EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000017794 (Gene tree)
Gene ID: 103246783
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Plus strand
Length: 15353 bases
Position: chr28:13726667-13742019
Accession: 103246783
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000013817	PPR	PF01535.20	1.6e-16	1	2
ENSCSAP00000013817	PPR	PF01535.20	1.6e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000015891	-	2197	XM_008018656	ENSCSAP00000013817	674 (aa)	XP_008016847	A0A0D9RYX8

Gene Model

Click here to download ENSCSAG00000017794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000017794's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000017794	-	95	93.760	ENSG00000106246	PTCD1	100	87.879	Homo_sapiens
ENSCSAG00000017794	-	95	93.760	ENSG00000248919	ATP5MF-PTCD1	85	93.916	Homo_sapiens
ENSCSAG00000017794	-	82	46.797	ENSAPOG00000010679	ptcd1	85	46.786	Acanthochromis_polyacanthus
ENSCSAG00000017794	-	95	76.959	ENSAMEG00000006224	-	85	76.651	Ailuropoda_melanoleuca
ENSCSAG00000017794	-	82	48.673	ENSACIG00000017861	ptcd1	79	48.404	Amphilophus_citrinellus
ENSCSAG00000017794	-	93	44.914	ENSAOCG00000022617	ptcd1	81	48.214	Amphiprion_ocellaris
ENSCSAG00000017794	-	88	46.231	ENSAOCG00000020741	-	77	48.122	Amphiprion_ocellaris
ENSCSAG00000017794	-	92	45.295	ENSAPEG00000022632	ptcd1	77	47.943	Amphiprion_percula
ENSCSAG00000017794	-	84	49.735	ENSATEG00000007016	ptcd1	76	49.554	Anabas_testudineus
ENSCSAG00000017794	-	82	59.043	ENSAPLG00000006862	-	86	58.865	Anas_platyrhynchos
ENSCSAG00000017794	-	95	55.008	ENSACAG00000012871	-	85	55.008	Anolis_carolinensis
ENSCSAG00000017794	-	95	88.975	ENSANAG00000035790	-	94	88.820	Aotus_nancymaae
ENSCSAG00000017794	-	82	48.663	ENSACLG00000002824	ptcd1	76	48.571	Astatotilapia_calliptera
ENSCSAG00000017794	-	89	44.976	ENSAMXG00000037292	ptcd1	88	46.192	Astyanax_mexicanus
ENSCSAG00000017794	-	95	76.780	ENSBTAG00000020440	-	80	76.471	Bos_taurus
ENSCSAG00000017794	-	95	89.907	ENSCJAG00000015815	-	91	89.596	Callithrix_jacchus
ENSCSAG00000017794	-	95	76.080	ENSCAFG00000015055	-	85	75.772	Canis_familiaris
ENSCSAG00000017794	-	98	74.925	ENSCAFG00020014480	-	85	75.772	Canis_lupus_dingo
ENSCSAG00000017794	-	95	76.124	ENSCHIG00000027000	-	91	75.814	Capra_hircus
ENSCSAG00000017794	-	95	79.938	ENSTSYG00000029495	-	92	79.475	Carlito_syrichta
ENSCSAG00000017794	-	89	74.210	ENSCAPG00000014660	-	91	73.710	Cavia_aperea
ENSCSAG00000017794	-	99	70.968	ENSCPOG00000001780	-	91	73.148	Cavia_porcellus
ENSCSAG00000017794	-	95	88.217	ENSCCAG00000034025	-	91	88.372	Cebus_capucinus
ENSCSAG00000017794	-	95	97.816	ENSCATG00000040859	-	91	97.816	Cercocebus_atys
ENSCSAG00000017794	-	95	75.846	ENSCLAG00000006354	-	91	75.385	Chinchilla_lanigera
ENSCSAG00000017794	-	95	53.634	ENSCPBG00000020866	-	92	52.525	Chrysemys_picta_bellii
ENSCSAG00000017794	-	82	31.449	ENSCING00000007717	-	87	32.177	Ciona_intestinalis
