EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000013800 (Gene tree)
Gene ID: 103242129
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 245093 bases
Position: chr16:1695647-1940739
Accession: 103242129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000009953	EST1	PF10374.9	2.3e-15	1	1
ENSCSAP00000009953	EST1_DNA_bind	PF10373.9	2.1e-61	1	1
ENSCSAP00000009953	PIN_4	PF13638.6	6.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000011895	SMG6-201	8367	-	ENSCSAP00000009953	1419 (aa)	XP_008008009	A0A0D9RMW4

Gene Model

Click here to download ENSCSAG00000013800's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000013800's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000013800	SMG6	100	97.040	ENSG00000070366	SMG6	100	99.413	Homo_sapiens
ENSCSAG00000013800	SMG6	83	54.894	ENSAPOG00000019448	smg6	74	55.070	Acanthochromis_polyacanthus
ENSCSAG00000013800	SMG6	100	93.446	ENSAMEG00000007632	SMG6	100	93.446	Ailuropoda_melanoleuca
ENSCSAG00000013800	SMG6	71	59.762	ENSAOCG00000002630	smg6	74	55.312	Amphiprion_ocellaris
ENSCSAG00000013800	SMG6	71	59.762	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSCSAG00000013800	SMG6	83	55.199	ENSATEG00000006483	smg6	73	55.089	Anabas_testudineus
ENSCSAG00000013800	SMG6	87	58.031	ENSACAG00000011783	SMG6	99	59.355	Anolis_carolinensis
ENSCSAG00000013800	SMG6	100	96.124	ENSANAG00000035760	SMG6	100	96.124	Aotus_nancymaae
ENSCSAG00000013800	SMG6	71	59.447	ENSACLG00000005288	smg6	84	53.903	Astatotilapia_calliptera
ENSCSAG00000013800	SMG6	73	61.349	ENSAMXG00000017326	smg6	99	50.587	Astyanax_mexicanus
ENSCSAG00000013800	SMG6	100	93.305	ENSBTAG00000000267	SMG6	100	93.305	Bos_taurus
ENSCSAG00000013800	SMG6	100	95.560	ENSCJAG00000001820	SMG6	100	95.560	Callithrix_jacchus
ENSCSAG00000013800	SMG6	100	93.376	ENSCAFG00000019260	SMG6	100	93.376	Canis_familiaris
ENSCSAG00000013800	SMG6	100	93.376	ENSCAFG00020009770	SMG6	100	93.376	Canis_lupus_dingo
ENSCSAG00000013800	SMG6	100	93.164	ENSCHIG00000021998	SMG6	100	93.164	Capra_hircus
ENSCSAG00000013800	SMG6	100	93.658	ENSTSYG00000003406	SMG6	100	96.869	Carlito_syrichta
ENSCSAG00000013800	SMG6	98	77.266	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSCSAG00000013800	SMG6	100	90.775	ENSCPOG00000014878	SMG6	100	90.775	Cavia_porcellus
ENSCSAG00000013800	SMG6	100	96.054	ENSCCAG00000035801	SMG6	100	96.054	Cebus_capucinus
ENSCSAG00000013800	SMG6	100	99.013	ENSCATG00000031956	SMG6	100	99.013	Cercocebus_atys
ENSCSAG00000013800	SMG6	100	92.530	ENSCLAG00000006748	SMG6	100	92.530	Chinchilla_lanigera
ENSCSAG00000013800	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSCSAG00000013800	SMG6	100	72.330	ENSCPBG00000020369	SMG6	100	72.885	Chrysemys_picta_bellii
ENSCSAG00000013800	SMG6	98	98.848	ENSCANG00000031764	SMG6	100	99.804	Colobus_angolensis_palliatus
ENSCSAG00000013800	SMG6	55	88.107	ENSCGRG00001019595	Smg6	100	88.107	Cricetulus_griseus_chok1gshd
ENSCSAG00000013800	SMG6	98	85.086	ENSCGRG00000007782	Smg6	100	85.231	Cricetulus_griseus_crigri
ENSCSAG00000013800	SMG6	87	53.544	ENSCSEG00000012757	smg6	83	52.426	Cynoglossus_semilaevis
