EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000013372 (Gene tree)
Gene ID: 103237890
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 126441 bases
Position: chr9:11967269-12093709
Accession: 103237890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000009534	Upf2	PF04050.14	3.7e-33	1	1
ENSCSAP00000009534	MIF4G	PF02854.19	7.1e-81	1	3
ENSCSAP00000009534	MIF4G	PF02854.19	7.1e-81	2	3
ENSCSAP00000009534	MIF4G	PF02854.19	7.1e-81	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000011465	UPF2-201	5202	XM_008002258	ENSCSAP00000009534	1272 (aa)	XP_008000449	A0A0D9RLP5

Gene Model

Click here to download ENSCSAG00000013372's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03013	RNA transport	KEGG
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000013372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000013372	UPF2	100	99.686	ENSG00000151461	UPF2	100	99.686	Homo_sapiens
ENSCSAG00000013372	UPF2	99	78.482	ENSAPOG00000015837	UPF2	100	78.326	Acanthochromis_polyacanthus
ENSCSAG00000013372	UPF2	100	97.956	ENSAMEG00000004586	UPF2	100	97.956	Ailuropoda_melanoleuca
ENSCSAG00000013372	UPF2	99	82.592	ENSACIG00000018078	UPF2	100	82.514	Amphilophus_citrinellus
ENSCSAG00000013372	UPF2	100	82.619	ENSAOCG00000016766	UPF2	100	82.697	Amphiprion_ocellaris
ENSCSAG00000013372	UPF2	100	82.697	ENSAPEG00000019084	UPF2	100	82.775	Amphiprion_percula
ENSCSAG00000013372	UPF2	100	82.440	ENSATEG00000021677	UPF2	99	82.646	Anabas_testudineus
ENSCSAG00000013372	UPF2	100	86.792	ENSAPLG00000010287	UPF2	100	86.321	Anas_platyrhynchos
ENSCSAG00000013372	UPF2	100	92.060	ENSACAG00000009259	UPF2	100	92.060	Anolis_carolinensis
ENSCSAG00000013372	UPF2	99	88.758	ENSANAG00000028451	UPF2	99	87.421	Aotus_nancymaae
ENSCSAG00000013372	UPF2	100	81.060	ENSACLG00000012696	UPF2	100	82.775	Astatotilapia_calliptera
ENSCSAG00000013372	UPF2	99	82.486	ENSAMXG00000013700	UPF2	99	82.877	Astyanax_mexicanus
ENSCSAG00000013372	UPF2	100	97.877	ENSBTAG00000000288	UPF2	100	97.877	Bos_taurus
ENSCSAG00000013372	UPF2	100	99.371	ENSCJAG00000020685	UPF2	100	99.371	Callithrix_jacchus
ENSCSAG00000013372	UPF2	100	97.956	ENSCAFG00000004839	UPF2	100	97.956	Canis_familiaris
ENSCSAG00000013372	UPF2	99	95.512	ENSCAFG00020005882	UPF2	100	95.512	Canis_lupus_dingo
ENSCSAG00000013372	UPF2	100	97.956	ENSCHIG00000020359	UPF2	100	97.956	Capra_hircus
ENSCSAG00000013372	UPF2	100	98.035	ENSTSYG00000000935	UPF2	100	98.035	Carlito_syrichta
ENSCSAG00000013372	UPF2	91	87.360	ENSCAPG00000016658	UPF2	100	86.367	Cavia_aperea
ENSCSAG00000013372	UPF2	99	95.642	ENSCPOG00000008809	UPF2	99	95.642	Cavia_porcellus