ENSCSAG00000017794	-	95	95.632	ENSCANG00000023441	-	91	95.632	Colobus_angolensis_palliatus
ENSCSAG00000017794	-	95	74.379	ENSCGRG00001023686	Ptcd1	91	74.379	Cricetulus_griseus_chok1gshd
ENSCSAG00000017794	-	95	73.920	ENSCGRG00000015031	Ptcd1	91	73.920	Cricetulus_griseus_crigri
ENSCSAG00000017794	-	83	47.090	ENSCSEG00000002378	ptcd1	76	47.415	Cynoglossus_semilaevis
ENSCSAG00000017794	-	82	48.490	ENSCVAG00000003621	ptcd1	82	47.857	Cyprinodon_variegatus
ENSCSAG00000017794	-	82	48.490	ENSCVAG00000015826	ptcd1	77	47.857	Cyprinodon_variegatus
ENSCSAG00000017794	-	85	49.322	ENSDARG00000076176	ptcd1	84	48.414	Danio_rerio
ENSCSAG00000017794	-	95	72.435	ENSDNOG00000009957	-	92	73.047	Dasypus_novemcinctus
ENSCSAG00000017794	-	95	74.303	ENSDORG00000000740	Ptcd1	92	73.994	Dipodomys_ordii
ENSCSAG00000017794	-	89	40.896	ENSEBUG00000014515	ptcd1	90	41.978	Eptatretus_burgeri
ENSCSAG00000017794	-	95	78.560	ENSEASG00005002480	-	92	77.948	Equus_asinus_asinus
ENSCSAG00000017794	-	95	79.020	ENSECAG00000016617	-	94	78.407	Equus_caballus
ENSCSAG00000017794	-	82	47.039	ENSELUG00000016517	ptcd1	77	47.029	Esox_lucius
ENSCSAG00000017794	-	95	75.655	ENSFCAG00000015069	-	91	75.193	Felis_catus
ENSCSAG00000017794	-	89	57.325	ENSFALG00000013803	-	85	58.548	Ficedula_albicollis
ENSCSAG00000017794	-	95	75.659	ENSFDAG00000006393	-	91	75.504	Fukomys_damarensis
ENSCSAG00000017794	-	73	47.273	ENSFHEG00000012491	ptcd1	83	47.273	Fundulus_heteroclitus
ENSCSAG00000017794	-	81	47.541	ENSGMOG00000007639	ptcd1	87	47.541	Gadus_morhua
ENSCSAG00000017794	-	88	57.372	ENSGALG00000004711	-	85	57.372	Gallus_gallus
ENSCSAG00000017794	-	82	46.996	ENSGAFG00000013175	ptcd1	78	47.069	Gambusia_affinis
ENSCSAG00000017794	-	85	48.537	ENSGACG00000016607	ptcd1	84	49.195	Gasterosteus_aculeatus
ENSCSAG00000017794	-	95	55.022	ENSGAGG00000021832	-	99	55.322	Gopherus_agassizii
ENSCSAG00000017794	-	95	93.760	ENSGGOG00000015123	-	91	93.916	Gorilla_gorilla
ENSCSAG00000017794	-	82	48.485	ENSHBUG00000018275	ptcd1	76	48.393	Haplochromis_burtoni
ENSCSAG00000017794	-	95	76.471	ENSHGLG00000017621	-	91	76.316	Heterocephalus_glaber_female
ENSCSAG00000017794	-	95	76.471	ENSHGLG00100007218	-	91	76.316	Heterocephalus_glaber_male
ENSCSAG00000017794	-	82	47.662	ENSHCOG00000010784	ptcd1	77	47.464	Hippocampus_comes
ENSCSAG00000017794	-	95	74.119	ENSSTOG00000001682	-	92	73.660	Ictidomys_tridecemlineatus
ENSCSAG00000017794	-	95	74.574	ENSJJAG00000000319	Ptcd1	91	74.264	Jaculus_jaculus
ENSCSAG00000017794	-	83	47.611	ENSKMAG00000008708	ptcd1	77	47.764	Kryptolebias_marmoratus
ENSCSAG00000017794	-	83	48.601	ENSLBEG00000008061	ptcd1	76	49.030	Labrus_bergylta
ENSCSAG00000017794	-	84	57.958	ENSLACG00000011172	ptcd1	78	58.615	Latimeria_chalumnae
ENSCSAG00000017794	-	84	53.963	ENSLOCG00000004833	ptcd1	87	54.204	Lepisosteus_oculatus
ENSCSAG00000017794	-	95	70.948	ENSLAFG00000002588	-	92	70.489	Loxodonta_africana