ENSCSAG00000013800	SMG6	74	56.830	ENSCVAG00000012789	smg6	74	53.496	Cyprinodon_variegatus
ENSCSAG00000013800	SMG6	96	55.786	ENSDARG00000100481	smg6	90	56.571	Danio_rerio
ENSCSAG00000013800	SMG6	100	92.812	ENSDNOG00000048283	SMG6	100	92.812	Dasypus_novemcinctus
ENSCSAG00000013800	SMG6	100	89.193	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSCSAG00000013800	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSCSAG00000013800	SMG6	73	49.903	ENSEBUG00000005059	smg6	71	49.855	Eptatretus_burgeri
ENSCSAG00000013800	SMG6	99	94.072	ENSEASG00005009318	SMG6	99	94.072	Equus_asinus_asinus
ENSCSAG00000013800	SMG6	99	93.790	ENSECAG00000006519	SMG6	99	93.790	Equus_caballus
ENSCSAG00000013800	SMG6	100	82.100	ENSEEUG00000003493	SMG6	100	82.100	Erinaceus_europaeus
ENSCSAG00000013800	SMG6	71	60.370	ENSELUG00000005934	smg6	69	55.471	Esox_lucius
ENSCSAG00000013800	SMG6	100	94.362	ENSFCAG00000028817	SMG6	100	94.362	Felis_catus
ENSCSAG00000013800	SMG6	98	71.815	ENSFALG00000006538	SMG6	100	71.886	Ficedula_albicollis
ENSCSAG00000013800	SMG6	100	92.107	ENSFDAG00000015106	SMG6	100	92.107	Fukomys_damarensis
ENSCSAG00000013800	SMG6	83	53.307	ENSFHEG00000013282	smg6	75	53.463	Fundulus_heteroclitus
ENSCSAG00000013800	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSCSAG00000013800	SMG6	100	71.895	ENSGALG00000003108	SMG6	98	71.964	Gallus_gallus
ENSCSAG00000013800	SMG6	83	53.997	ENSGAFG00000000379	smg6	74	54.304	Gambusia_affinis
ENSCSAG00000013800	SMG6	91	53.982	ENSGACG00000020521	smg6	100	53.687	Gasterosteus_aculeatus
ENSCSAG00000013800	SMG6	98	71.986	ENSGAGG00000025617	SMG6	100	72.553	Gopherus_agassizii
ENSCSAG00000013800	SMG6	100	98.168	ENSGGOG00000017156	SMG6	100	98.168	Gorilla_gorilla
ENSCSAG00000013800	SMG6	88	53.086	ENSHBUG00000021311	smg6	80	53.299	Haplochromis_burtoni
ENSCSAG00000013800	SMG6	100	91.837	ENSHGLG00000012882	SMG6	100	91.837	Heterocephalus_glaber_female
ENSCSAG00000013800	SMG6	100	91.907	ENSHGLG00100017815	SMG6	100	91.907	Heterocephalus_glaber_male
ENSCSAG00000013800	SMG6	71	59.065	ENSHCOG00000008761	smg6	83	59.009	Hippocampus_comes
ENSCSAG00000013800	SMG6	83	55.582	ENSIPUG00000012493	smg6	75	54.894	Ictalurus_punctatus
ENSCSAG00000013800	SMG6	100	94.010	ENSSTOG00000028127	SMG6	100	94.010	Ictidomys_tridecemlineatus
ENSCSAG00000013800	SMG6	79	88.671	ENSJJAG00000015367	Smg6	95	86.742	Jaculus_jaculus
ENSCSAG00000013800	SMG6	73	59.246	ENSKMAG00000000279	smg6	91	49.069	Kryptolebias_marmoratus
ENSCSAG00000013800	SMG6	55	58.852	ENSLACG00000000806	-	98	59.295	Latimeria_chalumnae
ENSCSAG00000013800	SMG6	73	65.575	ENSLOCG00000006448	smg6	100	55.301	Lepisosteus_oculatus
ENSCSAG00000013800	SMG6	100	93.023	ENSLAFG00000001261	SMG6	100	93.023	Loxodonta_africana
ENSCSAG00000013800	SMG6	100	99.507	ENSMFAG00000003394	SMG6	100	99.507	Macaca_fascicularis
ENSCSAG00000013800	SMG6	100	99.436	ENSMMUG00000023161	SMG6	100	99.436	Macaca_mulatta
ENSCSAG00000013800	SMG6	100	94.238	ENSMNEG00000044592	SMG6	100	94.238	Macaca_nemestrina
ENSCSAG00000013800	SMG6	98	97.044	ENSMLEG00000029353	SMG6	100	99.812	Mandrillus_leucophaeus
