EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAG00000011644 (Gene tree)
Gene ID: 103242561
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 27942 bases
Position: chr16:6860677-6888618
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000007724	RNA_pol_Rpb1_5	PF04998.17	2.7e-64	1	1
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	1	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	2	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	3	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	4	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	5	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	6	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	7	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	8	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	9	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	10	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	11	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	12	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	13	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	14	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	15	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	16	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	17	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	18	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	19	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	20	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	21	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	22	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	23	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	24	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	25	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	26	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	27	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	28	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	29	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	30	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	31	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	32	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	33	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	34	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	35	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	36	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	37	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	38	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	39	40
ENSCSAP00000007724	RNA_pol_Rpb1_R	PF05001.13	2.8e-27	40	40
ENSCSAP00000007724	RNA_pol_Rpb1_4	PF05000.17	3.1e-38	1	1
ENSCSAP00000007724	RNA_pol_Rpb1_2	PF00623.20	9.2e-75	1	1
ENSCSAP00000007724	RNA_pol_Rpb1_3	PF04983.18	8.1e-50	1	1
ENSCSAP00000007724	RNA_pol_Rpb1_1	PF04997.12	3.6e-109	1	1
ENSCSAP00000007724	RNA_pol_Rpb1_6	PF04992.14	1.2e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000009613	-	5916	-	ENSCSAP00000007724	1971 (aa)	-	A0A0D9RGI5

Gene Model

Click here to download ENSCSAG00000011644's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03020	RNA polymerase	KEGG
csab05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000011644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAG00000011644	-	53	30.769	ENSCSAG00000016251	POLR1A	71	30.769
ENSCSAG00000011644	-	55	38.419	ENSCSAG00000009292	POLR3A	77	38.419

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000011644	-	82	85.644	ENSAPOG00000006552	polr2a	91	85.626	Acanthochromis_polyacanthus
ENSCSAG00000011644	-	82	90.394	ENSAMEG00000016265	-	82	90.394	Ailuropoda_melanoleuca
