EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000000613 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 6770 bases
Position: chrreftig_55:416920-423689
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000001103	MMR_HSR1	PF01926.23	1.7e-05	1	1
ENSCSAVP00000001106	MMR_HSR1	PF01926.23	2.2e-05	1	1
ENSCSAVP00000001104	MMR_HSR1	PF01926.23	2.6e-05	1	1
ENSCSAVP00000001105	MMR_HSR1	PF01926.23	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000001115	-	848	-	ENSCSAVP00000001104	222 (aa)	-	H2Y706
ENSCSAVT00000001114	-	751	-	ENSCSAVP00000001103	163 (aa)	-	H2Y705
ENSCSAVT00000001117	-	582	-	ENSCSAVP00000001106	186 (aa)	-	H2Y708
ENSCSAVT00000001116	-	753	-	ENSCSAVP00000001105	236 (aa)	-	H2Y707

Gene Model

Click here to download ENSCSAVG00000000613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000000613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000000613	-	85	40.580	ENSCSAVG00000001356	-	78	36.598
ENSCSAVG00000000613	-	87	34.524	ENSCSAVG00000002804	-	81	35.294
ENSCSAVG00000000613	-	88	44.828	ENSCSAVG00000010348	-	91	41.053
ENSCSAVG00000000613	-	85	30.542	ENSCSAVG00000005120	-	87	31.776
ENSCSAVG00000000613	-	90	30.769	ENSCSAVG00000009503	-	98	30.769
ENSCSAVG00000000613	-	73	40.336	ENSCSAVG00000006042	-	57	40.336
ENSCSAVG00000000613	-	87	36.620	ENSCSAVG00000010245	-	71	32.683
ENSCSAVG00000000613	-	83	32.484	ENSCSAVG00000005450	-	69	32.484
ENSCSAVG00000000613	-	90	32.536	ENSCSAVG00000005689	-	96	32.536
ENSCSAVG00000000613	-	87	42.593	ENSCSAVG00000000160	-	95	38.208
ENSCSAVG00000000613	-	85	42.143	ENSCSAVG00000008995	-	95	41.447
ENSCSAVG00000000613	-	87	40.816	ENSCSAVG00000011162	-	96	34.146
ENSCSAVG00000000613	-	87	46.584	ENSCSAVG00000009147	-	81	45.087
ENSCSAVG00000000613	-	87	44.366	ENSCSAVG00000009128	-	79	43.605
ENSCSAVG00000000613	-	87	42.553	ENSCSAVG00000002088	-	97	37.220
ENSCSAVG00000000613	-	88	40.606	ENSCSAVG00000008684	-	79	40.606
ENSCSAVG00000000613	-	88	32.335	ENSCSAVG00000007813	-	63	32.335

