EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000000161 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 1497 bases
Position: chrreftig_23:940653-942149
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000000294	RRM_1	PF00076.22	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000000297	-	1497	-	ENSCSAVP00000000294	499 (aa)	-	H2Y4P6

Gene Model

Click here to download ENSCSAVG00000000161's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000000161's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000000161	-	70	52.023	ENSG00000111605	CPSF6	88	37.234	Homo_sapiens
ENSCSAVG00000000161	-	87	38.222	ENSG00000149532	CPSF7	89	59.048	Homo_sapiens
ENSCSAVG00000000161	-	56	63.780	ENSAMEG00000011781	CPSF6	56	52.448	Ailuropoda_melanoleuca
ENSCSAVG00000000161	-	54	43.103	ENSAOCG00000012357	CPSF7	68	44.643	Amphiprion_ocellaris
ENSCSAVG00000000161	-	53	43.478	ENSAPEG00000015375	CPSF7	68	44.643	Amphiprion_percula
ENSCSAVG00000000161	-	52	63.780	ENSANAG00000019240	CPSF6	54	57.746	Aotus_nancymaae
ENSCSAVG00000000161	-	93	36.082	ENSANAG00000024635	CPSF7	69	38.037	Aotus_nancymaae
ENSCSAVG00000000161	-	70	52.023	ENSBTAG00000007323	CPSF6	57	57.746	Bos_taurus
ENSCSAVG00000000161	-	87	38.222	ENSCJAG00000019282	CPSF7	84	59.048	Callithrix_jacchus
ENSCSAVG00000000161	-	56	67.769	ENSCJAG00000001798	CPSF6	57	57.746	Callithrix_jacchus
ENSCSAVG00000000161	-	52	63.780	ENSCAFG00000000424	CPSF6	53	57.746	Canis_familiaris
ENSCSAVG00000000161	-	87	38.444	ENSCAFG00000016152	CPSF7	54	32.963	Canis_familiaris
ENSCSAVG00000000161	-	70	52.023	ENSCAFG00020016950	CPSF6	57	57.746	Canis_lupus_dingo
ENSCSAVG00000000161	-	70	52.023	ENSCHIG00000010792	CPSF6	57	57.746	Capra_hircus
ENSCSAVG00000000161	-	52	67.769	ENSTSYG00000008591	CPSF6	53	57.746	Carlito_syrichta
ENSCSAVG00000000161	-	56	63.780	ENSCPOG00000015201	CPSF6	57	57.746	Cavia_porcellus
ENSCSAVG00000000161	-	56	67.769	ENSCCAG00000028149	CPSF6	57	57.746	Cebus_capucinus
ENSCSAVG00000000161	-	70	52.023	ENSCATG00000039288	CPSF6	57	57.746	Cercocebus_atys
ENSCSAVG00000000161	-	87	38.222	ENSCATG00000042801	CPSF7	56	33.333	Cercocebus_atys
ENSCSAVG00000000161	-	52	63.780	ENSCLAG00000010149	CPSF6	55	59.441	Chinchilla_lanigera
ENSCSAVG00000000161	-	87	35.394	ENSCSAG00000006414	CPSF7	56	33.333	Chlorocebus_sabaeus
ENSCSAVG00000000161	-	64	58.451	ENSCPBG00000013322	CPSF6	57	57.746	Chrysemys_picta_bellii
ENSCSAVG00000000161	-	52	63.780	ENSCANG00000037294	CPSF6	55	57.746	Colobus_angolensis_palliatus
ENSCSAVG00000000161	-	70	52.023	ENSCGRG00001018082	Cpsf6	57	59.441	Cricetulus_griseus_chok1gshd
ENSCSAVG00000000161	-	87	38.546	ENSCGRG00000017954	Cpsf7	53	34.274	Cricetulus_griseus_crigri
ENSCSAVG00000000161	-	52	63.780	ENSCGRG00000016909	Cpsf6	56	59.441	Cricetulus_griseus_crigri
ENSCSAVG00000000161	-	85	37.705	ENSCSEG00000001956	CPSF7	76	36.628	Cynoglossus_semilaevis
ENSCSAVG00000000161	-	75	50.000	ENSCVAG00000014857	cpsf6	53	46.531	Cyprinodon_variegatus
ENSCSAVG00000000161	-	87	38.444	ENSDNOG00000018517	CPSF7	84	60.000	Dasypus_novemcinctus
ENSCSAVG00000000161	-	55	62.687	ENSDNOG00000015292	CPSF6	57	59.441	Dasypus_novemcinctus
ENSCSAVG00000000161	-	52	63.780	ENSDORG00000002950	Cpsf6	54	59.441	Dipodomys_ordii
ENSCSAVG00000000161	-	70	52.023	ENSEASG00005008066	CPSF6	57	57.746	Equus_asinus_asinus
