EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000011265 (Gene tree)
Gene ID: 103241558
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 131326 bases
Position: chr15:48174316-48305641
Accession: 103241558
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000007472	XRN_N	PF03159.18	2.6e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000009350	XRN1-201	5210	XM_008008859	ENSCSAP00000007472	1707 (aa)	XP_008007046	A0A0D9RFT3

Gene Model

Click here to download ENSCSAG00000011265's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03008	Ribosome biogenesis in eukaryotes	KEGG
csab03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000011265's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000011265	XRN1	100	97.540	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSCSAG00000011265	XRN1	95	72.883	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSCSAG00000011265	XRN1	100	91.304	ENSAMEG00000012538	XRN1	100	91.304	Ailuropoda_melanoleuca
ENSCSAG00000011265	XRN1	95	72.498	ENSACIG00000001057	xrn1	94	72.661	Amphilophus_citrinellus
ENSCSAG00000011265	XRN1	100	60.668	ENSAOCG00000014097	xrn1	95	69.679	Amphiprion_ocellaris
ENSCSAG00000011265	XRN1	100	60.269	ENSAPEG00000006620	xrn1	98	62.470	Amphiprion_percula
ENSCSAG00000011265	XRN1	94	71.360	ENSATEG00000009752	xrn1	97	71.429	Anabas_testudineus
ENSCSAG00000011265	XRN1	99	75.735	ENSAPLG00000004905	XRN1	100	75.735	Anas_platyrhynchos
ENSCSAG00000011265	XRN1	100	72.163	ENSACAG00000004985	XRN1	100	72.163	Anolis_carolinensis
ENSCSAG00000011265	XRN1	100	96.778	ENSANAG00000029013	XRN1	100	96.778	Aotus_nancymaae
ENSCSAG00000011265	XRN1	100	60.158	ENSACLG00000004806	xrn1	96	61.683	Astatotilapia_calliptera
ENSCSAG00000011265	XRN1	99	60.308	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCSAG00000011265	XRN1	100	92.443	ENSBTAG00000011524	XRN1	100	92.267	Bos_taurus
ENSCSAG00000011265	XRN1	70	38.935	WBGene00012730	xrn-1	80	39.180	Caenorhabditis_elegans
ENSCSAG00000011265	XRN1	100	96.719	ENSCJAG00000001872	XRN1	100	96.719	Callithrix_jacchus
ENSCSAG00000011265	XRN1	100	93.380	ENSCAFG00000007783	XRN1	100	93.380	Canis_familiaris
ENSCSAG00000011265	XRN1	100	91.628	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSCSAG00000011265	XRN1	99	89.782	ENSCHIG00000019192	XRN1	99	89.610	Capra_hircus
ENSCSAG00000011265	XRN1	100	93.677	ENSTSYG00000002705	XRN1	100	93.677	Carlito_syrichta
ENSCSAG00000011265	XRN1	55	76.949	ENSCAPG00000004604	-	99	76.949	Cavia_aperea
ENSCSAG00000011265	XRN1	100	97.305	ENSCCAG00000034800	XRN1	99	99.049	Cebus_capucinus
ENSCSAG00000011265	XRN1	100	99.649	ENSCATG00000041794	XRN1	100	99.649	Cercocebus_atys
ENSCSAG00000011265	XRN1	100	87.171	ENSCLAG00000001451	XRN1	99	96.513	Chinchilla_lanigera
ENSCSAG00000011265	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSCSAG00000011265	XRN1	70	45.327	ENSCSAVG00000008584	-	98	44.739	Ciona_savignyi
ENSCSAG00000011265	XRN1	100	99.238	ENSCANG00000037495	XRN1	100	99.238	Colobus_angolensis_palliatus