ENSCSAG00000017794	-	95	97.660	ENSMFAG00000041324	-	91	97.660	Macaca_fascicularis
ENSCSAG00000017794	-	95	97.348	ENSMMUG00000030408	-	91	97.348	Macaca_mulatta
ENSCSAG00000017794	-	95	97.660	ENSMNEG00000043786	-	91	97.660	Macaca_nemestrina
ENSCSAG00000017794	-	95	73.011	ENSMLEG00000031179	-	90	75.351	Mandrillus_leucophaeus
ENSCSAG00000017794	-	88	48.908	ENSMAMG00000007623	ptcd1	76	50.000	Mastacembelus_armatus
ENSCSAG00000017794	-	82	48.485	ENSMZEG00005012722	ptcd1	76	48.393	Maylandia_zebra
ENSCSAG00000017794	-	95	55.775	ENSMGAG00000004211	-	85	56.079	Meleagris_gallopavo
ENSCSAG00000017794	-	95	77.692	ENSMICG00000017428	-	91	77.573	Microcebus_murinus
ENSCSAG00000017794	-	83	47.711	ENSMMOG00000020243	ptcd1	83	47.943	Mola_mola
ENSCSAG00000017794	-	95	58.050	ENSMODG00000001350	-	92	58.050	Monodelphis_domestica
ENSCSAG00000017794	-	83	49.204	ENSMALG00000018442	ptcd1	76	49.020	Monopterus_albus
ENSCSAG00000017794	-	95	74.650	MGP_CAROLIEiJ_G0028011	Ptcd1	92	74.650	Mus_caroli
ENSCSAG00000017794	-	95	74.184	ENSMUSG00000029624	Ptcd1	92	74.184	Mus_musculus
ENSCSAG00000017794	-	95	74.650	MGP_PahariEiJ_G0024580	Ptcd1	92	74.650	Mus_pahari
ENSCSAG00000017794	-	95	74.339	MGP_SPRETEiJ_G0029012	Ptcd1	92	74.339	Mus_spretus
ENSCSAG00000017794	-	95	74.080	ENSMPUG00000016518	-	91	73.926	Mustela_putorius_furo
ENSCSAG00000017794	-	95	78.834	ENSMLUG00000010994	-	86	78.374	Myotis_lucifugus
ENSCSAG00000017794	-	85	48.370	ENSNBRG00000010079	ptcd1	79	49.110	Neolamprologus_brichardi
ENSCSAG00000017794	-	95	94.683	ENSNLEG00000011060	-	90	94.683	Nomascus_leucogenys
ENSCSAG00000017794	-	95	61.515	ENSMEUG00000006930	-	92	61.515	Notamacropus_eugenii
ENSCSAG00000017794	-	84	76.216	ENSOPRG00000013647	-	81	76.216	Ochotona_princeps
ENSCSAG00000017794	-	82	47.772	ENSONIG00000003168	ptcd1	90	47.679	Oreochromis_niloticus
ENSCSAG00000017794	-	84	58.201	ENSOANG00000007728	-	73	57.989	Ornithorhynchus_anatinus
ENSCSAG00000017794	-	95	72.573	ENSOCUG00000010584	-	90	71.957	Oryctolagus_cuniculus
ENSCSAG00000017794	-	82	49.195	ENSORLG00000009275	ptcd1	79	48.649	Oryzias_latipes
ENSCSAG00000017794	-	82	47.795	ENSORLG00020000988	ptcd1	79	47.425	Oryzias_latipes_hni
ENSCSAG00000017794	-	82	48.479	ENSORLG00015010557	ptcd1	79	47.928	Oryzias_latipes_hsok
ENSCSAG00000017794	-	82	48.301	ENSOMEG00000020627	ptcd1	81	48.108	Oryzias_melastigma
ENSCSAG00000017794	-	95	74.268	ENSOGAG00000010877	-	93	73.806	Otolemur_garnettii
ENSCSAG00000017794	-	95	71.517	ENSOARG00000018676	-	91	71.207	Ovis_aries
ENSCSAG00000017794	-	95	93.292	ENSPPAG00000036024	-	91	93.448	Pan_paniscus
ENSCSAG00000017794	-	95	76.006	ENSPPRG00000003478	-	91	75.697	Panthera_pardus
ENSCSAG00000017794	-	95	93.448	ENSPTRG00000019452	-	91	93.604	Pan_troglodytes
ENSCSAG00000017794	-	95	97.660	ENSPANG00000016730	-	91	97.660	Papio_anubis
ENSCSAG00000017794	-	93	48.281	ENSPKIG00000014215	ptcd1	89	48.336	Paramormyrops_kingsleyae