ENSCSAG00000011644	-	82	83.672	ENSACIG00000015982	polr2a	81	83.652	Amphilophus_citrinellus
ENSCSAG00000011644	-	97	83.672	ENSAOCG00000004255	polr2a	96	83.652	Amphiprion_ocellaris
ENSCSAG00000011644	-	82	85.767	ENSAPEG00000012623	polr2a	82	85.750	Amphiprion_percula
ENSCSAG00000011644	-	82	85.582	ENSATEG00000019644	polr2a	82	85.564	Anabas_testudineus
ENSCSAG00000011644	-	82	88.957	ENSACAG00000014561	POLR2A	82	88.957	Anolis_carolinensis
ENSCSAG00000011644	-	82	90.746	ENSANAG00000020093	-	100	90.455	Aotus_nancymaae
ENSCSAG00000011644	-	82	85.459	ENSACLG00000006735	polr2a	82	85.441	Astatotilapia_calliptera
ENSCSAG00000011644	-	82	86.075	ENSAMXG00000020046	polr2a	82	86.058	Astyanax_mexicanus
ENSCSAG00000011644	-	82	90.746	ENSBTAG00000046765	POLR2A	82	90.746	Bos_taurus
ENSCSAG00000011644	-	94	69.186	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSCSAG00000011644	-	85	90.685	ENSCAFG00000016532	POLR2A	100	91.970	Canis_familiaris
ENSCSAG00000011644	-	82	89.581	ENSCAFG00020007929	-	100	89.747	Canis_lupus_dingo
ENSCSAG00000011644	-	82	90.746	ENSCHIG00000027173	-	82	90.746	Capra_hircus
ENSCSAG00000011644	-	90	89.795	ENSTSYG00000012803	-	100	90.455	Carlito_syrichta
ENSCSAG00000011644	-	98	87.341	ENSCAPG00000001882	-	98	89.113	Cavia_aperea
ENSCSAG00000011644	-	100	87.174	ENSCPOG00000014812	-	98	89.321	Cavia_porcellus
ENSCSAG00000011644	-	82	90.746	ENSCCAG00000020938	-	100	90.455	Cebus_capucinus
ENSCSAG00000011644	-	82	90.808	ENSCATG00000013680	-	100	89.848	Cercocebus_atys
ENSCSAG00000011644	-	82	90.561	ENSCLAG00000012196	-	100	90.303	Chinchilla_lanigera
ENSCSAG00000011644	-	91	81.714	ENSCPBG00000012697	POLR2A	94	84.302	Chrysemys_picta_bellii
ENSCSAG00000011644	-	99	69.063	ENSCING00000007884	-	99	69.174	Ciona_intestinalis
ENSCSAG00000011644	-	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSCSAG00000011644	-	82	90.006	ENSCANG00000010622	-	100	89.178	Colobus_angolensis_palliatus
ENSCSAG00000011644	-	82	84.362	ENSCGRG00001003538	Polr2a	84	82.855	Cricetulus_griseus_chok1gshd
ENSCSAG00000011644	-	82	87.012	ENSCGRG00000012105	Polr2a	95	86.951	Cricetulus_griseus_crigri
ENSCSAG00000011644	-	82	85.274	ENSCSEG00000002635	polr2a	82	85.256	Cynoglossus_semilaevis
ENSCSAG00000011644	-	82	85.890	ENSCVAG00000005156	polr2a	82	85.873	Cyprinodon_variegatus
ENSCSAG00000011644	-	82	85.837	ENSDARG00000099966	polr2a	82	85.820	Danio_rerio
ENSCSAG00000011644	-	100	89.444	ENSDNOG00000016482	-	100	89.444	Dasypus_novemcinctus
ENSCSAG00000011644	-	82	90.746	ENSDORG00000008667	Polr2a	100	90.455	Dipodomys_ordii
ENSCSAG00000011644	-	99	63.512	FBgn0003277	RpII215	99	67.143	Drosophila_melanogaster
ENSCSAG00000011644	-	94	84.895	ENSETEG00000002540	-	87	85.605	Echinops_telfairi
ENSCSAG00000011644	-	81	79.740	ENSEBUG00000013967	polr2a	82	79.172	Eptatretus_burgeri
ENSCSAG00000011644	-	100	89.394	ENSEASG00005019114	-	100	89.495	Equus_asinus_asinus
ENSCSAG00000011644	-	82	90.685	ENSECAG00000018485	POLR2A	82	90.685	Equus_caballus
ENSCSAG00000011644	-	84	96.078	ENSEEUG00000001154	-	95	89.854	Erinaceus_europaeus
ENSCSAG00000011644	-	89	81.434	ENSELUG00000014284	polr2a	84	82.209	Esox_lucius
ENSCSAG00000011644	-	82	90.685	ENSFDAG00000008287	-	100	90.606	Fukomys_damarensis
ENSCSAG00000011644	-	85	85.890	ENSFHEG00000001768	polr2a	99	85.873	Fundulus_heteroclitus
ENSCSAG00000011644	-	99	82.455	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSCSAG00000011644	-	98	94.366	ENSGAFG00000005389	polr2a	99	83.652	Gambusia_affinis
ENSCSAG00000011644	-	99	82.823	ENSGACG00000019366	polr2a	100	80.483	Gasterosteus_aculeatus
ENSCSAG00000011644	-	100	90.625	ENSGGOG00000014800	-	96	97.972	Gorilla_gorilla