ENSCSAVG00000000161	-	76	45.977	ENSECAG00000018521	CPSF7	84	60.000	Equus_caballus
ENSCSAVG00000000161	-	70	52.023	ENSECAG00000015988	CPSF6	57	57.746	Equus_caballus
ENSCSAVG00000000161	-	57	49.296	ENSEEUG00000005966	-	65	60.952	Erinaceus_europaeus
ENSCSAVG00000000161	-	70	52.023	ENSFCAG00000002855	CPSF6	57	57.746	Felis_catus
ENSCSAVG00000000161	-	87	38.444	ENSFCAG00000013677	CPSF7	84	60.000	Felis_catus
ENSCSAVG00000000161	-	55	53.077	ENSFALG00000011927	CPSF7	64	58.559	Ficedula_albicollis
ENSCSAVG00000000161	-	55	62.687	ENSFALG00000010157	CPSF6	55	59.441	Ficedula_albicollis
ENSCSAVG00000000161	-	53	63.780	ENSFDAG00000002281	CPSF6	53	57.746	Fukomys_damarensis
ENSCSAVG00000000161	-	64	58.451	ENSGAGG00000010228	CPSF6	57	57.746	Gopherus_agassizii
ENSCSAVG00000000161	-	56	67.769	ENSGGOG00000008211	CPSF6	57	59.441	Gorilla_gorilla
ENSCSAVG00000000161	-	56	63.780	ENSHGLG00000000792	CPSF6	57	57.746	Heterocephalus_glaber_female
ENSCSAVG00000000161	-	87	35.332	ENSHGLG00000019090	-	56	33.333	Heterocephalus_glaber_female
ENSCSAVG00000000161	-	53	63.158	ENSHGLG00100013861	CPSF6	56	57.746	Heterocephalus_glaber_male
ENSCSAVG00000000161	-	54	63.780	ENSSTOG00000014133	CPSF6	55	59.441	Ictidomys_tridecemlineatus
ENSCSAVG00000000161	-	87	35.821	ENSJJAG00000019390	Cpsf7	56	33.333	Jaculus_jaculus
ENSCSAVG00000000161	-	52	63.780	ENSJJAG00000014647	Cpsf6	55	59.441	Jaculus_jaculus
ENSCSAVG00000000161	-	57	40.741	ENSLBEG00000000947	CPSF7	79	37.956	Labrus_bergylta
ENSCSAVG00000000161	-	58	61.194	ENSLOCG00000016190	cpsf6	54	58.042	Lepisosteus_oculatus
ENSCSAVG00000000161	-	70	52.023	ENSLAFG00000030413	CPSF6	57	57.746	Loxodonta_africana
ENSCSAVG00000000161	-	56	67.769	ENSMFAG00000045318	CPSF6	57	57.746	Macaca_fascicularis
ENSCSAVG00000000161	-	87	38.222	ENSMFAG00000001401	CPSF7	53	32.963	Macaca_fascicularis
ENSCSAVG00000000161	-	56	67.769	ENSMMUG00000002921	CPSF6	57	59.441	Macaca_mulatta
ENSCSAVG00000000161	-	87	38.222	ENSMMUG00000015280	CPSF7	56	33.333	Macaca_mulatta
ENSCSAVG00000000161	-	87	36.444	ENSMNEG00000029585	CPSF7	56	33.333	Macaca_nemestrina
ENSCSAVG00000000161	-	56	67.769	ENSMNEG00000036311	CPSF6	57	57.746	Macaca_nemestrina
ENSCSAVG00000000161	-	87	38.222	ENSMLEG00000031269	CPSF7	55	32.963	Mandrillus_leucophaeus
ENSCSAVG00000000161	-	52	63.780	ENSMLEG00000003957	CPSF6	55	57.746	Mandrillus_leucophaeus
ENSCSAVG00000000161	-	55	63.158	ENSMGAG00000010552	CPSF6	55	59.441	Meleagris_gallopavo
ENSCSAVG00000000161	-	70	52.023	ENSMAUG00000013240	Cpsf6	57	57.746	Mesocricetus_auratus
ENSCSAVG00000000161	-	70	52.023	ENSMICG00000007385	-	57	59.441	Microcebus_murinus
ENSCSAVG00000000161	-	70	52.023	ENSMOCG00000013982	Cpsf6	57	59.441	Microtus_ochrogaster
ENSCSAVG00000000161	-	70	52.023	ENSMODG00000007123	CPSF6	57	57.746	Monodelphis_domestica
ENSCSAVG00000000161	-	56	70.435	ENSMALG00000014908	cpsf6	61	80.247	Monopterus_albus
ENSCSAVG00000000161	-	70	52.023	MGP_CAROLIEiJ_G0015834	Cpsf6	57	59.441	Mus_caroli
ENSCSAVG00000000161	-	70	52.601	ENSMUSG00000055531	Cpsf6	57	59.441	Mus_musculus
ENSCSAVG00000000161	-	70	52.601	MGP_SPRETEiJ_G0016657	Cpsf6	57	59.441	Mus_spretus
ENSCSAVG00000000161	-	51	55.224	ENSMPUG00000017502	CPSF6	55	52.448	Mustela_putorius_furo