ENSCSAG00000017794	-	82	57.245	ENSPSIG00000011184	-	93	58.140	Pelodiscus_sinensis
ENSCSAG00000017794	-	74	40.275	ENSPMAG00000009667	ptcd1	95	40.637	Petromyzon_marinus
ENSCSAG00000017794	-	95	58.728	ENSPCIG00000024778	-	91	59.024	Phascolarctos_cinereus
ENSCSAG00000017794	-	82	46.221	ENSPFOG00000004458	ptcd1	77	46.643	Poecilia_formosa
ENSCSAG00000017794	-	82	46.561	ENSPLAG00000011051	ptcd1	78	46.986	Poecilia_latipinna
ENSCSAG00000017794	-	82	46.749	ENSPMEG00000020547	ptcd1	77	46.466	Poecilia_mexicana
ENSCSAG00000017794	-	82	46.235	ENSPREG00000000059	ptcd1	78	46.303	Poecilia_reticulata
ENSCSAG00000017794	-	89	93.698	ENSPPYG00000017377	-	91	93.698	Pongo_abelii
ENSCSAG00000017794	-	75	72.533	ENSPCAG00000001852	-	79	72.533	Procavia_capensis
ENSCSAG00000017794	-	95	78.825	ENSPCOG00000018596	-	92	78.549	Propithecus_coquereli
ENSCSAG00000017794	-	70	89.000	ENSPVAG00000007529	-	72	89.000	Pteropus_vampyrus
ENSCSAG00000017794	-	82	48.307	ENSPNYG00000019993	ptcd1	76	48.214	Pundamilia_nyererei
ENSCSAG00000017794	-	83	48.873	ENSPNAG00000014931	ptcd1	83	47.782	Pygocentrus_nattereri
ENSCSAG00000017794	-	95	74.339	ENSRNOG00000000987	Ptcd1	92	74.419	Rattus_norvegicus
ENSCSAG00000017794	-	95	95.944	ENSRBIG00000043393	-	91	95.944	Rhinopithecus_bieti
ENSCSAG00000017794	-	95	95.788	ENSRROG00000036420	-	91	95.788	Rhinopithecus_roxellana
ENSCSAG00000017794	-	95	89.580	ENSSBOG00000024114	-	91	89.425	Saimiri_boliviensis_boliviensis
ENSCSAG00000017794	-	95	56.721	ENSSHAG00000011376	-	92	57.312	Sarcophilus_harrisii
ENSCSAG00000017794	-	82	53.671	ENSSFOG00015007909	ptcd1	76	54.306	Scleropages_formosus
ENSCSAG00000017794	-	82	48.142	ENSSMAG00000000218	ptcd1	86	48.307	Scophthalmus_maximus
ENSCSAG00000017794	-	83	47.276	ENSSDUG00000015671	ptcd1	79	47.257	Seriola_dumerili
ENSCSAG00000017794	-	83	47.872	ENSSLDG00000014261	ptcd1	79	47.679	Seriola_lalandi_dorsalis
ENSCSAG00000017794	-	95	53.382	ENSSPUG00000003540	-	92	53.139	Sphenodon_punctatus
ENSCSAG00000017794	-	83	48.246	ENSSPAG00000011049	ptcd1	76	48.673	Stegastes_partitus
ENSCSAG00000017794	-	88	77.441	ENSSSCG00000007622	-	90	77.025	Sus_scrofa
ENSCSAG00000017794	-	83	60.670	ENSTGUG00000007563	-	90	61.649	Taeniopygia_guttata
ENSCSAG00000017794	-	82	48.135	ENSTRUG00000013471	ptcd1	75	48.214	Takifugu_rubripes
ENSCSAG00000017794	-	86	47.341	ENSTNIG00000008271	ptcd1	79	48.658	Tetraodon_nigroviridis
ENSCSAG00000017794	-	95	74.006	ENSTBEG00000011021	-	91	73.547	Tupaia_belangeri
ENSCSAG00000017794	-	95	74.419	ENSTTRG00000003006	-	91	74.264	Tursiops_truncatus
ENSCSAG00000017794	-	95	76.805	ENSUAMG00000008049	-	91	76.498	Ursus_americanus
ENSCSAG00000017794	-	95	75.659	ENSVVUG00000008836	-	91	75.349	Vulpes_vulpes
ENSCSAG00000017794	-	92	49.451	ENSXETG00000009891	ptcd1	80	52.878	Xenopus_tropicalis
ENSCSAG00000017794	-	82	48.393	ENSXMAG00000015540	ptcd1	77	48.654	Xiphophorus_maculatus