ENSCSAG00000011265	XRN1	100	87.328	ENSCGRG00001019411	Xrn1	99	96.513	Cricetulus_griseus_chok1gshd
ENSCSAG00000011265	XRN1	100	87.328	ENSCGRG00000012464	Xrn1	99	96.513	Cricetulus_griseus_crigri
ENSCSAG00000011265	XRN1	95	67.340	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCSAG00000011265	XRN1	66	67.544	ENSCVAG00000013089	xrn1	99	71.958	Cyprinodon_variegatus
ENSCSAG00000011265	XRN1	99	62.621	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCSAG00000011265	XRN1	100	86.782	ENSDORG00000013833	Xrn1	100	86.724	Dipodomys_ordii
ENSCSAG00000011265	XRN1	74	39.891	FBgn0020261	pcm	76	39.799	Drosophila_melanogaster
ENSCSAG00000011265	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCSAG00000011265	XRN1	100	93.146	ENSEASG00005002687	XRN1	99	96.513	Equus_asinus_asinus
ENSCSAG00000011265	XRN1	100	93.146	ENSECAG00000008301	XRN1	100	93.146	Equus_caballus
ENSCSAG00000011265	XRN1	92	83.480	ENSEEUG00000011323	XRN1	92	83.480	Erinaceus_europaeus
ENSCSAG00000011265	XRN1	100	61.356	ENSELUG00000000169	xrn1	94	63.196	Esox_lucius
ENSCSAG00000011265	XRN1	100	89.754	ENSFCAG00000027589	XRN1	99	96.264	Felis_catus
ENSCSAG00000011265	XRN1	100	74.359	ENSFALG00000007021	XRN1	100	74.415	Ficedula_albicollis
ENSCSAG00000011265	XRN1	100	88.431	ENSFDAG00000020494	XRN1	99	96.038	Fukomys_damarensis
ENSCSAG00000011265	XRN1	84	68.368	ENSGMOG00000006396	xrn1	79	68.368	Gadus_morhua
ENSCSAG00000011265	XRN1	100	74.637	ENSGALG00000002706	XRN1	100	74.637	Gallus_gallus
ENSCSAG00000011265	XRN1	100	59.648	ENSGACG00000014328	xrn1	96	61.319	Gasterosteus_aculeatus
ENSCSAG00000011265	XRN1	95	77.751	ENSGAGG00000017535	XRN1	99	77.751	Gopherus_agassizii
ENSCSAG00000011265	XRN1	100	97.774	ENSGGOG00000008047	XRN1	100	97.774	Gorilla_gorilla
ENSCSAG00000011265	XRN1	100	60.161	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSCSAG00000011265	XRN1	100	89.697	ENSHGLG00000014476	XRN1	99	96.989	Heterocephalus_glaber_female
ENSCSAG00000011265	XRN1	100	89.697	ENSHGLG00100015130	XRN1	99	96.989	Heterocephalus_glaber_male
ENSCSAG00000011265	XRN1	97	70.102	ENSHCOG00000014062	xrn1	96	70.253	Hippocampus_comes
ENSCSAG00000011265	XRN1	99	62.279	ENSIPUG00000015229	xrn1	96	64.286	Ictalurus_punctatus
ENSCSAG00000011265	XRN1	100	91.232	ENSSTOG00000013552	XRN1	99	97.781	Ictidomys_tridecemlineatus
ENSCSAG00000011265	XRN1	98	86.636	ENSJJAG00000010863	Xrn1	99	94.355	Jaculus_jaculus
ENSCSAG00000011265	XRN1	94	60.872	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSCSAG00000011265	XRN1	100	59.741	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCSAG00000011265	XRN1	100	69.531	ENSLACG00000009020	XRN1	97	70.609	Latimeria_chalumnae
ENSCSAG00000011265	XRN1	100	65.726	ENSLOCG00000007944	xrn1	98	65.716	Lepisosteus_oculatus
ENSCSAG00000011265	XRN1	63	96.352	ENSLAFG00000015426	XRN1	100	96.352	Loxodonta_africana
ENSCSAG00000011265	XRN1	100	99.649	ENSMFAG00000032599	XRN1	100	99.649	Macaca_fascicularis
ENSCSAG00000011265	XRN1	100	99.707	ENSMMUG00000014038	XRN1	100	99.707	Macaca_mulatta
ENSCSAG00000011265	XRN1	100	99.414	ENSMNEG00000034217	XRN1	100	99.414	Macaca_nemestrina
