ENSCSAG00000008502	CPSF1	97	95.997	ENSCAFG00000001600	CPSF1	100	96.300	Canis_familiaris
ENSCSAG00000008502	CPSF1	100	96.194	ENSCAFG00020020821	CPSF1	100	96.194	Canis_lupus_dingo
ENSCSAG00000008502	CPSF1	100	90.852	ENSCHIG00000015833	CPSF1	100	90.852	Capra_hircus
ENSCSAG00000008502	CPSF1	100	97.850	ENSTSYG00000028560	CPSF1	100	97.850	Carlito_syrichta
ENSCSAG00000008502	CPSF1	97	95.197	ENSCAPG00000014921	CPSF1	99	95.197	Cavia_aperea
ENSCSAG00000008502	CPSF1	100	94.941	ENSCPOG00000011448	CPSF1	100	94.941	Cavia_porcellus
ENSCSAG00000008502	CPSF1	100	98.890	ENSCCAG00000037658	CPSF1	100	98.890	Cebus_capucinus
ENSCSAG00000008502	CPSF1	100	99.653	ENSCATG00000037234	CPSF1	100	99.653	Cercocebus_atys
ENSCSAG00000008502	CPSF1	100	96.671	ENSCLAG00000012166	CPSF1	100	96.671	Chinchilla_lanigera
ENSCSAG00000008502	CPSF1	99	87.334	ENSCPBG00000018910	CPSF1	96	87.334	Chrysemys_picta_bellii
ENSCSAG00000008502	CPSF1	96	48.494	ENSCING00000000514	-	100	48.422	Ciona_intestinalis
ENSCSAG00000008502	CPSF1	99	47.835	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSCSAG00000008502	CPSF1	99	94.052	ENSCANG00000032760	CPSF1	99	94.052	Colobus_angolensis_palliatus
ENSCSAG00000008502	CPSF1	100	96.463	ENSCGRG00001016344	Cpsf1	100	96.463	Cricetulus_griseus_chok1gshd
ENSCSAG00000008502	CPSF1	100	94.383	ENSCGRG00000003118	Cpsf1	100	94.383	Cricetulus_griseus_crigri
ENSCSAG00000008502	CPSF1	100	77.509	ENSCSEG00000013464	cpsf1	100	77.578	Cynoglossus_semilaevis
ENSCSAG00000008502	CPSF1	85	76.801	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSCSAG00000008502	CPSF1	100	79.890	ENSDARG00000034178	cpsf1	100	79.959	Danio_rerio
ENSCSAG00000008502	CPSF1	68	96.232	ENSDNOG00000043654	CPSF1	94	96.232	Dasypus_novemcinctus
ENSCSAG00000008502	CPSF1	97	95.914	ENSDORG00000006278	Cpsf1	99	95.914	Dipodomys_ordii
ENSCSAG00000008502	CPSF1	100	45.473	FBgn0024698	Cpsf160	100	45.393	Drosophila_melanogaster
ENSCSAG00000008502	CPSF1	80	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSCSAG00000008502	CPSF1	100	96.955	ENSEASG00005010774	CPSF1	100	96.955	Equus_asinus_asinus
ENSCSAG00000008502	CPSF1	100	96.955	ENSECAG00000022209	CPSF1	100	96.955	Equus_caballus
ENSCSAG00000008502	CPSF1	100	94.602	ENSEEUG00000000471	CPSF1	100	94.602	Erinaceus_europaeus
ENSCSAG00000008502	CPSF1	100	78.082	ENSELUG00000012271	cpsf1	100	78.630	Esox_lucius
ENSCSAG00000008502	CPSF1	100	96.671	ENSFDAG00000016060	CPSF1	100	96.671	Fukomys_damarensis
ENSCSAG00000008502	CPSF1	100	76.860	ENSFHEG00000016801	cpsf1	100	76.928	Fundulus_heteroclitus
ENSCSAG00000008502	CPSF1	100	77.839	ENSGMOG00000000796	cpsf1	100	78.153	Gadus_morhua
ENSCSAG00000008502	CPSF1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSCSAG00000008502	CPSF1	100	78.611	ENSGACG00000008703	cpsf1	100	78.680	Gasterosteus_aculeatus
ENSCSAG00000008502	CPSF1	100	83.610	ENSGAGG00000004276	CPSF1	98	87.332	Gopherus_agassizii
ENSCSAG00000008502	CPSF1	100	99.237	ENSGGOG00000016185	CPSF1	100	99.237	Gorilla_gorilla
ENSCSAG00000008502	CPSF1	100	79.585	ENSHBUG00000018900	cpsf1	100	79.723	Haplochromis_burtoni
ENSCSAG00000008502	CPSF1	100	96.533	ENSHGLG00000016139	CPSF1	100	96.533	Heterocephalus_glaber_female
ENSCSAG00000008502	CPSF1	100	96.463	ENSHGLG00100009750	CPSF1	100	96.463	Heterocephalus_glaber_male