ENSCSAG00000011644	-	85	86.207	ENSHBUG00000018937	polr2a	99	85.441	Haplochromis_burtoni
ENSCSAG00000011644	-	82	90.685	ENSHGLG00000012381	POLR2A	100	90.404	Heterocephalus_glaber_female
ENSCSAG00000011644	-	82	90.685	ENSHGLG00100014843	POLR2A	100	90.404	Heterocephalus_glaber_male
ENSCSAG00000011644	-	82	85.089	ENSHCOG00000011874	polr2a	82	85.071	Hippocampus_comes
ENSCSAG00000011644	-	82	85.459	ENSIPUG00000002613	Polr2a	82	85.441	Ictalurus_punctatus
ENSCSAG00000011644	-	82	90.746	ENSSTOG00000001304	-	100	90.455	Ictidomys_tridecemlineatus
ENSCSAG00000011644	-	82	90.623	ENSJJAG00000013049	Polr2a	100	90.354	Jaculus_jaculus
ENSCSAG00000011644	-	76	91.793	ENSKMAG00000016343	polr2a	84	91.793	Kryptolebias_marmoratus
ENSCSAG00000011644	-	82	85.397	ENSLBEG00000027652	polr2a	82	85.379	Labrus_bergylta
ENSCSAG00000011644	-	80	78.225	ENSLACG00000012071	POLR2A	81	78.365	Latimeria_chalumnae
ENSCSAG00000011644	-	91	85.929	ENSLOCG00000013863	polr2a	99	85.741	Lepisosteus_oculatus
ENSCSAG00000011644	-	100	89.465	ENSLAFG00000008626	-	100	86.515	Loxodonta_africana
ENSCSAG00000011644	-	50	98.367	ENSMFAG00000007042	-	99	98.367	Macaca_fascicularis
ENSCSAG00000011644	-	82	90.808	ENSMMUG00000023620	-	100	90.505	Macaca_mulatta
ENSCSAG00000011644	-	82	90.808	ENSMNEG00000040407	-	100	90.186	Macaca_nemestrina
ENSCSAG00000011644	-	99	90.354	ENSMLEG00000030263	-	99	98.367	Mandrillus_leucophaeus
ENSCSAG00000011644	-	82	85.521	ENSMAMG00000003351	polr2a	82	85.503	Mastacembelus_armatus
ENSCSAG00000011644	-	82	85.459	ENSMZEG00005021429	polr2a	82	85.441	Maylandia_zebra
ENSCSAG00000011644	-	50	99.796	ENSMAUG00000021055	-	99	99.796	Mesocricetus_auratus
ENSCSAG00000011644	-	100	91.134	ENSMICG00000013372	-	98	98.569	Microcebus_murinus
ENSCSAG00000011644	-	100	86.232	ENSMOCG00000018279	Polr2a	100	86.156	Microtus_ochrogaster
ENSCSAG00000011644	-	87	85.151	ENSMMOG00000012515	polr2a	95	85.133	Mola_mola
ENSCSAG00000011644	-	82	90.253	ENSMODG00000007009	-	82	90.253	Monodelphis_domestica
ENSCSAG00000011644	-	94	82.903	ENSMALG00000008716	polr2a	99	83.529	Monopterus_albus
ENSCSAG00000011644	-	82	90.746	MGP_CAROLIEiJ_G0016587	Polr2a	100	90.404	Mus_caroli
ENSCSAG00000011644	-	82	90.746	ENSMUSG00000005198	Polr2a	100	90.404	Mus_musculus
ENSCSAG00000011644	-	82	90.166	MGP_PahariEiJ_G0017718	Polr2a	82	90.166	Mus_pahari
ENSCSAG00000011644	-	82	90.746	MGP_SPRETEiJ_G0017423	Polr2a	100	90.404	Mus_spretus
ENSCSAG00000011644	-	82	90.623	ENSMPUG00000009648	-	82	90.623	Mustela_putorius_furo
ENSCSAG00000011644	-	82	90.259	ENSMLUG00000009088	-	82	90.259	Myotis_lucifugus
ENSCSAG00000011644	-	82	90.746	ENSNGAG00000002543	Polr2a	100	90.455	Nannospalax_galili
ENSCSAG00000011644	-	82	83.426	ENSNBRG00000002005	polr2a	81	83.405	Neolamprologus_brichardi
ENSCSAG00000011644	-	100	91.230	ENSNLEG00000009460	-	100	91.230	Nomascus_leucogenys
ENSCSAG00000011644	-	94	99.347	ENSMEUG00000008611	-	96	99.347	Notamacropus_eugenii
ENSCSAG00000011644	-	80	90.458	ENSOPRG00000015116	-	100	88.834	Ochotona_princeps
ENSCSAG00000011644	-	82	85.644	ENSONIG00000009231	polr2a	82	85.626	Oreochromis_niloticus
ENSCSAG00000011644	-	100	89.854	ENSOCUG00000017929	-	100	89.650	Oryctolagus_cuniculus
ENSCSAG00000011644	-	82	85.521	ENSORLG00000006431	polr2a	82	85.503	Oryzias_latipes
ENSCSAG00000011644	-	82	85.521	ENSORLG00020010235	polr2a	82	85.503	Oryzias_latipes_hni
ENSCSAG00000011644	-	82	85.521	ENSORLG00015007075	polr2a	82	85.503	Oryzias_latipes_hsok
ENSCSAG00000011644	-	94	93.484	ENSOMEG00000010713	polr2a	100	85.608	Oryzias_melastigma
ENSCSAG00000011644	-	82	90.561	ENSOGAG00000033608	-	82	90.561	Otolemur_garnettii