ENSCSAG00000013372	UPF2	100	93.789	ENSCCAG00000035991	UPF2	100	93.789	Cebus_capucinus
ENSCSAG00000013372	UPF2	100	99.921	ENSCATG00000032679	UPF2	100	99.921	Cercocebus_atys
ENSCSAG00000013372	UPF2	100	97.327	ENSCLAG00000011434	UPF2	100	97.327	Chinchilla_lanigera
ENSCSAG00000013372	UPF2	87	99.554	ENSCHOG00000000422	UPF2	89	99.554	Choloepus_hoffmanni
ENSCSAG00000013372	UPF2	99	92.756	ENSCPBG00000027823	UPF2	100	92.598	Chrysemys_picta_bellii
ENSCSAG00000013372	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSCSAG00000013372	UPF2	99	93.516	ENSCANG00000040396	UPF2	100	94.178	Colobus_angolensis_palliatus
ENSCSAG00000013372	UPF2	100	97.563	ENSCGRG00001019347	Upf2	100	97.563	Cricetulus_griseus_chok1gshd
ENSCSAG00000013372	UPF2	100	97.563	ENSCGRG00000017993	Upf2	100	97.563	Cricetulus_griseus_crigri
ENSCSAG00000013372	UPF2	91	80.723	ENSCSEG00000003520	UPF2	99	77.891	Cynoglossus_semilaevis
ENSCSAG00000013372	UPF2	99	82.182	ENSCVAG00000006167	UPF2	100	81.947	Cyprinodon_variegatus
ENSCSAG00000013372	UPF2	100	97.956	ENSDNOG00000018160	UPF2	100	97.956	Dasypus_novemcinctus
ENSCSAG00000013372	UPF2	100	97.170	ENSDORG00000002478	Upf2	100	97.170	Dipodomys_ordii
ENSCSAG00000013372	UPF2	89	36.439	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSCSAG00000013372	UPF2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
ENSCSAG00000013372	UPF2	69	68.358	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCSAG00000013372	UPF2	100	97.956	ENSEASG00005019274	UPF2	100	99.383	Equus_asinus_asinus
ENSCSAG00000013372	UPF2	100	98.035	ENSECAG00000017022	UPF2	100	98.035	Equus_caballus
ENSCSAG00000013372	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSCSAG00000013372	UPF2	99	81.499	ENSELUG00000012014	UPF2	100	81.832	Esox_lucius
ENSCSAG00000013372	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.799	Felis_catus
ENSCSAG00000013372	UPF2	100	91.352	ENSFALG00000001889	UPF2	98	93.160	Ficedula_albicollis
ENSCSAG00000013372	UPF2	100	97.170	ENSFDAG00000014348	UPF2	100	97.170	Fukomys_damarensis
ENSCSAG00000013372	UPF2	99	82.418	ENSFHEG00000009826	UPF2	100	82.311	Fundulus_heteroclitus
ENSCSAG00000013372	UPF2	91	83.938	ENSGMOG00000005557	UPF2	100	80.187	Gadus_morhua
ENSCSAG00000013372	UPF2	100	93.480	ENSGALG00000033772	UPF2	100	93.480	Gallus_gallus
ENSCSAG00000013372	UPF2	92	84.655	ENSGAFG00000020867	UPF2	100	81.606	Gambusia_affinis
ENSCSAG00000013372	UPF2	90	84.383	ENSGACG00000001080	UPF2	100	82.201	Gasterosteus_aculeatus
ENSCSAG00000013372	UPF2	100	92.925	ENSGAGG00000002700	UPF2	100	92.925	Gopherus_agassizii
ENSCSAG00000013372	UPF2	100	99.764	ENSGGOG00000001479	UPF2	100	99.764	Gorilla_gorilla
