EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000000415 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2399 bases
Position: chrreftig_548:19207-21605
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000000738	MTS	PF05175.14	6.5e-05	1	1
ENSCSAVP00000000738	Met_10	PF02475.16	1.1e-35	1	1
ENSCSAVP00000000739	Met_10	PF02475.16	6.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000000747	-	552	-	ENSCSAVP00000000739	134 (aa)	-	H2Y5Z1
ENSCSAVT00000000746	-	867	-	ENSCSAVP00000000738	289 (aa)	-	H2Y5Z0

Gene Model

Click here to download ENSCSAVG00000000415's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000000415's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000000415	-	92	47.003	ENSG00000183665	TRMT12	71	47.003	Homo_sapiens
ENSCSAVG00000000415	-	97	48.852	ENSAPOG00000011979	trmt12	76	48.852	Acanthochromis_polyacanthus
ENSCSAVG00000000415	-	93	47.664	ENSAMEG00000019612	TRMT12	71	47.664	Ailuropoda_melanoleuca
ENSCSAVG00000000415	-	92	49.485	ENSACIG00000012982	trmt12	75	49.485	Amphilophus_citrinellus
ENSCSAVG00000000415	-	95	50.167	ENSAOCG00000020570	trmt12	78	50.167	Amphiprion_ocellaris
ENSCSAVG00000000415	-	92	51.379	ENSAPEG00000006335	trmt12	75	51.379	Amphiprion_percula
ENSCSAVG00000000415	-	92	48.639	ENSATEG00000018316	trmt12	72	48.639	Anabas_testudineus
ENSCSAVG00000000415	-	92	50.000	ENSACLG00000001008	trmt12	72	50.000	Astatotilapia_calliptera
ENSCSAVG00000000415	-	98	43.478	ENSAMXG00000040366	trmt12	78	42.857	Astyanax_mexicanus
ENSCSAVG00000000415	-	93	47.188	ENSBTAG00000020398	TRMT12	69	47.188	Bos_taurus
ENSCSAVG00000000415	-	92	47.003	ENSCJAG00000022174	TRMT12	71	47.003	Callithrix_jacchus
ENSCSAVG00000000415	-	93	45.483	ENSCAFG00000001040	TRMT12	73	45.483	Canis_familiaris
ENSCSAVG00000000415	-	93	45.483	ENSCAFG00020006500	TRMT12	73	45.483	Canis_lupus_dingo
ENSCSAVG00000000415	-	93	46.562	ENSCHIG00000016574	TRMT12	73	46.562	Capra_hircus
ENSCSAVG00000000415	-	93	45.283	ENSCPOG00000026520	TRMT12	72	45.283	Cavia_porcellus
ENSCSAVG00000000415	-	92	47.319	ENSCSAG00000018615	TRMT12	71	47.319	Chlorocebus_sabaeus
ENSCSAVG00000000415	-	84	57.143	ENSCPBG00000014290	TRMT12	54	71.429	Chrysemys_picta_bellii
ENSCSAVG00000000415	-	91	56.507	ENSCING00000019633	-	98	56.507	Ciona_intestinalis
ENSCSAVG00000000415	-	92	46.488	ENSCGRG00001014834	Trmt12	70	46.488	Cricetulus_griseus_chok1gshd
ENSCSAVG00000000415	-	97	46.226	ENSCSEG00000002675	trmt12	74	46.226	Cynoglossus_semilaevis
ENSCSAVG00000000415	-	91	49.310	ENSCVAG00000005590	trmt12	72	49.310	Cyprinodon_variegatus
ENSCSAVG00000000415	-	94	47.039	ENSDARG00000060338	trmt12	74	47.039	Danio_rerio
ENSCSAVG00000000415	-	92	44.479	ENSETEG00000009373	TRMT12	70	44.479	Echinops_telfairi
ENSCSAVG00000000415	-	93	46.106	ENSEASG00005022441	TRMT12	73	46.106	Equus_asinus_asinus
ENSCSAVG00000000415	-	92	46.032	ENSEEUG00000004844	TRMT12	71	46.032	Erinaceus_europaeus
ENSCSAVG00000000415	-	98	42.540	ENSELUG00000004240	trmt12	83	42.540	Esox_lucius
ENSCSAVG00000000415	-	79	43.885	ENSFALG00000003825	TRMT12	93	52.451	Ficedula_albicollis
ENSCSAVG00000000415	-	93	44.860	ENSFDAG00000016647	TRMT12	73	44.860	Fukomys_damarensis