ENSCSAG00000011265	XRN1	94	71.034	ENSMAMG00000013219	xrn1	94	77.320	Mastacembelus_armatus
ENSCSAG00000011265	XRN1	100	59.864	ENSMZEG00005015099	xrn1	96	61.566	Maylandia_zebra
ENSCSAG00000011265	XRN1	99	74.668	ENSMGAG00000006333	XRN1	100	74.668	Meleagris_gallopavo
ENSCSAG00000011265	XRN1	100	94.506	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCSAG00000011265	XRN1	58	95.404	ENSMOCG00000008665	Xrn1	99	95.404	Microtus_ochrogaster
ENSCSAG00000011265	XRN1	100	82.555	ENSMODG00000021236	XRN1	100	82.264	Monodelphis_domestica
ENSCSAG00000011265	XRN1	100	57.530	ENSMALG00000004098	xrn1	100	57.299	Monopterus_albus
ENSCSAG00000011265	XRN1	96	95.577	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCSAG00000011265	XRN1	100	86.239	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCSAG00000011265	XRN1	100	86.009	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCSAG00000011265	XRN1	100	86.181	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCSAG00000011265	XRN1	100	93.732	ENSMPUG00000012040	XRN1	100	93.732	Mustela_putorius_furo
ENSCSAG00000011265	XRN1	100	89.054	ENSMLUG00000016885	XRN1	100	88.940	Myotis_lucifugus
ENSCSAG00000011265	XRN1	57	91.759	ENSNGAG00000023964	Xrn1	99	92.051	Nannospalax_galili
ENSCSAG00000011265	XRN1	100	98.067	ENSNLEG00000004726	XRN1	100	98.067	Nomascus_leucogenys
ENSCSAG00000011265	XRN1	77	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSCSAG00000011265	XRN1	79	84.800	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSCSAG00000011265	XRN1	100	61.311	ENSONIG00000016673	xrn1	99	64.710	Oreochromis_niloticus
ENSCSAG00000011265	XRN1	92	78.143	ENSOANG00000006735	XRN1	100	78.016	Ornithorhynchus_anatinus
ENSCSAG00000011265	XRN1	100	90.602	ENSOCUG00000001861	XRN1	100	90.430	Oryctolagus_cuniculus
ENSCSAG00000011265	XRN1	100	60.438	ENSORLG00000013005	xrn1	100	60.193	Oryzias_latipes
ENSCSAG00000011265	XRN1	100	60.742	ENSORLG00020005559	xrn1	100	61.508	Oryzias_latipes_hni
ENSCSAG00000011265	XRN1	100	60.745	ENSORLG00015022523	xrn1	96	62.806	Oryzias_latipes_hsok
ENSCSAG00000011265	XRN1	93	72.742	ENSOMEG00000015397	xrn1	99	72.742	Oryzias_melastigma
ENSCSAG00000011265	XRN1	100	91.393	ENSOGAG00000000170	XRN1	100	91.393	Otolemur_garnettii
ENSCSAG00000011265	XRN1	99	92.962	ENSOARG00000006343	XRN1	99	92.786	Ovis_aries
ENSCSAG00000011265	XRN1	100	97.657	ENSPPAG00000010180	XRN1	100	97.657	Pan_paniscus
ENSCSAG00000011265	XRN1	100	93.150	ENSPPRG00000007125	XRN1	100	93.150	Panthera_pardus
ENSCSAG00000011265	XRN1	100	93.208	ENSPTIG00000021081	XRN1	100	93.208	Panthera_tigris_altaica
ENSCSAG00000011265	XRN1	100	97.774	ENSPTRG00000015482	XRN1	100	97.774	Pan_troglodytes
ENSCSAG00000011265	XRN1	100	99.590	ENSPANG00000010638	XRN1	100	99.590	Papio_anubis
ENSCSAG00000011265	XRN1	100	76.531	ENSPSIG00000018050	XRN1	100	76.644	Pelodiscus_sinensis
ENSCSAG00000011265	XRN1	57	77.551	ENSPMGG00000002648	xrn1	98	78.807	Periophthalmus_magnuspinnatus
ENSCSAG00000011265	XRN1	57	96.038	ENSPEMG00000020610	Xrn1	99	96.038	Peromyscus_maniculatus_bairdii