ENSCSAG00000013372	UPF2	100	80.904	ENSHBUG00000004249	UPF2	100	82.748	Haplochromis_burtoni
ENSCSAG00000013372	UPF2	100	97.248	ENSHGLG00000015176	-	100	97.248	Heterocephalus_glaber_female
ENSCSAG00000013372	UPF2	99	85.917	ENSHGLG00000003822	-	99	85.051	Heterocephalus_glaber_female
ENSCSAG00000013372	UPF2	99	93.071	ENSHGLG00100010036	UPF2	100	90.754	Heterocephalus_glaber_male
ENSCSAG00000013372	UPF2	100	80.590	ENSHCOG00000004025	UPF2	99	80.590	Hippocampus_comes
ENSCSAG00000013372	UPF2	100	81.528	ENSIPUG00000015524	UPF2	100	81.825	Ictalurus_punctatus
ENSCSAG00000013372	UPF2	100	97.642	ENSSTOG00000013075	UPF2	100	97.642	Ictidomys_tridecemlineatus
ENSCSAG00000013372	UPF2	100	96.462	ENSJJAG00000004913	Upf2	100	96.462	Jaculus_jaculus
ENSCSAG00000013372	UPF2	99	82.081	ENSKMAG00000001071	UPF2	100	82.353	Kryptolebias_marmoratus
ENSCSAG00000013372	UPF2	80	82.237	ENSLBEG00000000728	-	93	82.336	Labrus_bergylta
ENSCSAG00000013372	UPF2	100	82.764	ENSLBEG00000016394	-	99	82.815	Labrus_bergylta
ENSCSAG00000013372	UPF2	99	77.839	ENSLACG00000015945	UPF2	100	79.327	Latimeria_chalumnae
ENSCSAG00000013372	UPF2	99	84.646	ENSLOCG00000015698	UPF2	100	85.984	Lepisosteus_oculatus
ENSCSAG00000013372	UPF2	100	99.843	ENSMFAG00000043865	UPF2	100	99.843	Macaca_fascicularis
ENSCSAG00000013372	UPF2	100	99.843	ENSMMUG00000008241	UPF2	100	99.843	Macaca_mulatta
ENSCSAG00000013372	UPF2	81	99.512	ENSMNEG00000008062	UPF2	100	99.512	Macaca_nemestrina
ENSCSAG00000013372	UPF2	99	96.873	ENSMLEG00000036120	UPF2	100	100.000	Mandrillus_leucophaeus
ENSCSAG00000013372	UPF2	100	82.284	ENSMAMG00000018276	UPF2	100	82.412	Mastacembelus_armatus
ENSCSAG00000013372	UPF2	100	81.060	ENSMZEG00005021595	UPF2	100	82.775	Maylandia_zebra
ENSCSAG00000013372	UPF2	99	92.846	ENSMGAG00000004573	UPF2	99	92.846	Meleagris_gallopavo
ENSCSAG00000013372	UPF2	100	95.204	ENSMAUG00000016512	Upf2	100	95.204	Mesocricetus_auratus
ENSCSAG00000013372	UPF2	99	94.094	ENSMICG00000001716	UPF2	100	94.094	Microcebus_murinus
ENSCSAG00000013372	UPF2	100	96.934	ENSMOCG00000008263	Upf2	100	96.934	Microtus_ochrogaster
ENSCSAG00000013372	UPF2	99	80.016	ENSMMOG00000006528	UPF2	100	80.282	Mola_mola
ENSCSAG00000013372	UPF2	100	95.597	ENSMODG00000016794	UPF2	100	95.597	Monodelphis_domestica
ENSCSAG00000013372	UPF2	99	82.188	ENSMALG00000002663	UPF2	100	82.160	Monopterus_albus
ENSCSAG00000013372	UPF2	100	97.170	MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	Mus_caroli
ENSCSAG00000013372	UPF2	100	97.170	ENSMUSG00000043241	Upf2	100	97.170	Mus_musculus
ENSCSAG00000013372	UPF2	100	96.777	MGP_PahariEiJ_G0019217	Upf2	100	97.524	Mus_pahari