ENSCSAVG00000000415	-	81	54.128	ENSFHEG00000017338	trmt12	74	39.796	Fundulus_heteroclitus
ENSCSAVG00000000415	-	94	43.438	ENSGALG00000006773	TRMT12	70	43.438	Gallus_gallus
ENSCSAVG00000000415	-	91	47.079	ENSGAFG00000020056	trmt12	72	47.079	Gambusia_affinis
ENSCSAVG00000000415	-	95	47.902	ENSGACG00000017351	trmt12	77	47.902	Gasterosteus_aculeatus
ENSCSAVG00000000415	-	92	49.485	ENSHBUG00000016412	trmt12	72	49.485	Haplochromis_burtoni
ENSCSAVG00000000415	-	93	45.171	ENSHGLG00000020498	TRMT12	73	45.171	Heterocephalus_glaber_female
ENSCSAVG00000000415	-	93	45.171	ENSHGLG00100020132	TRMT12	73	45.171	Heterocephalus_glaber_male
ENSCSAVG00000000415	-	95	45.847	ENSHCOG00000005050	trmt12	87	46.179	Hippocampus_comes
ENSCSAVG00000000415	-	92	48.000	ENSIPUG00000018011	trmt12	68	48.000	Ictalurus_punctatus
ENSCSAVG00000000415	-	92	45.110	ENSSTOG00000030617	TRMT12	72	45.110	Ictidomys_tridecemlineatus
ENSCSAVG00000000415	-	91	50.175	ENSKMAG00000000891	trmt12	72	50.175	Kryptolebias_marmoratus
ENSCSAVG00000000415	-	92	46.102	ENSLBEG00000028712	trmt12	74	46.102	Labrus_bergylta
ENSCSAVG00000000415	-	63	46.948	ENSLBEG00000017456	-	87	46.948	Labrus_bergylta
ENSCSAVG00000000415	-	97	66.667	ENSLACG00000015869	TRMT12	61	66.667	Latimeria_chalumnae
ENSCSAVG00000000415	-	92	50.407	ENSLOCG00000015290	trmt12	76	43.910	Lepisosteus_oculatus
ENSCSAVG00000000415	-	93	47.040	ENSLAFG00000012519	TRMT12	73	47.040	Loxodonta_africana
ENSCSAVG00000000415	-	92	47.003	ENSMMUG00000015490	TRMT12	71	47.003	Macaca_mulatta
ENSCSAVG00000000415	-	92	51.020	ENSMAMG00000020311	trmt12	73	51.020	Mastacembelus_armatus
ENSCSAVG00000000415	-	92	50.000	ENSMZEG00005007349	trmt12	72	50.000	Maylandia_zebra
ENSCSAVG00000000415	-	94	43.438	ENSMGAG00000004174	TRMT12	73	42.236	Meleagris_gallopavo
ENSCSAVG00000000415	-	92	47.279	ENSMMOG00000000412	trmt12	74	47.279	Mola_mola
ENSCSAVG00000000415	-	91	45.545	ENSMODG00000011798	-	64	45.545	Monodelphis_domestica
ENSCSAVG00000000415	-	92	46.405	ENSMODG00000021403	-	70	46.405	Monodelphis_domestica
ENSCSAVG00000000415	-	92	49.660	ENSMALG00000008668	trmt12	72	49.660	Monopterus_albus
ENSCSAVG00000000415	-	93	46.875	MGP_CAROLIEiJ_G0019820	Trmt12	72	46.875	Mus_caroli
ENSCSAVG00000000415	-	93	46.250	ENSMUSG00000037085	Trmt12	72	46.250	Mus_musculus
ENSCSAVG00000000415	-	93	47.188	MGP_PahariEiJ_G0019829	Trmt12	72	47.188	Mus_pahari
ENSCSAVG00000000415	-	93	45.938	MGP_SPRETEiJ_G0020717	Trmt12	72	45.938	Mus_spretus
ENSCSAVG00000000415	-	93	47.975	ENSMPUG00000019150	TRMT12	72	47.975	Mustela_putorius_furo
ENSCSAVG00000000415	-	93	45.794	ENSMLUG00000003753	TRMT12	73	45.794	Myotis_lucifugus
ENSCSAVG00000000415	-	95	44.172	ENSNGAG00000014548	Trmt12	74	44.172	Nannospalax_galili
ENSCSAVG00000000415	-	92	50.000	ENSNBRG00000021510	trmt12	73	50.000	Neolamprologus_brichardi
ENSCSAVG00000000415	-	89	56.109	ENSOPRG00000008067	TRMT12	58	56.109	Ochotona_princeps
ENSCSAVG00000000415	-	92	46.688	ENSODEG00000018933	TRMT12	72	46.688	Octodon_degus
ENSCSAVG00000000415	-	92	51.379	ENSONIG00000002614	trmt12	72	51.379	Oreochromis_niloticus
ENSCSAVG00000000415	-	91	44.013	ENSOANG00000009987	TRMT12	71	44.013	Ornithorhynchus_anatinus
