EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000000472 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 3898 bases
Position: chrreftig_5:562156-566053
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000000829	RRM_1	PF00076.22	5.9e-36	1	2
ENSCSAVP00000000829	RRM_1	PF00076.22	5.9e-36	2	2
ENSCSAVP00000000832	RRM_1	PF00076.22	1.1e-35	1	2
ENSCSAVP00000000832	RRM_1	PF00076.22	1.1e-35	2	2
ENSCSAVP00000000830	RRM_1	PF00076.22	2.1e-35	1	2
ENSCSAVP00000000830	RRM_1	PF00076.22	2.1e-35	2	2
ENSCSAVP00000000831	RRM_1	PF00076.22	3.9e-35	1	2
ENSCSAVP00000000831	RRM_1	PF00076.22	3.9e-35	2	2
ENSCSAVP00000000828	RRM_1	PF00076.22	4.4e-35	1	2
ENSCSAVP00000000828	RRM_1	PF00076.22	4.4e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000000839	-	941	-	ENSCSAVP00000000830	288 (aa)	-	H2Y682
ENSCSAVT00000000838	-	792	-	ENSCSAVP00000000829	202 (aa)	-	H2Y681
ENSCSAVT00000000840	-	1093	-	ENSCSAVP00000000831	335 (aa)	-	H2Y683
ENSCSAVT00000000837	-	1789	-	ENSCSAVP00000000828	348 (aa)	-	H2Y680
ENSCSAVT00000000841	-	771	-	ENSCSAVP00000000832	247 (aa)	-	H2Y684

Gene Model

Click here to download ENSCSAVG00000000472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000000472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000000472	-	88	33.333	ENSCSAVG00000000188	-	61	33.929
ENSCSAVG00000000472	-	76	38.462	ENSCSAVG00000004935	-	71	35.294
ENSCSAVG00000000472	-	79	38.983	ENSCSAVG00000009321	-	56	39.655
ENSCSAVG00000000472	-	89	38.889	ENSCSAVG00000004457	-	91	38.889
ENSCSAVG00000000472	-	77	31.915	ENSCSAVG00000007809	-	72	31.915
ENSCSAVG00000000472	-	77	39.241	ENSCSAVG00000004946	-	79	40.000
ENSCSAVG00000000472	-	82	36.145	ENSCSAVG00000009774	-	69	35.526
ENSCSAVG00000000472	-	86	40.000	ENSCSAVG00000010397	-	61	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000000472	-	87	37.853	WBGene00019249	H28G03.1	62	36.000	Caenorhabditis_elegans
ENSCSAVG00000000472	-	98	69.189	ENSCING00000017374	-	56	69.189	Ciona_intestinalis
ENSCSAVG00000000472	-	99	89.894	ENSCING00000004062	-	82	72.792	Ciona_intestinalis
ENSCSAVG00000000472	-	87	44.000	ENSMMOG00000004241	-	86	44.000	Mola_mola
ENSCSAVG00000000472	-	88	44.944	ENSNBRG00000014522	-	81	43.716	Neolamprologus_brichardi
ENSCSAVG00000000472	-	87	42.857	ENSSLDG00000024705	-	82	41.530	Seriola_lalandi_dorsalis