ENSCSAG00000013372	UPF2	100	97.406	MGP_SPRETEiJ_G0024075	Upf2	100	97.905	Mus_spretus
ENSCSAG00000013372	UPF2	100	97.956	ENSMPUG00000001064	UPF2	100	97.956	Mustela_putorius_furo
ENSCSAG00000013372	UPF2	99	97.253	ENSMLUG00000000228	UPF2	100	97.253	Myotis_lucifugus
ENSCSAG00000013372	UPF2	100	81.060	ENSNBRG00000013629	UPF2	100	82.775	Neolamprologus_brichardi
ENSCSAG00000013372	UPF2	100	99.686	ENSNLEG00000012058	UPF2	100	99.686	Nomascus_leucogenys
ENSCSAG00000013372	UPF2	61	97.927	ENSMEUG00000002180	-	60	97.927	Notamacropus_eugenii
ENSCSAG00000013372	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSCSAG00000013372	UPF2	100	96.777	ENSODEG00000001290	UPF2	100	96.777	Octodon_degus
ENSCSAG00000013372	UPF2	100	81.138	ENSONIG00000017991	UPF2	100	82.853	Oreochromis_niloticus
ENSCSAG00000013372	UPF2	99	97.181	ENSOCUG00000006230	UPF2	100	97.181	Oryctolagus_cuniculus
ENSCSAG00000013372	UPF2	100	81.260	ENSORLG00000017189	UPF2	100	81.995	Oryzias_latipes
ENSCSAG00000013372	UPF2	100	81.260	ENSORLG00020005969	UPF2	100	81.995	Oryzias_latipes_hni
ENSCSAG00000013372	UPF2	100	81.260	ENSORLG00015005713	UPF2	100	81.995	Oryzias_latipes_hsok
ENSCSAG00000013372	UPF2	99	77.708	ENSOMEG00000023420	UPF2	98	79.062	Oryzias_melastigma
ENSCSAG00000013372	UPF2	100	98.585	ENSOGAG00000005796	UPF2	100	98.585	Otolemur_garnettii
ENSCSAG00000013372	UPF2	100	97.802	ENSOARG00000014587	UPF2	100	97.802	Ovis_aries
ENSCSAG00000013372	UPF2	99	96.013	ENSPPAG00000037953	UPF2	100	96.013	Pan_paniscus
ENSCSAG00000013372	UPF2	100	97.799	ENSPPRG00000000690	UPF2	100	97.799	Panthera_pardus
ENSCSAG00000013372	UPF2	100	97.799	ENSPTIG00000008867	UPF2	100	97.799	Panthera_tigris_altaica
ENSCSAG00000013372	UPF2	100	99.764	ENSPTRG00000002291	UPF2	100	99.764	Pan_troglodytes
ENSCSAG00000013372	UPF2	100	99.843	ENSPANG00000023399	UPF2	100	99.843	Papio_anubis
ENSCSAG00000013372	UPF2	100	80.733	ENSPKIG00000025502	UPF2	100	81.995	Paramormyrops_kingsleyae
ENSCSAG00000013372	UPF2	59	91.512	ENSPSIG00000015158	UPF2	95	91.512	Pelodiscus_sinensis
ENSCSAG00000013372	UPF2	99	79.670	ENSPMGG00000005259	UPF2	100	80.455	Periophthalmus_magnuspinnatus
ENSCSAG00000013372	UPF2	93	94.186	ENSPEMG00000015731	Upf2	99	94.186	Peromyscus_maniculatus_bairdii
ENSCSAG00000013372	UPF2	100	93.239	ENSPCIG00000006656	UPF2	100	95.283	Phascolarctos_cinereus
ENSCSAG00000013372	UPF2	100	79.891	ENSPFOG00000017118	UPF2	100	81.917	Poecilia_formosa
ENSCSAG00000013372	UPF2	100	79.891	ENSPLAG00000005094	UPF2	100	81.917	Poecilia_latipinna
ENSCSAG00000013372	UPF2	100	79.891	ENSPMEG00000017009	UPF2	100	81.917	Poecilia_mexicana
