EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAG00000017795 (Gene tree)
Gene ID: 103246784
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 18246 bases
Position: chr28:13708247-13726492
Accession: 103246784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000013818	zf-CCCH	PF00642.24	2.2e-20	1	2
ENSCSAP00000013818	zf-CCCH	PF00642.24	2.2e-20	2	2
ENSCSAP00000013818	zf-CCHC	PF00098.23	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000015892	CPSF4-201	1818	XM_008018662	ENSCSAP00000013818	269 (aa)	XP_008016853	A0A0D9RYX9

Gene Model

Click here to download ENSCSAG00000017795's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03015	mRNA surveillance pathway	KEGG
csab05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000017795's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAG00000017795	CPSF4	61	67.879	ENSCSAG00000004429	CPSF4L	92	67.879

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000017795	CPSF4	100	100.000	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCSAG00000017795	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSCSAG00000017795	CPSF4	100	99.257	ENSAMEG00000006252	CPSF4	100	99.257	Ailuropoda_melanoleuca
ENSCSAG00000017795	CPSF4	100	78.810	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSCSAG00000017795	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSCSAG00000017795	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSCSAG00000017795	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSCSAG00000017795	CPSF4	100	93.680	ENSACAG00000012941	CPSF4	89	93.680	Anolis_carolinensis
ENSCSAG00000017795	CPSF4	100	100.000	ENSANAG00000021360	CPSF4	100	100.000	Aotus_nancymaae
ENSCSAG00000017795	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSCSAG00000017795	CPSF4	100	85.240	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSCSAG00000017795	CPSF4	100	89.591	ENSBTAG00000002090	CPSF4	100	89.591	Bos_taurus
ENSCSAG00000017795	CPSF4	100	100.000	ENSCJAG00000015826	CPSF4	100	100.000	Callithrix_jacchus
ENSCSAG00000017795	CPSF4	100	98.885	ENSCAFG00000015036	CPSF4	100	98.885	Canis_familiaris
ENSCSAG00000017795	CPSF4	100	92.565	ENSCAFG00020014462	CPSF4	100	92.565	Canis_lupus_dingo
ENSCSAG00000017795	CPSF4	100	99.257	ENSCHIG00000014313	CPSF4	100	99.257	Capra_hircus
ENSCSAG00000017795	CPSF4	100	81.852	ENSTSYG00000014604	-	100	79.259	Carlito_syrichta
ENSCSAG00000017795	CPSF4	100	89.963	ENSTSYG00000005712	-	100	89.963	Carlito_syrichta
ENSCSAG00000017795	CPSF4	89	82.573	ENSTSYG00000008195	-	99	79.600	Carlito_syrichta
ENSCSAG00000017795	CPSF4	81	99.083	ENSCAPG00000013881	CPSF4	87	99.083	Cavia_aperea
ENSCSAG00000017795	CPSF4	100	89.963	ENSCPOG00000001783	CPSF4	100	89.963	Cavia_porcellus
ENSCSAG00000017795	CPSF4	100	100.000	ENSCCAG00000028291	CPSF4	100	100.000	Cebus_capucinus
ENSCSAG00000017795	CPSF4	100	100.000	ENSCATG00000038440	CPSF4	100	100.000	Cercocebus_atys
ENSCSAG00000017795	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSCSAG00000017795	CPSF4	80	95.833	ENSCPBG00000020869	CPSF4	100	95.833	Chrysemys_picta_bellii
ENSCSAG00000017795	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSCSAG00000017795	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSCSAG00000017795	CPSF4	96	53.546	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSCSAG00000017795	CPSF4	100	100.000	ENSCANG00000019384	CPSF4	100	100.000	Colobus_angolensis_palliatus
ENSCSAG00000017795	CPSF4	100	89.963	ENSCGRG00001024184	Cpsf4	100	89.963	Cricetulus_griseus_chok1gshd
ENSCSAG00000017795	CPSF4	100	99.257	ENSCGRG00000013892	Cpsf4	100	99.257	Cricetulus_griseus_crigri
ENSCSAG00000017795	CPSF4	100	83.704	ENSCSEG00000019055	cpsf4	100	83.704	Cynoglossus_semilaevis
ENSCSAG00000017795	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSCSAG00000017795	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSCSAG00000017795	CPSF4	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSCSAG00000017795	CPSF4	81	98.618	ENSDORG00000000742	Cpsf4	100	98.618	Dipodomys_ordii
ENSCSAG00000017795	CPSF4	100	54.110	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSCSAG00000017795	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCSAG00000017795	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSCSAG00000017795	CPSF4	100	89.963	ENSEASG00005002487	CPSF4	100	89.963	Equus_asinus_asinus
ENSCSAG00000017795	CPSF4	100	99.257	ENSECAG00000007525	CPSF4	100	99.257	Equus_caballus
ENSCSAG00000017795	CPSF4	63	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSCSAG00000017795	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	82.847	Esox_lucius