ENSCSAG00000011644	-	90	90.746	ENSOARG00000013874	-	99	90.746	Ovis_aries
ENSCSAG00000011644	-	93	87.834	ENSPPAG00000043734	-	100	89.848	Pan_paniscus
ENSCSAG00000011644	-	100	91.230	ENSPTRG00000008691	POLR2A	100	91.230	Pan_troglodytes
ENSCSAG00000011644	-	82	90.006	ENSPANG00000024099	-	100	89.848	Papio_anubis
ENSCSAG00000011644	-	75	92.620	ENSPKIG00000005727	polr2a	79	92.620	Paramormyrops_kingsleyae
ENSCSAG00000011644	-	98	87.568	ENSPSIG00000014006	POLR2A	100	87.307	Pelodiscus_sinensis
ENSCSAG00000011644	-	100	85.619	ENSPMGG00000019734	polr2a	99	85.873	Periophthalmus_magnuspinnatus
ENSCSAG00000011644	-	82	90.746	ENSPEMG00000012521	Polr2a	100	90.455	Peromyscus_maniculatus_bairdii
ENSCSAG00000011644	-	86	90.259	ENSPCIG00000028851	-	82	90.253	Phascolarctos_cinereus
ENSCSAG00000011644	-	85	85.829	ENSPFOG00000007890	polr2a	99	85.811	Poecilia_formosa
ENSCSAG00000011644	-	85	85.829	ENSPLAG00000007399	polr2a	99	85.811	Poecilia_latipinna
ENSCSAG00000011644	-	85	85.829	ENSPMEG00000002071	polr2a	99	85.811	Poecilia_mexicana
ENSCSAG00000011644	-	82	85.767	ENSPREG00000013122	polr2a	82	85.750	Poecilia_reticulata
ENSCSAG00000011644	-	100	89.253	ENSPPYG00000007924	-	100	91.372	Pongo_abelii
ENSCSAG00000011644	-	74	99.606	ENSPCAG00000006951	-	74	99.606	Procavia_capensis
ENSCSAG00000011644	-	100	91.278	ENSPCOG00000025260	-	100	91.278	Propithecus_coquereli
ENSCSAG00000011644	-	82	90.500	ENSPVAG00000005069	-	82	90.438	Pteropus_vampyrus
ENSCSAG00000011644	-	83	89.286	ENSPNYG00000022340	polr2a	84	88.462	Pundamilia_nyererei
ENSCSAG00000011644	-	82	85.829	ENSPNAG00000011237	polr2a	82	85.811	Pygocentrus_nattereri
ENSCSAG00000011644	-	82	90.685	ENSRNOG00000028834	Polr2a	82	90.685	Rattus_norvegicus
ENSCSAG00000011644	-	82	90.438	ENSRBIG00000002471	-	100	89.091	Rhinopithecus_bieti
ENSCSAG00000011644	-	82	90.808	ENSRROG00000029583	-	93	89.944	Rhinopithecus_roxellana
ENSCSAG00000011644	-	83	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSCSAG00000011644	-	82	90.746	ENSSBOG00000000808	-	100	90.455	Saimiri_boliviensis_boliviensis
ENSCSAG00000011644	-	92	90.253	ENSSHAG00000002858	-	100	89.545	Sarcophilus_harrisii
ENSCSAG00000011644	-	82	85.829	ENSSFOG00015023275	polr2a	82	85.811	Scleropages_formosus
ENSCSAG00000011644	-	82	85.274	ENSSMAG00000009137	polr2a	82	85.256	Scophthalmus_maximus
ENSCSAG00000011644	-	82	85.644	ENSSDUG00000020466	polr2a	82	85.626	Seriola_dumerili
ENSCSAG00000011644	-	82	85.644	ENSSLDG00000020613	polr2a	82	85.626	Seriola_lalandi_dorsalis
ENSCSAG00000011644	-	91	86.147	ENSSARG00000005875	-	99	86.147	Sorex_araneus
ENSCSAG00000011644	-	100	85.705	ENSSPAG00000016741	polr2a	94	85.688	Stegastes_partitus
ENSCSAG00000011644	-	82	89.821	ENSSSCG00000028278	-	82	89.821	Sus_scrofa
ENSCSAG00000011644	-	94	93.258	ENSTRUG00000012320	polr2a	79	93.220	Takifugu_rubripes
ENSCSAG00000011644	-	99	84.350	ENSTNIG00000010136	polr2a	100	84.269	Tetraodon_nigroviridis
ENSCSAG00000011644	-	68	99.869	ENSTBEG00000013294	-	53	99.869	Tupaia_belangeri
ENSCSAG00000011644	-	82	88.896	ENSTTRG00000014273	-	82	88.834	Tursiops_truncatus
ENSCSAG00000011644	-	96	87.692	ENSUAMG00000014866	-	100	90.338	Ursus_americanus
ENSCSAG00000011644	-	74	99.441	ENSUMAG00000015732	-	82	97.283	Ursus_maritimus
ENSCSAG00000011644	-	65	97.342	ENSVPAG00000008842	-	75	97.342	Vicugna_pacos
ENSCSAG00000011644	-	100	89.057	ENSVVUG00000027878	-	100	90.960	Vulpes_vulpes
ENSCSAG00000011644	-	81	87.930	ENSXETG00000012465	polr2a	82	87.930	Xenopus_tropicalis
ENSCSAG00000011644	-	89	92.105	ENSXCOG00000001804	polr2a	94	88.136	Xiphophorus_couchianus
ENSCSAG00000011644	-	82	85.767	ENSXMAG00000015687	polr2a	82	85.750	Xiphophorus_maculatus