ENSCSAG00000013372	UPF2	99	79.656	ENSPREG00000021880	UPF2	100	82.081	Poecilia_reticulata
ENSCSAG00000013372	UPF2	66	99.880	ENSPPYG00000002089	-	100	99.880	Pongo_abelii
ENSCSAG00000013372	UPF2	100	83.491	ENSPCAG00000000684	UPF2	100	83.491	Procavia_capensis
ENSCSAG00000013372	UPF2	99	95.748	ENSPCOG00000021656	UPF2	100	95.827	Propithecus_coquereli
ENSCSAG00000013372	UPF2	100	90.259	ENSPVAG00000017286	UPF2	100	90.259	Pteropus_vampyrus
ENSCSAG00000013372	UPF2	99	78.610	ENSPNYG00000017096	UPF2	100	80.328	Pundamilia_nyererei
ENSCSAG00000013372	UPF2	100	82.697	ENSPNAG00000009357	UPF2	100	83.164	Pygocentrus_nattereri
ENSCSAG00000013372	UPF2	99	90.824	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSCSAG00000013372	UPF2	99	98.740	ENSRBIG00000037780	UPF2	100	98.740	Rhinopithecus_bieti
ENSCSAG00000013372	UPF2	100	99.764	ENSRROG00000043547	UPF2	100	99.764	Rhinopithecus_roxellana
ENSCSAG00000013372	UPF2	100	99.057	ENSSBOG00000020012	UPF2	100	99.057	Saimiri_boliviensis_boliviensis
ENSCSAG00000013372	UPF2	100	81.698	ENSSFOG00015023788	upf2	100	82.788	Scleropages_formosus
ENSCSAG00000013372	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	80.155	Scophthalmus_maximus
ENSCSAG00000013372	UPF2	100	82.307	ENSSDUG00000017244	UPF2	99	82.775	Seriola_dumerili
ENSCSAG00000013372	UPF2	99	80.595	ENSSLDG00000016866	UPF2	100	81.142	Seriola_lalandi_dorsalis
ENSCSAG00000013372	UPF2	100	95.597	ENSSARG00000008615	UPF2	100	95.597	Sorex_araneus
ENSCSAG00000013372	UPF2	99	90.087	ENSSPUG00000014544	UPF2	99	90.087	Sphenodon_punctatus
ENSCSAG00000013372	UPF2	68	99.079	ENSSSCG00000011117	-	100	99.079	Sus_scrofa
ENSCSAG00000013372	UPF2	99	91.332	ENSTGUG00000002163	-	100	93.144	Taeniopygia_guttata
ENSCSAG00000013372	UPF2	100	81.790	ENSTRUG00000007519	UPF2	99	82.151	Takifugu_rubripes
ENSCSAG00000013372	UPF2	100	80.109	ENSTNIG00000004453	UPF2	100	80.000	Tetraodon_nigroviridis
ENSCSAG00000013372	UPF2	93	90.525	ENSTBEG00000012679	UPF2	93	90.863	Tupaia_belangeri
ENSCSAG00000013372	UPF2	100	97.877	ENSTTRG00000016388	UPF2	100	97.877	Tursiops_truncatus
ENSCSAG00000013372	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSCSAG00000013372	UPF2	100	98.192	ENSUMAG00000012953	UPF2	95	98.192	Ursus_maritimus
ENSCSAG00000013372	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCSAG00000013372	UPF2	100	97.877	ENSVVUG00000006166	UPF2	100	97.877	Vulpes_vulpes
ENSCSAG00000013372	UPF2	100	83.450	ENSXETG00000033103	UPF2	91	89.014	Xenopus_tropicalis
ENSCSAG00000013372	UPF2	92	84.458	ENSXCOG00000011604	UPF2	100	81.577	Xiphophorus_couchianus
ENSCSAG00000013372	UPF2	92	84.740	ENSXMAG00000017209	UPF2	100	81.606	Xiphophorus_maculatus