ENSCSAG00000017795	CPSF4	100	99.257	ENSFCAG00000015070	CPSF4	100	99.257	Felis_catus
ENSCSAG00000017795	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSCSAG00000017795	CPSF4	100	86.245	ENSFALG00000013799	CPSF4	100	86.245	Ficedula_albicollis
ENSCSAG00000017795	CPSF4	90	98.354	ENSFDAG00000014092	CPSF4	100	98.354	Fukomys_damarensis
ENSCSAG00000017795	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSCSAG00000017795	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSCSAG00000017795	CPSF4	99	38.947	ENSGALG00000004441	-	92	37.895	Gallus_gallus
ENSCSAG00000017795	CPSF4	100	86.245	ENSGALG00000004714	CPSF4	100	85.130	Gallus_gallus
ENSCSAG00000017795	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSCSAG00000017795	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSCSAG00000017795	CPSF4	100	95.911	ENSGAGG00000021835	CPSF4	100	95.911	Gopherus_agassizii
ENSCSAG00000017795	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSCSAG00000017795	CPSF4	100	100.000	ENSGGOG00000015131	CPSF4	100	100.000	Gorilla_gorilla
ENSCSAG00000017795	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSCSAG00000017795	CPSF4	100	97.417	ENSHGLG00000017150	CPSF4	100	97.417	Heterocephalus_glaber_female
ENSCSAG00000017795	CPSF4	66	70.056	ENSHGLG00100017302	-	100	53.903	Heterocephalus_glaber_male
ENSCSAG00000017795	CPSF4	87	95.339	ENSHGLG00100009215	-	100	95.339	Heterocephalus_glaber_male
ENSCSAG00000017795	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSCSAG00000017795	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSCSAG00000017795	CPSF4	100	99.257	ENSSTOG00000001688	CPSF4	100	99.257	Ictidomys_tridecemlineatus
ENSCSAG00000017795	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSCSAG00000017795	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSCSAG00000017795	CPSF4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSCSAG00000017795	CPSF4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSCSAG00000017795	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSCSAG00000017795	CPSF4	100	98.885	ENSLAFG00000000159	CPSF4	100	98.885	Loxodonta_africana
ENSCSAG00000017795	CPSF4	100	100.000	ENSMFAG00000001462	CPSF4	100	100.000	Macaca_fascicularis
ENSCSAG00000017795	CPSF4	100	100.000	ENSMMUG00000019191	CPSF4	100	100.000	Macaca_mulatta
ENSCSAG00000017795	CPSF4	100	100.000	ENSMNEG00000032306	CPSF4	100	100.000	Macaca_nemestrina
ENSCSAG00000017795	CPSF4	100	100.000	ENSMLEG00000034721	CPSF4	100	100.000	Mandrillus_leucophaeus
ENSCSAG00000017795	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSCSAG00000017795	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSCSAG00000017795	CPSF4	87	84.681	ENSMGAG00000004235	CPSF4	100	83.404	Meleagris_gallopavo
ENSCSAG00000017795	CPSF4	100	99.257	ENSMAUG00000021253	Cpsf4	100	99.257	Mesocricetus_auratus
ENSCSAG00000017795	CPSF4	100	99.628	ENSMICG00000017429	CPSF4	100	99.628	Microcebus_murinus
ENSCSAG00000017795	CPSF4	100	99.257	ENSMOCG00000014901	Cpsf4	100	99.257	Microtus_ochrogaster
ENSCSAG00000017795	CPSF4	100	83.704	ENSMMOG00000001813	cpsf4	100	83.704	Mola_mola
ENSCSAG00000017795	CPSF4	100	97.770	ENSMODG00000001367	CPSF4	100	97.770	Monodelphis_domestica
ENSCSAG00000017795	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSCSAG00000017795	CPSF4	100	99.257	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.257	Mus_caroli
ENSCSAG00000017795	CPSF4	100	99.257	ENSMUSG00000029625	Cpsf4	100	99.257	Mus_musculus
ENSCSAG00000017795	CPSF4	100	99.257	MGP_PahariEiJ_G0024581	Cpsf4	100	99.257	Mus_pahari
ENSCSAG00000017795	CPSF4	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSCSAG00000017795	CPSF4	100	99.257	ENSMPUG00000016508	CPSF4	100	99.257	Mustela_putorius_furo
ENSCSAG00000017795	CPSF4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSCSAG00000017795	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSCSAG00000017795	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSCSAG00000017795	CPSF4	100	97.026	ENSNLEG00000011074	CPSF4	100	97.026	Nomascus_leucogenys
ENSCSAG00000017795	CPSF4	100	97.770	ENSMEUG00000006955	CPSF4	100	97.770	Notamacropus_eugenii
ENSCSAG00000017795	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSCSAG00000017795	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSCSAG00000017795	CPSF4	99	76.604	ENSODEG00000018283	-	91	73.962	Octodon_degus
ENSCSAG00000017795	CPSF4	100	99.257	ENSODEG00000011181	-	100	99.257	Octodon_degus
ENSCSAG00000017795	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSCSAG00000017795	CPSF4	100	53.957	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSCSAG00000017795	CPSF4	87	96.170	ENSOANG00000007729	CPSF4	100	96.170	Ornithorhynchus_anatinus