ENSCSAG00000008502	CPSF1	100	76.934	ENSHCOG00000018509	cpsf1	100	76.866	Hippocampus_comes
ENSCSAG00000008502	CPSF1	100	76.632	ENSIPUG00000011259	cpsf1	100	76.632	Ictalurus_punctatus
ENSCSAG00000008502	CPSF1	97	96.571	ENSSTOG00000009957	CPSF1	99	96.571	Ictidomys_tridecemlineatus
ENSCSAG00000008502	CPSF1	100	96.325	ENSJJAG00000023002	Cpsf1	100	96.325	Jaculus_jaculus
ENSCSAG00000008502	CPSF1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSCSAG00000008502	CPSF1	100	77.251	ENSLBEG00000003601	cpsf1	100	77.755	Labrus_bergylta
ENSCSAG00000008502	CPSF1	88	81.250	ENSLACG00000000233	CPSF1	92	81.250	Latimeria_chalumnae
ENSCSAG00000008502	CPSF1	100	78.054	ENSLOCG00000008484	cpsf1	100	78.330	Lepisosteus_oculatus
ENSCSAG00000008502	CPSF1	97	95.207	ENSLAFG00000022601	CPSF1	100	95.207	Loxodonta_africana
ENSCSAG00000008502	CPSF1	100	99.653	ENSMFAG00000037013	CPSF1	100	99.653	Macaca_fascicularis
ENSCSAG00000008502	CPSF1	100	99.723	ENSMMUG00000007380	CPSF1	100	99.723	Macaca_mulatta
ENSCSAG00000008502	CPSF1	97	99.641	ENSMNEG00000043564	CPSF1	100	99.641	Macaca_nemestrina
ENSCSAG00000008502	CPSF1	100	99.723	ENSMLEG00000043010	CPSF1	100	99.723	Mandrillus_leucophaeus
ENSCSAG00000008502	CPSF1	100	78.378	ENSMAMG00000003803	cpsf1	100	78.514	Mastacembelus_armatus
ENSCSAG00000008502	CPSF1	100	77.370	ENSMZEG00005001168	cpsf1	100	77.509	Maylandia_zebra
ENSCSAG00000008502	CPSF1	100	96.325	ENSMAUG00000003601	Cpsf1	100	96.325	Mesocricetus_auratus
ENSCSAG00000008502	CPSF1	100	97.365	ENSMICG00000015767	CPSF1	100	97.365	Microcebus_murinus
ENSCSAG00000008502	CPSF1	100	96.602	ENSMOCG00000022758	Cpsf1	100	96.602	Microtus_ochrogaster
ENSCSAG00000008502	CPSF1	100	78.907	ENSMMOG00000021245	cpsf1	100	79.184	Mola_mola
ENSCSAG00000008502	CPSF1	100	92.897	ENSMODG00000010755	CPSF1	100	92.897	Monodelphis_domestica
ENSCSAG00000008502	CPSF1	100	77.605	ENSMALG00000020545	cpsf1	100	77.808	Monopterus_albus
ENSCSAG00000008502	CPSF1	100	96.602	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.602	Mus_caroli
ENSCSAG00000008502	CPSF1	100	96.533	ENSMUSG00000034022	Cpsf1	100	96.533	Mus_musculus
ENSCSAG00000008502	CPSF1	100	96.533	MGP_PahariEiJ_G0019946	Cpsf1	100	96.533	Mus_pahari
ENSCSAG00000008502	CPSF1	100	96.533	MGP_SPRETEiJ_G0020839	Cpsf1	100	96.533	Mus_spretus
ENSCSAG00000008502	CPSF1	94	95.556	ENSMPUG00000006419	CPSF1	93	95.556	Mustela_putorius_furo
ENSCSAG00000008502	CPSF1	100	96.255	ENSNGAG00000022460	Cpsf1	100	96.255	Nannospalax_galili
ENSCSAG00000008502	CPSF1	100	75.035	ENSNBRG00000000813	cpsf1	100	75.035	Neolamprologus_brichardi
ENSCSAG00000008502	CPSF1	86	87.303	ENSNLEG00000010633	-	100	90.278	Nomascus_leucogenys
ENSCSAG00000008502	CPSF1	82	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSCSAG00000008502	CPSF1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSCSAG00000008502	CPSF1	100	96.741	ENSODEG00000013995	CPSF1	100	96.741	Octodon_degus
ENSCSAG00000008502	CPSF1	100	79.862	ENSONIG00000007676	cpsf1	100	80.000	Oreochromis_niloticus
ENSCSAG00000008502	CPSF1	58	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSCSAG00000008502	CPSF1	100	77.378	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSCSAG00000008502	CPSF1	100	77.446	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSCSAG00000008502	CPSF1	100	77.362	ENSORLG00015009979	cpsf1	100	77.362	Oryzias_latipes_hsok