ENSCSAG00000011265	XRN1	65	50.886	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCSAG00000011265	XRN1	100	81.818	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSCSAG00000011265	XRN1	90	64.638	ENSPFOG00000013932	xrn1	99	65.019	Poecilia_formosa
ENSCSAG00000011265	XRN1	90	63.458	ENSPLAG00000021653	xrn1	99	64.295	Poecilia_latipinna
ENSCSAG00000011265	XRN1	88	64.295	ENSPMEG00000003076	xrn1	95	64.809	Poecilia_mexicana
ENSCSAG00000011265	XRN1	100	60.508	ENSPREG00000021147	xrn1	100	59.486	Poecilia_reticulata
ENSCSAG00000011265	XRN1	100	97.891	ENSPPYG00000014172	XRN1	100	97.891	Pongo_abelii
ENSCSAG00000011265	XRN1	90	81.930	ENSPCAG00000005638	XRN1	100	81.930	Procavia_capensis
ENSCSAG00000011265	XRN1	100	95.023	ENSPCOG00000013089	XRN1	99	97.529	Propithecus_coquereli
ENSCSAG00000011265	XRN1	96	92.721	ENSPVAG00000016265	XRN1	96	92.721	Pteropus_vampyrus
ENSCSAG00000011265	XRN1	96	71.282	ENSPNYG00000010570	xrn1	94	71.338	Pundamilia_nyererei
ENSCSAG00000011265	XRN1	99	60.424	ENSPNAG00000023531	xrn1	96	61.796	Pygocentrus_nattereri
ENSCSAG00000011265	XRN1	100	86.927	ENSRNOG00000042951	Xrn1	100	86.812	Rattus_norvegicus
ENSCSAG00000011265	XRN1	100	98.594	ENSRBIG00000041227	XRN1	100	98.594	Rhinopithecus_bieti
ENSCSAG00000011265	XRN1	66	54.496	YGL173C	XRN1	81	34.434	Saccharomyces_cerevisiae
ENSCSAG00000011265	XRN1	100	96.661	ENSSBOG00000029561	XRN1	100	96.661	Saimiri_boliviensis_boliviensis
ENSCSAG00000011265	XRN1	99	81.963	ENSSHAG00000016207	XRN1	100	81.716	Sarcophilus_harrisii
ENSCSAG00000011265	XRN1	100	60.997	ENSSFOG00015024211	xrn1	97	62.768	Scleropages_formosus
ENSCSAG00000011265	XRN1	94	72.617	ENSSMAG00000016534	xrn1	95	72.617	Scophthalmus_maximus
ENSCSAG00000011265	XRN1	90	72.254	ENSSDUG00000010306	xrn1	91	72.101	Seriola_dumerili
ENSCSAG00000011265	XRN1	95	71.815	ENSSLDG00000021543	xrn1	97	71.667	Seriola_lalandi_dorsalis
ENSCSAG00000011265	XRN1	67	85.434	ENSSARG00000007741	-	83	85.434	Sorex_araneus
ENSCSAG00000011265	XRN1	100	77.191	ENSTGUG00000008498	XRN1	100	77.249	Taeniopygia_guttata
ENSCSAG00000011265	XRN1	100	58.565	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSCSAG00000011265	XRN1	96	68.606	ENSTNIG00000017615	xrn1	96	60.000	Tetraodon_nigroviridis
ENSCSAG00000011265	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSCSAG00000011265	XRN1	100	89.162	ENSTTRG00000012914	XRN1	100	88.928	Tursiops_truncatus
ENSCSAG00000011265	XRN1	100	92.857	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSCSAG00000011265	XRN1	100	94.731	ENSUMAG00000013625	XRN1	100	94.731	Ursus_maritimus
ENSCSAG00000011265	XRN1	100	90.861	ENSVPAG00000004690	XRN1	100	90.861	Vicugna_pacos
ENSCSAG00000011265	XRN1	100	94.318	ENSVVUG00000024461	XRN1	99	97.464	Vulpes_vulpes
ENSCSAG00000011265	XRN1	100	69.356	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSCSAG00000011265	XRN1	100	60.845	ENSXCOG00000007917	xrn1	95	62.530	Xiphophorus_couchianus
ENSCSAG00000011265	XRN1	92	71.883	ENSXMAG00000018320	xrn1	92	71.964	Xiphophorus_maculatus