ENSCSAG00000013800	SMG6	83	56.216	ENSMAMG00000020119	smg6	98	49.871	Mastacembelus_armatus
ENSCSAG00000013800	SMG6	71	59.467	ENSMZEG00005024736	smg6	77	54.070	Maylandia_zebra
ENSCSAG00000013800	SMG6	73	66.509	ENSMGAG00000005401	-	99	66.509	Meleagris_gallopavo
ENSCSAG00000013800	SMG6	100	95.208	ENSMICG00000012913	SMG6	100	95.208	Microcebus_murinus
ENSCSAG00000013800	SMG6	100	48.230	ENSMMOG00000010883	smg6	100	48.436	Mola_mola
ENSCSAG00000013800	SMG6	100	86.217	ENSMODG00000010622	SMG6	100	86.217	Monodelphis_domestica
ENSCSAG00000013800	SMG6	83	54.779	ENSMALG00000001106	smg6	73	55.280	Monopterus_albus
ENSCSAG00000013800	SMG6	100	91.825	MGP_CAROLIEiJ_G0016729	Smg6	100	91.825	Mus_caroli
ENSCSAG00000013800	SMG6	100	91.614	ENSMUSG00000038290	Smg6	100	91.614	Mus_musculus
ENSCSAG00000013800	SMG6	100	91.191	MGP_PahariEiJ_G0017866	Smg6	100	91.191	Mus_pahari
ENSCSAG00000013800	SMG6	100	91.614	MGP_SPRETEiJ_G0017572	Smg6	100	91.614	Mus_spretus
ENSCSAG00000013800	SMG6	100	93.658	ENSMPUG00000013046	SMG6	100	93.658	Mustela_putorius_furo
ENSCSAG00000013800	SMG6	100	92.953	ENSMLUG00000005739	SMG6	100	92.953	Myotis_lucifugus
ENSCSAG00000013800	SMG6	98	90.857	ENSNGAG00000007287	Smg6	100	90.857	Nannospalax_galili
ENSCSAG00000013800	SMG6	88	52.506	ENSNBRG00000009511	smg6	85	53.547	Neolamprologus_brichardi
ENSCSAG00000013800	SMG6	98	97.489	ENSNLEG00000017171	SMG6	100	99.217	Nomascus_leucogenys
ENSCSAG00000013800	SMG6	98	82.615	ENSMEUG00000015804	SMG6	100	82.615	Notamacropus_eugenii
ENSCSAG00000013800	SMG6	62	90.950	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSCSAG00000013800	SMG6	100	84.469	ENSODEG00000008038	SMG6	100	84.469	Octodon_degus
ENSCSAG00000013800	SMG6	100	51.071	ENSONIG00000005594	smg6	100	52.032	Oreochromis_niloticus
ENSCSAG00000013800	SMG6	100	93.244	ENSOCUG00000013018	SMG6	100	93.385	Oryctolagus_cuniculus
ENSCSAG00000013800	SMG6	83	54.803	ENSORLG00000003317	smg6	74	54.945	Oryzias_latipes
ENSCSAG00000013800	SMG6	83	54.653	ENSORLG00020015343	smg6	74	54.481	Oryzias_latipes_hni
ENSCSAG00000013800	SMG6	83	54.524	ENSORLG00015020454	smg6	74	54.745	Oryzias_latipes_hsok
ENSCSAG00000013800	SMG6	83	53.695	ENSOMEG00000010838	smg6	75	54.137	Oryzias_melastigma
ENSCSAG00000013800	SMG6	100	94.718	ENSOGAG00000004483	SMG6	100	94.718	Otolemur_garnettii
ENSCSAG00000013800	SMG6	100	91.479	ENSOARG00000015076	SMG6	100	93.069	Ovis_aries
ENSCSAG00000013800	SMG6	100	98.027	ENSPPAG00000043296	SMG6	100	98.027	Pan_paniscus
ENSCSAG00000013800	SMG6	100	94.433	ENSPPRG00000014581	SMG6	100	94.433	Panthera_pardus
ENSCSAG00000013800	SMG6	98	94.585	ENSPTIG00000008925	SMG6	100	97.456	Panthera_tigris_altaica
ENSCSAG00000013800	SMG6	100	98.097	ENSPTRG00000008544	SMG6	100	99.413	Pan_troglodytes
ENSCSAG00000013800	SMG6	100	99.366	ENSPANG00000024588	SMG6	100	99.366	Papio_anubis
ENSCSAG00000013800	SMG6	89	70.993	ENSPSIG00000006660	SMG6	96	71.071	Pelodiscus_sinensis
ENSCSAG00000013800	SMG6	100	49.901	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSCSAG00000013800	SMG6	100	92.459	ENSPEMG00000020707	Smg6	100	92.459	Peromyscus_maniculatus_bairdii