ENSCSAVG00000000161	-	51	55.224	ENSMLUG00000004172	-	52	52.448	Myotis_lucifugus
ENSCSAVG00000000161	-	87	35.394	ENSMLUG00000013278	CPSF7	56	33.333	Myotis_lucifugus
ENSCSAVG00000000161	-	66	65.289	ENSMLUG00000028728	-	74	80.000	Myotis_lucifugus
ENSCSAVG00000000161	-	70	52.023	ENSNGAG00000015901	Cpsf6	57	59.441	Nannospalax_galili
ENSCSAVG00000000161	-	56	67.769	ENSNLEG00000003798	CPSF6	57	57.746	Nomascus_leucogenys
ENSCSAVG00000000161	-	87	38.222	ENSNLEG00000002529	CPSF7	53	32.963	Nomascus_leucogenys
ENSCSAVG00000000161	-	52	67.769	ENSODEG00000004418	-	76	82.500	Octodon_degus
ENSCSAVG00000000161	-	87	37.778	ENSOCUG00000024726	CPSF7	60	59.048	Oryctolagus_cuniculus
ENSCSAVG00000000161	-	69	33.663	ENSOMEG00000000539	CPSF7	87	38.710	Oryzias_melastigma
ENSCSAVG00000000161	-	87	38.444	ENSOGAG00000027958	CPSF7	53	32.963	Otolemur_garnettii
ENSCSAVG00000000161	-	51	55.224	ENSOGAG00000031988	CPSF6	54	52.448	Otolemur_garnettii
ENSCSAVG00000000161	-	87	36.929	ENSOARG00000012937	CPSF7	54	59.048	Ovis_aries
ENSCSAVG00000000161	-	70	52.023	ENSPPRG00000021620	CPSF6	57	57.746	Panthera_pardus
ENSCSAVG00000000161	-	87	36.383	ENSPPRG00000008538	CPSF7	60	60.000	Panthera_pardus
ENSCSAVG00000000161	-	56	67.769	ENSPTRG00000005205	CPSF6	57	59.441	Pan_troglodytes
ENSCSAVG00000000161	-	61	63.846	ENSPANG00000011641	CPSF6	57	57.746	Papio_anubis
ENSCSAVG00000000161	-	87	38.222	ENSPANG00000006037	CPSF7	53	32.963	Papio_anubis
ENSCSAVG00000000161	-	54	50.427	ENSPKIG00000018054	CPSF7	74	49.138	Paramormyrops_kingsleyae
ENSCSAVG00000000161	-	87	38.444	ENSPEMG00000012648	Cpsf7	56	33.333	Peromyscus_maniculatus_bairdii
ENSCSAVG00000000161	-	52	63.780	ENSPEMG00000007973	Cpsf6	55	59.441	Peromyscus_maniculatus_bairdii
ENSCSAVG00000000161	-	57	69.421	ENSPMAG00000000657	cpsf6	52	81.013	Petromyzon_marinus
ENSCSAVG00000000161	-	70	52.023	ENSPCIG00000019063	CPSF6	57	57.746	Phascolarctos_cinereus
ENSCSAVG00000000161	-	70	52.023	ENSPPYG00000004756	CPSF6	57	57.746	Pongo_abelii
ENSCSAVG00000000161	-	56	67.769	ENSPCOG00000024384	CPSF6	57	59.441	Propithecus_coquereli
ENSCSAVG00000000161	-	70	52.023	ENSRNOG00000005927	Cpsf6	57	57.746	Rattus_norvegicus
ENSCSAVG00000000161	-	87	35.608	ENSRNOG00000020668	Cpsf7	56	34.100	Rattus_norvegicus
ENSCSAVG00000000161	-	87	38.222	ENSRBIG00000031429	CPSF7	84	59.048	Rhinopithecus_bieti
ENSCSAVG00000000161	-	56	67.769	ENSRBIG00000042827	CPSF6	57	59.441	Rhinopithecus_bieti
ENSCSAVG00000000161	-	87	38.222	ENSRROG00000045009	CPSF7	53	32.963	Rhinopithecus_roxellana
ENSCSAVG00000000161	-	56	63.780	ENSRROG00000042758	CPSF6	57	57.746	Rhinopithecus_roxellana
ENSCSAVG00000000161	-	52	67.769	ENSSBOG00000010652	CPSF6	50	63.208	Saimiri_boliviensis_boliviensis
ENSCSAVG00000000161	-	51	55.072	ENSSHAG00000006635	CPSF6	55	51.701	Sarcophilus_harrisii
ENSCSAVG00000000161	-	87	38.444	ENSSSCG00000013083	CPSF7	84	60.000	Sus_scrofa
ENSCSAVG00000000161	-	70	52.023	ENSSSCG00000038031	CPSF6	57	57.746	Sus_scrofa
ENSCSAVG00000000161	-	56	52.459	ENSTGUG00000006513	CPSF7	58	33.574	Taeniopygia_guttata
ENSCSAVG00000000161	-	87	35.608	ENSUMAG00000011825	CPSF7	56	33.333	Ursus_maritimus
ENSCSAVG00000000161	-	87	38.444	ENSVVUG00000004939	CPSF7	84	60.000	Vulpes_vulpes
ENSCSAVG00000000161	-	99	34.752	ENSXETG00000006715	cpsf7	55	42.373	Xenopus_tropicalis