ENSCSAG00000017795	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSCSAG00000017795	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSCSAG00000017795	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSCSAG00000017795	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSCSAG00000017795	CPSF4	100	81.784	ENSOMEG00000005176	cpsf4	100	81.784	Oryzias_melastigma
ENSCSAG00000017795	CPSF4	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSCSAG00000017795	CPSF4	100	88.278	ENSOARG00000018668	CPSF4	100	87.912	Ovis_aries
ENSCSAG00000017795	CPSF4	100	99.628	ENSPPAG00000043355	CPSF4	100	99.628	Pan_paniscus
ENSCSAG00000017795	CPSF4	100	99.257	ENSPPRG00000003134	CPSF4	100	99.257	Panthera_pardus
ENSCSAG00000017795	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSCSAG00000017795	CPSF4	100	99.628	ENSPTRG00000019453	CPSF4	100	99.628	Pan_troglodytes
ENSCSAG00000017795	CPSF4	100	100.000	ENSPANG00000023123	CPSF4	100	100.000	Papio_anubis
ENSCSAG00000017795	CPSF4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSCSAG00000017795	CPSF4	80	95.370	ENSPSIG00000011229	CPSF4	100	95.370	Pelodiscus_sinensis
ENSCSAG00000017795	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSCSAG00000017795	CPSF4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSCSAG00000017795	CPSF4	100	99.257	ENSPEMG00000004508	Cpsf4	100	99.257	Peromyscus_maniculatus_bairdii
ENSCSAG00000017795	CPSF4	100	97.770	ENSPCIG00000024776	CPSF4	100	97.770	Phascolarctos_cinereus
ENSCSAG00000017795	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSCSAG00000017795	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSCSAG00000017795	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSCSAG00000017795	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSCSAG00000017795	CPSF4	87	99.145	ENSPPYG00000017378	CPSF4	100	99.145	Pongo_abelii
ENSCSAG00000017795	CPSF4	100	98.141	ENSPCAG00000001892	CPSF4	100	98.141	Procavia_capensis
ENSCSAG00000017795	CPSF4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSCSAG00000017795	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSCSAG00000017795	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSCSAG00000017795	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSCSAG00000017795	CPSF4	100	89.591	ENSRNOG00000000985	Cpsf4	100	89.591	Rattus_norvegicus
ENSCSAG00000017795	CPSF4	87	100.000	ENSRBIG00000033886	CPSF4	100	100.000	Rhinopithecus_bieti
ENSCSAG00000017795	CPSF4	100	90.706	ENSRROG00000040431	CPSF4	100	90.706	Rhinopithecus_roxellana
ENSCSAG00000017795	CPSF4	100	100.000	ENSSBOG00000020493	CPSF4	100	100.000	Saimiri_boliviensis_boliviensis
ENSCSAG00000017795	CPSF4	100	97.770	ENSSHAG00000011533	CPSF4	100	97.770	Sarcophilus_harrisii
ENSCSAG00000017795	CPSF4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSCSAG00000017795	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSCSAG00000017795	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSCSAG00000017795	CPSF4	100	84.074	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSCSAG00000017795	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSCSAG00000017795	CPSF4	100	94.424	ENSSPUG00000003549	CPSF4	100	94.424	Sphenodon_punctatus
ENSCSAG00000017795	CPSF4	96	59.615	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSCSAG00000017795	CPSF4	100	79.182	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSCSAG00000017795	CPSF4	100	90.335	ENSSSCG00000026896	CPSF4	100	90.335	Sus_scrofa
ENSCSAG00000017795	CPSF4	100	85.240	ENSTGUG00000007552	CPSF4	100	83.764	Taeniopygia_guttata
ENSCSAG00000017795	CPSF4	100	81.111	ENSTRUG00000024220	cpsf4	100	81.111	Takifugu_rubripes
ENSCSAG00000017795	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSCSAG00000017795	CPSF4	87	90.171	ENSTBEG00000011406	CPSF4	100	90.171	Tupaia_belangeri
ENSCSAG00000017795	CPSF4	100	78.810	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSCSAG00000017795	CPSF4	92	88.664	ENSUAMG00000008051	CPSF4	85	88.664	Ursus_americanus
ENSCSAG00000017795	CPSF4	100	89.591	ENSUMAG00000009474	CPSF4	100	89.591	Ursus_maritimus
ENSCSAG00000017795	CPSF4	100	89.591	ENSVVUG00000008824	CPSF4	100	89.591	Vulpes_vulpes
ENSCSAG00000017795	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSCSAG00000017795	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSCSAG00000017795	CPSF4	100	81.852	ENSXCOG00000016040	cpsf4	100	81.852	Xiphophorus_couchianus
ENSCSAG00000017795	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus