EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSAG00000018348 (Gene tree)
Gene ID: 103247343
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Chlorocebus_sabaeus
Status: putative
Strand: Minus strand
Length: 23025 bases
Position: chrKE148108.1:1308577-1331601
Accession: 103247343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAP00000014356	Smg4_UPF3	PF03467.15	4.1e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAT00000016447	UPF3B-201	1452	-	ENSCSAP00000014356	483 (aa)	XP_008017626	A0A0D9S0G7

Gene Model

Click here to download ENSCSAG00000018348's gene model file

Pathways

Pathway ID	Pathway Name	Source
csab03013	RNA transport	KEGG
csab03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAG00000018348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAG00000018348	UPF3B	100	100.000	ENSG00000125351	UPF3B	100	100.000	Homo_sapiens
ENSCSAG00000018348	UPF3B	100	55.263	ENSAPOG00000012775	upf3b	68	60.641	Acanthochromis_polyacanthus
ENSCSAG00000018348	UPF3B	100	95.859	ENSAMEG00000000163	UPF3B	100	95.859	Ailuropoda_melanoleuca
ENSCSAG00000018348	UPF3B	100	50.400	ENSACIG00000013582	upf3b	63	57.585	Amphilophus_citrinellus
ENSCSAG00000018348	UPF3B	100	53.846	ENSAOCG00000000706	upf3b	64	61.180	Amphiprion_ocellaris
ENSCSAG00000018348	UPF3B	100	55.263	ENSAPEG00000005545	upf3b	100	51.515	Amphiprion_percula
ENSCSAG00000018348	UPF3B	97	55.649	ENSATEG00000018742	upf3b	95	53.958	Anabas_testudineus
ENSCSAG00000018348	UPF3B	91	68.304	ENSACAG00000003625	UPF3B	99	65.440	Anolis_carolinensis
ENSCSAG00000018348	UPF3B	100	97.930	ENSANAG00000021894	-	100	98.885	Aotus_nancymaae
ENSCSAG00000018348	UPF3B	56	72.119	ENSANAG00000033169	-	93	71.375	Aotus_nancymaae
ENSCSAG00000018348	UPF3B	100	90.683	ENSANAG00000025598	-	100	92.593	Aotus_nancymaae
ENSCSAG00000018348	UPF3B	96	55.696	ENSACLG00000001649	upf3b	63	63.125	Astatotilapia_calliptera
ENSCSAG00000018348	UPF3B	56	60.071	ENSAMXG00000000199	upf3b	88	58.156	Astyanax_mexicanus
ENSCSAG00000018348	UPF3B	67	98.141	ENSBTAG00000035615	UPF3B	100	98.141	Bos_taurus
ENSCSAG00000018348	UPF3B	100	97.930	ENSCJAG00000004975	UPF3B	100	98.885	Callithrix_jacchus
ENSCSAG00000018348	UPF3B	100	95.031	ENSCAFG00000018426	UPF3B	100	94.410	Canis_familiaris
ENSCSAG00000018348	UPF3B	100	90.062	ENSCAFG00020004074	UPF3B	100	89.441	Canis_lupus_dingo
ENSCSAG00000018348	UPF3B	98	95.339	ENSCHIG00000018011	-	100	97.770	Capra_hircus
ENSCSAG00000018348	UPF3B	91	62.785	ENSCHIG00000011454	-	92	61.187	Capra_hircus
ENSCSAG00000018348	UPF3B	100	95.859	ENSCHIG00000000247	-	100	95.859	Capra_hircus
ENSCSAG00000018348	UPF3B	100	92.754	ENSTSYG00000014690	UPF3B	100	94.700	Carlito_syrichta
ENSCSAG00000018348	UPF3B	99	59.252	ENSCCAG00000029813	-	97	71.111	Cebus_capucinus
ENSCSAG00000018348	UPF3B	70	76.056	ENSCCAG00000021964	-	100	76.056	Cebus_capucinus
ENSCSAG00000018348	UPF3B	100	99.793	ENSCATG00000017506	UPF3B	100	100.000	Cercocebus_atys
ENSCSAG00000018348	UPF3B	100	89.441	ENSCLAG00000003260	UPF3B	100	89.441	Chinchilla_lanigera
ENSCSAG00000018348	UPF3B	99	64.358	ENSCPBG00000020685	UPF3B	93	66.592	Chrysemys_picta_bellii
ENSCSAG00000018348	UPF3B	70	100.000	ENSCANG00000029220	UPF3B	100	100.000	Colobus_angolensis_palliatus
ENSCSAG00000018348	UPF3B	75	80.220	ENSCGRG00001013643	-	89	78.006	Cricetulus_griseus_chok1gshd
ENSCSAG00000018348	UPF3B	100	80.825	ENSCGRG00001006858	-	100	81.031	Cricetulus_griseus_chok1gshd
ENSCSAG00000018348	UPF3B	89	82.448	ENSCGRG00000007627	Upf3b	100	82.679	Cricetulus_griseus_crigri
ENSCSAG00000018348	UPF3B	93	55.195	ENSCSEG00000002046	upf3b	66	57.971	Cynoglossus_semilaevis
ENSCSAG00000018348	UPF3B	98	53.388	ENSCVAG00000005030	upf3b	99	49.794	Cyprinodon_variegatus
ENSCSAG00000018348	UPF3B	98	55.350	ENSDARG00000000489	upf3b	97	55.556	Danio_rerio
ENSCSAG00000018348	UPF3B	100	94.617	ENSDNOG00000008665	UPF3B	100	94.617	Dasypus_novemcinctus
ENSCSAG00000018348	UPF3B	100	85.507	ENSDORG00000006077	Upf3b	100	84.886	Dipodomys_ordii
ENSCSAG00000018348	UPF3B	99	91.286	ENSEASG00005012919	UPF3B	100	91.286	Equus_asinus_asinus
ENSCSAG00000018348	UPF3B	99	91.286	ENSECAG00000016947	UPF3B	100	91.286	Equus_caballus
ENSCSAG00000018348	UPF3B	100	51.538	ENSELUG00000020389	upf3b	65	58.908	Esox_lucius
ENSCSAG00000018348	UPF3B	100	94.227	ENSFCAG00000004388	UPF3B	100	94.433	Felis_catus
ENSCSAG00000018348	UPF3B	99	65.619	ENSFALG00000001569	UPF3B	99	63.618	Ficedula_albicollis
ENSCSAG00000018348	UPF3B	100	90.683	ENSFDAG00000018869	UPF3B	100	90.683	Fukomys_damarensis
ENSCSAG00000018348	UPF3B	93	52.288	ENSFHEG00000017895	upf3b	63	60.759	Fundulus_heteroclitus
ENSCSAG00000018348	UPF3B	93	53.879	ENSGMOG00000001621	upf3b	61	61.000	Gadus_morhua
ENSCSAG00000018348	UPF3B	99	64.257	ENSGALG00000008618	UPF3B	99	67.276	Gallus_gallus
ENSCSAG00000018348	UPF3B	96	53.105	ENSGAFG00000000829	upf3b	96	53.586	Gambusia_affinis
ENSCSAG00000018348	UPF3B	92	54.705	ENSGACG00000017435	upf3b	94	66.912	Gasterosteus_aculeatus
ENSCSAG00000018348	UPF3B	99	66.599	ENSGAGG00000001219	UPF3B	99	65.854	Gopherus_agassizii
ENSCSAG00000018348	UPF3B	100	100.000	ENSGGOG00000023995	UPF3B	100	100.000	Gorilla_gorilla
ENSCSAG00000018348	UPF3B	96	55.696	ENSHBUG00000017393	upf3b	63	63.125	Haplochromis_burtoni
ENSCSAG00000018348	UPF3B	86	83.051	ENSHGLG00000011189	-	95	83.293	Heterocephalus_glaber_female
ENSCSAG00000018348	UPF3B	100	90.890	ENSHGLG00000019582	-	100	90.890	Heterocephalus_glaber_female
ENSCSAG00000018348	UPF3B	100	87.578	ENSHGLG00100002042	-	100	87.578	Heterocephalus_glaber_male
ENSCSAG00000018348	UPF3B	86	82.809	ENSHGLG00100001889	-	95	82.809	Heterocephalus_glaber_male
ENSCSAG00000018348	UPF3B	100	52.727	ENSHCOG00000017004	upf3b	93	53.348	Hippocampus_comes
ENSCSAG00000018348	UPF3B	97	54.792	ENSIPUG00000019249	upf3b	98	55.833	Ictalurus_punctatus
ENSCSAG00000018348	UPF3B	100	90.269	ENSSTOG00000001101	UPF3B	100	90.269	Ictidomys_tridecemlineatus
ENSCSAG00000018348	UPF3B	100	86.186	ENSJJAG00000000053	Upf3b	100	86.392	Jaculus_jaculus
ENSCSAG00000018348	UPF3B	96	54.430	ENSKMAG00000020300	upf3b	64	62.187	Kryptolebias_marmoratus
ENSCSAG00000018348	UPF3B	61	63.000	ENSLBEG00000028689	upf3b	59	62.667	Labrus_bergylta
ENSCSAG00000018348	UPF3B	100	57.600	ENSLACG00000008691	UPF3B	100	58.000	Latimeria_chalumnae
ENSCSAG00000018348	UPF3B	52	71.373	ENSLOCG00000015238	upf3b	92	60.000	Lepisosteus_oculatus
ENSCSAG00000018348	UPF3B	89	43.548	ENSLAFG00000023358	UPF3A	99	42.263	Loxodonta_africana
ENSCSAG00000018348	UPF3B	100	90.476	ENSLAFG00000001267	UPF3B	100	90.476	Loxodonta_africana
ENSCSAG00000018348	UPF3B	100	99.586	ENSMFAG00000045414	UPF3B	100	100.000	Macaca_fascicularis
ENSCSAG00000018348	UPF3B	100	99.586	ENSMMUG00000020222	UPF3B	100	100.000	Macaca_mulatta
ENSCSAG00000018348	UPF3B	100	99.586	ENSMNEG00000039794	UPF3B	100	100.000	Macaca_nemestrina
ENSCSAG00000018348	UPF3B	100	99.793	ENSMLEG00000010999	UPF3B	100	100.000	Mandrillus_leucophaeus
ENSCSAG00000018348	UPF3B	96	55.485	ENSMZEG00005007871	upf3b	63	63.125	Maylandia_zebra
ENSCSAG00000018348	UPF3B	81	65.602	ENSMGAG00000007728	UPF3B	99	68.080	Meleagris_gallopavo
ENSCSAG00000018348	UPF3B	86	48.724	ENSMGAG00000014837	UPF3A	98	43.192	Meleagris_gallopavo
ENSCSAG00000018348	UPF3B	100	84.124	ENSMAUG00000008705	Upf3b	100	84.330	Mesocricetus_auratus
ENSCSAG00000018348	UPF3B	70	97.407	ENSMICG00000001743	UPF3B	100	97.407	Microcebus_murinus
ENSCSAG00000018348	UPF3B	100	85.979	ENSMOCG00000017893	Upf3b	100	85.507	Microtus_ochrogaster
ENSCSAG00000018348	UPF3B	97	52.500	ENSMMOG00000004183	upf3b	96	53.263	Mola_mola
ENSCSAG00000018348	UPF3B	89	72.893	ENSMODG00000010232	UPF3B	99	72.374	Monodelphis_domestica
ENSCSAG00000018348	UPF3B	88	51.577	ENSMODG00000003159	UPF3A	96	50.679	Monodelphis_domestica
ENSCSAG00000018348	UPF3B	60	65.085	ENSMALG00000008042	upf3b	66	61.424	Monopterus_albus
ENSCSAG00000018348	UPF3B	100	82.474	MGP_CAROLIEiJ_G0032999	Upf3b	100	82.680	Mus_caroli
ENSCSAG00000018348	UPF3B	100	82.268	ENSMUSG00000036572	Upf3b	100	82.474	Mus_musculus
ENSCSAG00000018348	UPF3B	100	81.649	MGP_PahariEiJ_G0031543	Upf3b	100	81.856	Mus_pahari
ENSCSAG00000018348	UPF3B	100	82.268	MGP_SPRETEiJ_G0034152	Upf3b	100	82.474	Mus_spretus
ENSCSAG00000018348	UPF3B	98	92.161	ENSMPUG00000001531	UPF3B	100	91.525	Mustela_putorius_furo
ENSCSAG00000018348	UPF3B	100	91.925	ENSMLUG00000010821	UPF3B	100	91.925	Myotis_lucifugus
ENSCSAG00000018348	UPF3B	100	81.237	ENSNGAG00000008231	Upf3b	100	82.474	Nannospalax_galili
ENSCSAG00000018348	UPF3B	100	99.586	ENSNLEG00000014897	UPF3B	100	99.586	Nomascus_leucogenys
ENSCSAG00000018348	UPF3B	64	83.871	ENSMEUG00000015615	UPF3B	81	83.974	Notamacropus_eugenii
ENSCSAG00000018348	UPF3B	100	85.300	ENSODEG00000002186	-	100	85.093	Octodon_degus
ENSCSAG00000018348	UPF3B	100	56.250	ENSONIG00000002536	upf3b	100	53.024	Oreochromis_niloticus
ENSCSAG00000018348	UPF3B	89	64.237	ENSOANG00000002594	-	99	64.237	Ornithorhynchus_anatinus
ENSCSAG00000018348	UPF3B	100	95.031	ENSOCUG00000010213	UPF3B	100	95.031	Oryctolagus_cuniculus
ENSCSAG00000018348	UPF3B	94	55.269	ENSORLG00000001026	upf3b	94	54.701	Oryzias_latipes
ENSCSAG00000018348	UPF3B	94	54.624	ENSORLG00020003758	upf3b	94	54.043	Oryzias_latipes_hni
ENSCSAG00000018348	UPF3B	94	54.936	ENSORLG00015012954	upf3b	94	54.371	Oryzias_latipes_hsok
ENSCSAG00000018348	UPF3B	89	55.455	ENSOMEG00000014736	upf3b	62	60.870	Oryzias_melastigma
ENSCSAG00000018348	UPF3B	98	79.281	ENSOGAG00000033003	-	100	79.704	Otolemur_garnettii
ENSCSAG00000018348	UPF3B	100	92.547	ENSOGAG00000004643	-	100	92.547	Otolemur_garnettii
ENSCSAG00000018348	UPF3B	90	67.890	ENSOARG00000007869	-	99	64.908	Ovis_aries
ENSCSAG00000018348	UPF3B	100	95.267	ENSOARG00000016051	-	100	95.267	Ovis_aries
ENSCSAG00000018348	UPF3B	100	100.000	ENSPPAG00000040390	UPF3B	100	100.000	Pan_paniscus
ENSCSAG00000018348	UPF3B	100	95.238	ENSPPRG00000023536	UPF3B	100	95.238	Panthera_pardus
ENSCSAG00000018348	UPF3B	100	90.946	ENSPTIG00000015264	UPF3B	100	91.751	Panthera_tigris_altaica
ENSCSAG00000018348	UPF3B	100	100.000	ENSPTRG00000022228	UPF3B	100	100.000	Pan_troglodytes
ENSCSAG00000018348	UPF3B	100	99.793	ENSPANG00000000900	UPF3B	100	100.000	Papio_anubis
ENSCSAG00000018348	UPF3B	100	52.811	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSCSAG00000018348	UPF3B	86	51.474	ENSPSIG00000007468	UPF3A	99	50.685	Pelodiscus_sinensis
ENSCSAG00000018348	UPF3B	56	71.636	ENSPSIG00000005833	UPF3B	85	72.727	Pelodiscus_sinensis
ENSCSAG00000018348	UPF3B	56	67.033	ENSPMGG00000016067	upf3b	86	72.881	Periophthalmus_magnuspinnatus
ENSCSAG00000018348	UPF3B	100	86.626	ENSPEMG00000012352	Upf3b	100	86.831	Peromyscus_maniculatus_bairdii
ENSCSAG00000018348	UPF3B	72	57.018	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSCSAG00000018348	UPF3B	93	68.860	ENSPCIG00000028914	UPF3B	92	66.962	Phascolarctos_cinereus
ENSCSAG00000018348	UPF3B	96	54.604	ENSPLAG00000019922	upf3b	96	55.063	Poecilia_latipinna
ENSCSAG00000018348	UPF3B	96	54.604	ENSPLAG00000005105	upf3b	96	55.063	Poecilia_latipinna
ENSCSAG00000018348	UPF3B	50	68.354	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSCSAG00000018348	UPF3B	96	54.818	ENSPMEG00000023532	upf3b	96	55.063	Poecilia_mexicana
ENSCSAG00000018348	UPF3B	69	100.000	ENSPPYG00000020675	-	100	100.000	Pongo_abelii
ENSCSAG00000018348	UPF3B	100	92.547	ENSPCAG00000009464	UPF3B	100	92.547	Procavia_capensis
ENSCSAG00000018348	UPF3B	100	95.868	ENSPCOG00000021960	UPF3B	100	98.148	Propithecus_coquereli
ENSCSAG00000018348	UPF3B	100	81.573	ENSPVAG00000014075	UPF3B	100	81.573	Pteropus_vampyrus
ENSCSAG00000018348	UPF3B	96	55.202	ENSPNYG00000009846	upf3b	64	63.125	Pundamilia_nyererei
ENSCSAG00000018348	UPF3B	97	54.639	ENSPNAG00000021528	upf3b	96	65.934	Pygocentrus_nattereri
ENSCSAG00000018348	UPF3B	100	85.567	ENSRNOG00000039994	Upf3b	100	85.773	Rattus_norvegicus
ENSCSAG00000018348	UPF3B	82	97.481	ENSRBIG00000037219	UPF3B	100	97.481	Rhinopithecus_bieti
ENSCSAG00000018348	UPF3B	100	100.000	ENSRROG00000041031	UPF3B	100	100.000	Rhinopithecus_roxellana
ENSCSAG00000018348	UPF3B	100	97.723	ENSSBOG00000019740	UPF3B	100	98.513	Saimiri_boliviensis_boliviensis
ENSCSAG00000018348	UPF3B	88	72.854	ENSSHAG00000008634	UPF3B	99	67.423	Sarcophilus_harrisii
ENSCSAG00000018348	UPF3B	88	50.790	ENSSHAG00000009895	UPF3A	98	49.887	Sarcophilus_harrisii
ENSCSAG00000018348	UPF3B	100	57.201	ENSSFOG00015005614	upf3b	100	54.472	Scleropages_formosus
ENSCSAG00000018348	UPF3B	93	54.721	ENSSMAG00000012913	upf3b	84	67.647	Scophthalmus_maximus
ENSCSAG00000018348	UPF3B	60	71.166	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSCSAG00000018348	UPF3B	96	49.474	ENSSDUG00000005682	upf3b	97	50.630	Seriola_dumerili
ENSCSAG00000018348	UPF3B	96	53.053	ENSSLDG00000003130	upf3b	97	50.840	Seriola_lalandi_dorsalis
ENSCSAG00000018348	UPF3B	89	85.023	ENSSARG00000004147	UPF3B	100	84.562	Sorex_araneus
ENSCSAG00000018348	UPF3B	99	64.919	ENSSPUG00000013082	UPF3B	99	63.105	Sphenodon_punctatus
ENSCSAG00000018348	UPF3B	96	54.565	ENSSPAG00000009989	upf3b	96	52.008	Stegastes_partitus
ENSCSAG00000018348	UPF3B	100	92.340	ENSSSCG00000012617	UPF3B	100	92.340	Sus_scrofa
ENSCSAG00000018348	UPF3B	84	53.571	ENSTGUG00000009493	UPF3A	99	52.632	Taeniopygia_guttata
ENSCSAG00000018348	UPF3B	89	68.409	ENSTGUG00000003413	UPF3B	99	68.636	Taeniopygia_guttata
ENSCSAG00000018348	UPF3B	88	55.116	ENSTRUG00000010645	upf3b	61	66.421	Takifugu_rubripes
ENSCSAG00000018348	UPF3B	100	79.089	ENSTBEG00000003229	UPF3B	100	79.089	Tupaia_belangeri
ENSCSAG00000018348	UPF3B	100	88.866	ENSUAMG00000024565	UPF3B	100	89.485	Ursus_americanus
ENSCSAG00000018348	UPF3B	93	84.277	ENSUMAG00000002150	UPF3B	99	80.632	Ursus_maritimus
ENSCSAG00000018348	UPF3B	85	95.610	ENSVPAG00000009971	UPF3B	100	95.610	Vicugna_pacos
ENSCSAG00000018348	UPF3B	100	90.062	ENSVVUG00000011594	UPF3B	97	96.635	Vulpes_vulpes
ENSCSAG00000018348	UPF3B	87	55.427	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSCSAG00000018348	UPF3B	98	51.760	ENSXCOG00000016586	upf3b	97	65.403	Xiphophorus_couchianus
ENSCSAG00000018348	UPF3B	93	55.263	ENSXMAG00000013680	upf3b	94	55.022	Xiphophorus_maculatus