ENSCSAG00000008502	CPSF1	100	77.106	ENSOMEG00000011849	cpsf1	100	77.672	Oryzias_melastigma
ENSCSAG00000008502	CPSF1	100	97.434	ENSOGAG00000000315	CPSF1	100	97.434	Otolemur_garnettii
ENSCSAG00000008502	CPSF1	100	99.307	ENSPPAG00000019280	CPSF1	100	99.307	Pan_paniscus
ENSCSAG00000008502	CPSF1	100	97.614	ENSPTRG00000051253	-	100	97.614	Pan_troglodytes
ENSCSAG00000008502	CPSF1	100	99.307	ENSPTRG00000049288	-	100	99.307	Pan_troglodytes
ENSCSAG00000008502	CPSF1	97	99.641	ENSPANG00000015005	CPSF1	100	99.641	Papio_anubis
ENSCSAG00000008502	CPSF1	100	80.705	ENSPKIG00000002582	cpsf1	100	81.350	Paramormyrops_kingsleyae
ENSCSAG00000008502	CPSF1	100	92.828	ENSPCIG00000009035	CPSF1	100	92.828	Phascolarctos_cinereus
ENSCSAG00000008502	CPSF1	100	76.319	ENSPFOG00000012870	cpsf1	100	76.658	Poecilia_formosa
ENSCSAG00000008502	CPSF1	100	76.133	ENSPREG00000016307	cpsf1	100	76.335	Poecilia_reticulata
ENSCSAG00000008502	CPSF1	100	90.985	ENSPPYG00000018973	CPSF1	100	90.985	Pongo_abelii
ENSCSAG00000008502	CPSF1	91	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSCSAG00000008502	CPSF1	100	93.624	ENSPCOG00000020001	CPSF1	100	93.624	Propithecus_coquereli
ENSCSAG00000008502	CPSF1	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSCSAG00000008502	CPSF1	100	78.552	ENSPNYG00000004906	cpsf1	100	78.689	Pundamilia_nyererei
ENSCSAG00000008502	CPSF1	100	75.276	ENSPNAG00000024395	cpsf1	100	75.276	Pygocentrus_nattereri
ENSCSAG00000008502	CPSF1	100	96.602	ENSRNOG00000030705	Cpsf1	100	96.602	Rattus_norvegicus
ENSCSAG00000008502	CPSF1	100	99.653	ENSRBIG00000044907	CPSF1	100	99.653	Rhinopithecus_bieti
ENSCSAG00000008502	CPSF1	100	99.584	ENSRROG00000044861	CPSF1	100	99.584	Rhinopithecus_roxellana
ENSCSAG00000008502	CPSF1	97	98.780	ENSSBOG00000027177	CPSF1	100	98.780	Saimiri_boliviensis_boliviensis
ENSCSAG00000008502	CPSF1	100	92.552	ENSSHAG00000006500	CPSF1	100	92.552	Sarcophilus_harrisii
ENSCSAG00000008502	CPSF1	100	78.237	ENSSFOG00015004606	cpsf1	100	81.309	Scleropages_formosus
ENSCSAG00000008502	CPSF1	100	77.673	ENSSMAG00000020547	cpsf1	100	77.876	Scophthalmus_maximus
ENSCSAG00000008502	CPSF1	100	79.129	ENSSDUG00000001100	cpsf1	100	79.406	Seriola_dumerili
ENSCSAG00000008502	CPSF1	100	79.322	ENSSLDG00000003619	cpsf1	100	79.461	Seriola_lalandi_dorsalis
ENSCSAG00000008502	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSCSAG00000008502	CPSF1	96	87.455	ENSSPUG00000014396	CPSF1	100	87.455	Sphenodon_punctatus
ENSCSAG00000008502	CPSF1	100	78.093	ENSSPAG00000005349	cpsf1	100	78.431	Stegastes_partitus
ENSCSAG00000008502	CPSF1	100	95.779	ENSSSCG00000005906	CPSF1	100	95.779	Sus_scrofa
ENSCSAG00000008502	CPSF1	96	77.832	ENSTRUG00000013134	cpsf1	99	77.832	Takifugu_rubripes
ENSCSAG00000008502	CPSF1	100	78.694	ENSTNIG00000014027	cpsf1	100	78.763	Tetraodon_nigroviridis
ENSCSAG00000008502	CPSF1	77	89.138	ENSTBEG00000001756	CPSF1	91	89.138	Tupaia_belangeri
ENSCSAG00000008502	CPSF1	90	96.546	ENSTTRG00000001937	CPSF1	90	96.546	Tursiops_truncatus
ENSCSAG00000008502	CPSF1	97	96.569	ENSUAMG00000006476	CPSF1	98	96.569	Ursus_americanus
ENSCSAG00000008502	CPSF1	100	77.455	ENSXCOG00000003608	cpsf1	100	77.593	Xiphophorus_couchianus
ENSCSAG00000008502	CPSF1	100	76.934	ENSXMAG00000005798	cpsf1	100	77.210	Xiphophorus_maculatus