ENSCSAG00000013800	SMG6	100	51.839	ENSPFOG00000012035	smg6	100	51.810	Poecilia_formosa
ENSCSAG00000013800	SMG6	77	57.033	ENSPLAG00000017660	smg6	74	54.481	Poecilia_latipinna
ENSCSAG00000013800	SMG6	77	56.752	ENSPMEG00000000258	smg6	74	54.796	Poecilia_mexicana
ENSCSAG00000013800	SMG6	83	54.788	ENSPREG00000010066	smg6	74	54.710	Poecilia_reticulata
ENSCSAG00000013800	SMG6	100	92.335	ENSPPYG00000007790	SMG6	100	92.335	Pongo_abelii
ENSCSAG00000013800	SMG6	100	88.724	ENSPCAG00000000552	SMG6	100	88.724	Procavia_capensis
ENSCSAG00000013800	SMG6	100	94.996	ENSPCOG00000020925	SMG6	100	94.996	Propithecus_coquereli
ENSCSAG00000013800	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSCSAG00000013800	SMG6	88	53.917	ENSPNYG00000024151	smg6	83	55.966	Pundamilia_nyererei
ENSCSAG00000013800	SMG6	85	53.307	ENSPNAG00000015480	smg6	91	47.870	Pygocentrus_nattereri
ENSCSAG00000013800	SMG6	100	91.966	ENSRNOG00000003041	Smg6	100	91.966	Rattus_norvegicus
ENSCSAG00000013800	SMG6	100	98.661	ENSRBIG00000024746	SMG6	100	98.661	Rhinopithecus_bieti
ENSCSAG00000013800	SMG6	100	98.732	ENSRROG00000030423	SMG6	100	99.413	Rhinopithecus_roxellana
ENSCSAG00000013800	SMG6	100	95.983	ENSSBOG00000022518	SMG6	100	94.362	Saimiri_boliviensis_boliviensis
ENSCSAG00000013800	SMG6	98	85.509	ENSSHAG00000010045	SMG6	98	85.509	Sarcophilus_harrisii
ENSCSAG00000013800	SMG6	72	62.326	ENSSFOG00015005436	smg6	73	55.120	Scleropages_formosus
ENSCSAG00000013800	SMG6	83	55.478	ENSSMAG00000019777	smg6	73	55.105	Scophthalmus_maximus
ENSCSAG00000013800	SMG6	83	55.191	ENSSDUG00000016412	smg6	74	55.148	Seriola_dumerili
ENSCSAG00000013800	SMG6	80	54.332	ENSSLDG00000020747	smg6	77	54.207	Seriola_lalandi_dorsalis
ENSCSAG00000013800	SMG6	99	70.265	ENSSPUG00000007152	SMG6	99	70.265	Sphenodon_punctatus
ENSCSAG00000013800	SMG6	71	59.450	ENSSPAG00000015633	smg6	74	55.024	Stegastes_partitus
ENSCSAG00000013800	SMG6	100	92.817	ENSSSCG00000017826	SMG6	100	92.817	Sus_scrofa
ENSCSAG00000013800	SMG6	100	72.339	ENSTGUG00000005836	SMG6	100	72.479	Taeniopygia_guttata
ENSCSAG00000013800	SMG6	83	54.798	ENSTRUG00000000358	smg6	81	55.466	Takifugu_rubripes
ENSCSAG00000013800	SMG6	100	49.901	ENSTNIG00000016164	smg6	100	50.331	Tetraodon_nigroviridis
ENSCSAG00000013800	SMG6	100	89.500	ENSTBEG00000011424	SMG6	100	89.500	Tupaia_belangeri
ENSCSAG00000013800	SMG6	91	91.818	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSCSAG00000013800	SMG6	100	93.671	ENSUAMG00000025152	SMG6	100	93.732	Ursus_americanus
ENSCSAG00000013800	SMG6	98	94.079	ENSUMAG00000009306	SMG6	100	94.079	Ursus_maritimus
ENSCSAG00000013800	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSCSAG00000013800	SMG6	100	93.235	ENSVVUG00000021727	SMG6	100	93.235	Vulpes_vulpes
ENSCSAG00000013800	SMG6	98	59.309	ENSXETG00000023799	SMG6	100	59.097	Xenopus_tropicalis
ENSCSAG00000013800	SMG6	72	59.889	ENSXCOG00000009867	smg6	74	55.104	Xiphophorus_couchianus
ENSCSAG00000013800	SMG6	83	54.538	ENSXMAG00000010321	smg6	74	54.183	Xiphophorus_maculatus