EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000000326 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2710 bases
Position: chrreftig_145:260608-263317
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000000583	DND1_DSRM	PF14709.7	6.9e-23	1	1
ENSCSAVP00000000582	RRM_1	PF00076.22	1.4e-36	1	3
ENSCSAVP00000000582	RRM_1	PF00076.22	1.4e-36	2	3
ENSCSAVP00000000582	RRM_1	PF00076.22	1.4e-36	3	3
ENSCSAVP00000000583	RRM_1	PF00076.22	1.9e-36	1	3
ENSCSAVP00000000583	RRM_1	PF00076.22	1.9e-36	2	3
ENSCSAVP00000000583	RRM_1	PF00076.22	1.9e-36	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000000589	-	1527	-	ENSCSAVP00000000582	509 (aa)	-	H2Y5I4
ENSCSAVT00000000590	-	1647	-	ENSCSAVP00000000583	548 (aa)	-	H2Y5I5

Gene Model

Click here to download ENSCSAVG00000000326's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000000326's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000000326	-	93	50.097	ENSCSAVG00000009923	-	96	49.143
ENSCSAVG00000000326	-	61	50.955	ENSCSAVG00000008860	-	68	50.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000000326	-	92	48.881	ENSCING00000003864	-	84	48.881	Ciona_intestinalis
ENSCSAVG00000000326	-	99	84.670	ENSCING00000004101	-	98	84.670	Ciona_intestinalis
ENSCSAVG00000000326	-	55	41.009	ENSEBUG00000016408	-	74	41.009	Eptatretus_burgeri
ENSCSAVG00000000326	-	92	38.846	ENSEBUG00000015949	-	92	38.654	Eptatretus_burgeri