ENSCSAVG00000000415	-	94	51.342	ENSORLG00000001280	trmt12	75	51.171	Oryzias_latipes
ENSCSAVG00000000415	-	94	51.342	ENSORLG00020000708	trmt12	75	51.171	Oryzias_latipes_hni
ENSCSAVG00000000415	-	94	51.007	ENSORLG00015012344	trmt12	75	50.836	Oryzias_latipes_hsok
ENSCSAVG00000000415	-	95	49.832	ENSOMEG00000015267	trmt12	74	49.832	Oryzias_melastigma
ENSCSAVG00000000415	-	92	46.855	ENSOGAG00000015845	TRMT12	72	46.855	Otolemur_garnettii
ENSCSAVG00000000415	-	100	45.522	ENSPKIG00000004640	trmt12	76	47.333	Paramormyrops_kingsleyae
ENSCSAVG00000000415	-	71	45.660	ENSPSIG00000003476	TRMT12	98	45.660	Pelodiscus_sinensis
ENSCSAVG00000000415	-	99	48.148	ENSPMGG00000016356	trmt12	71	51.020	Periophthalmus_magnuspinnatus
ENSCSAVG00000000415	-	93	45.928	ENSPCIG00000002967	TRMT12	65	45.928	Phascolarctos_cinereus
ENSCSAVG00000000415	-	91	47.619	ENSPFOG00000016931	trmt12	71	47.619	Poecilia_formosa
ENSCSAVG00000000415	-	91	47.782	ENSPLAG00000020621	trmt12	72	47.782	Poecilia_latipinna
ENSCSAVG00000000415	-	91	47.931	ENSPMEG00000000818	trmt12	72	47.931	Poecilia_mexicana
ENSCSAVG00000000415	-	91	47.931	ENSPREG00000011621	trmt12	73	48.805	Poecilia_reticulata
ENSCSAVG00000000415	-	92	47.003	ENSPPYG00000018866	TRMT12	71	47.003	Pongo_abelii
ENSCSAVG00000000415	-	84	53.571	ENSPCAG00000000556	TRMT12	50	57.207	Procavia_capensis
ENSCSAVG00000000415	-	92	47.003	ENSPVAG00000009149	TRMT12	71	47.003	Pteropus_vampyrus
ENSCSAVG00000000415	-	92	49.655	ENSPNYG00000010696	trmt12	75	49.655	Pundamilia_nyererei
ENSCSAVG00000000415	-	99	44.361	ENSPNAG00000019028	trmt12	76	43.827	Pygocentrus_nattereri
ENSCSAVG00000000415	-	93	47.500	ENSRNOG00000008978	Trmt12	73	47.500	Rattus_norvegicus
ENSCSAVG00000000415	-	91	46.205	ENSSHAG00000003345	TRMT12	69	46.205	Sarcophilus_harrisii
ENSCSAVG00000000415	-	92	46.535	ENSSFOG00015006090	trmt12	72	46.535	Scleropages_formosus
ENSCSAVG00000000415	-	92	48.649	ENSSMAG00000013247	trmt12	73	48.649	Scophthalmus_maximus
ENSCSAVG00000000415	-	95	47.697	ENSSDUG00000006168	trmt12	75	47.697	Seriola_dumerili
ENSCSAVG00000000415	-	95	48.026	ENSSLDG00000025007	trmt12	75	48.026	Seriola_lalandi_dorsalis
ENSCSAVG00000000415	-	81	51.915	ENSSPUG00000005321	TRMT12	51	51.915	Sphenodon_punctatus
ENSCSAVG00000000415	-	95	48.829	ENSSPAG00000009435	trmt12	72	48.829	Stegastes_partitus
ENSCSAVG00000000415	-	92	45.161	ENSTGUG00000002280	TRMT12	75	45.161	Taeniopygia_guttata
ENSCSAVG00000000415	-	98	46.945	ENSTRUG00000011548	trmt12	77	46.945	Takifugu_rubripes
ENSCSAVG00000000415	-	97	48.208	ENSTNIG00000016866	trmt12	75	48.208	Tetraodon_nigroviridis
ENSCSAVG00000000415	-	93	46.417	ENSUAMG00000002067	TRMT12	73	46.417	Ursus_americanus
ENSCSAVG00000000415	-	93	46.875	ENSVPAG00000006519	TRMT12	72	46.875	Vicugna_pacos
ENSCSAVG00000000415	-	93	45.483	ENSVVUG00000016790	TRMT12	72	45.483	Vulpes_vulpes
ENSCSAVG00000000415	-	93	50.690	ENSXETG00000009641	trmt12	69	50.690	Xenopus_tropicalis
ENSCSAVG00000000415	-	91	46.939	ENSXCOG00000016505	trmt12	77	46.939	Xiphophorus_couchianus
ENSCSAVG00000000415	-	91	47.619	ENSXMAG00000025318	trmt12	72	47.619	Xiphophorus_maculatus