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000000613	-	99	83.333	ENSG00000108774	RAB5C	100	87.097	Homo_sapiens
ENSCSAVG00000000613	-	99	83.951	ENSAPOG00000016864	rab5c	99	76.106	Acanthochromis_polyacanthus
ENSCSAVG00000000613	-	99	83.333	ENSAMEG00000006003	RAB5C	99	75.000	Ailuropoda_melanoleuca
ENSCSAVG00000000613	-	99	83.951	ENSACIG00000010896	rab5c	99	75.664	Amphilophus_citrinellus
ENSCSAVG00000000613	-	99	83.951	ENSAOCG00000016614	rab5c	99	76.106	Amphiprion_ocellaris
ENSCSAVG00000000613	-	97	84.810	ENSAPEG00000017868	-	98	76.577	Amphiprion_percula
ENSCSAVG00000000613	-	99	84.568	ENSATEG00000001937	rab5c	100	75.771	Anabas_testudineus
ENSCSAVG00000000613	-	99	83.333	ENSANAG00000025390	RAB5C	100	76.667	Aotus_nancymaae
ENSCSAVG00000000613	-	99	83.951	ENSACLG00000002706	rab5c	99	75.556	Astatotilapia_calliptera
ENSCSAVG00000000613	-	94	84.416	ENSACLG00000008615	-	95	76.037	Astatotilapia_calliptera
ENSCSAVG00000000613	-	99	84.049	ENSAMXG00000043717	rab5c	99	75.221	Astyanax_mexicanus
ENSCSAVG00000000613	-	94	84.416	ENSAMXG00000037267	-	99	76.744	Astyanax_mexicanus
ENSCSAVG00000000613	-	99	83.951	ENSBTAG00000006982	RAB5C	99	75.455	Bos_taurus
ENSCSAVG00000000613	-	99	79.755	WBGene00004268	rab-5	99	70.588	Caenorhabditis_elegans
ENSCSAVG00000000613	-	99	83.333	ENSCAFG00000015629	RAB5C	99	75.000	Canis_familiaris
ENSCSAVG00000000613	-	99	83.333	ENSCAFG00020013537	RAB5C	99	75.000	Canis_lupus_dingo
ENSCSAVG00000000613	-	99	83.951	ENSCHIG00000012960	RAB5C	99	75.455	Capra_hircus
ENSCSAVG00000000613	-	99	83.333	ENSTSYG00000030531	RAB5C	99	75.000	Carlito_syrichta
ENSCSAVG00000000613	-	99	83.333	ENSCCAG00000025940	RAB5C	99	74.545	Cebus_capucinus
ENSCSAVG00000000613	-	99	83.333	ENSCATG00000040873	RAB5C	99	75.000	Cercocebus_atys
ENSCSAVG00000000613	-	99	83.951	ENSCLAG00000016650	RAB5C	99	75.000	Chinchilla_lanigera
ENSCSAVG00000000613	-	99	83.333	ENSCHOG00000009886	RAB5C	100	84.270	Choloepus_hoffmanni
ENSCSAVG00000000613	-	99	90.123	ENSCING00000003340	-	99	86.937	Ciona_intestinalis
ENSCSAVG00000000613	-	99	83.333	ENSCGRG00001014226	Rab5c	99	74.545	Cricetulus_griseus_chok1gshd
ENSCSAVG00000000613	-	99	83.333	ENSCGRG00000007534	Rab5c	99	74.545	Cricetulus_griseus_crigri
ENSCSAVG00000000613	-	99	84.568	ENSCSEG00000017024	rab5c	99	76.444	Cynoglossus_semilaevis
ENSCSAVG00000000613	-	99	83.333	ENSCVAG00000009550	rab5c	99	75.000	Cyprinodon_variegatus
ENSCSAVG00000000613	-	99	83.333	ENSDNOG00000038853	RAB5C	99	75.000	Dasypus_novemcinctus
ENSCSAVG00000000613	-	99	83.951	ENSDORG00000006819	Rab5c	99	75.455	Dipodomys_ordii
ENSCSAVG00000000613	-	99	81.988	FBgn0014010	Rab5	94	75.355	Drosophila_melanogaster
ENSCSAVG00000000613	-	99	80.864	ENSEBUG00000014794	rab5c	99	72.727	Eptatretus_burgeri
ENSCSAVG00000000613	-	99	83.333	ENSEASG00005009281	RAB5C	99	75.000	Equus_asinus_asinus
ENSCSAVG00000000613	-	99	83.333	ENSECAG00000025054	RAB5C	99	75.000	Equus_caballus
ENSCSAVG00000000613	-	99	82.716	ENSEEUG00000002790	RAB5C	99	74.545	Erinaceus_europaeus
ENSCSAVG00000000613	-	99	83.951	ENSELUG00000018516	rab5c	99	76.126	Esox_lucius
ENSCSAVG00000000613	-	99	82.716	ENSELUG00000010439	-	99	74.449	Esox_lucius
ENSCSAVG00000000613	-	99	83.951	ENSFCAG00000002148	RAB5C	99	75.455	Felis_catus
ENSCSAVG00000000613	-	99	83.333	ENSFDAG00000021541	RAB5C	99	74.667	Fukomys_damarensis
ENSCSAVG00000000613	-	99	83.951	ENSFHEG00000012117	rab5c	99	75.446	Fundulus_heteroclitus
ENSCSAVG00000000613	-	99	80.982	ENSFHEG00000015268	-	99	73.246	Fundulus_heteroclitus
ENSCSAVG00000000613	-	100	80.982	ENSGMOG00000001876	-	100	80.899	Gadus_morhua
ENSCSAVG00000000613	-	99	83.951	ENSGMOG00000015096	rab5c	99	75.664	Gadus_morhua
ENSCSAVG00000000613	-	99	80.368	ENSGAFG00000003642	-	99	71.930	Gambusia_affinis
ENSCSAVG00000000613	-	99	83.333	ENSGAFG00000000884	rab5c	99	75.446	Gambusia_affinis
ENSCSAVG00000000613	-	99	83.333	ENSGACG00000008659	rab5c	99	75.336	Gasterosteus_aculeatus
ENSCSAVG00000000613	-	99	83.333	ENSGGOG00000005472	RAB5C	99	75.000	Gorilla_gorilla
ENSCSAVG00000000613	-	99	83.951	ENSHBUG00000002014	rab5c	99	75.556	Haplochromis_burtoni
ENSCSAVG00000000613	-	94	84.416	ENSHBUG00000006823	-	95	76.037	Haplochromis_burtoni
ENSCSAVG00000000613	-	99	83.333	ENSHGLG00000012067	RAB5C	99	74.091	Heterocephalus_glaber_female
ENSCSAVG00000000613	-	99	83.436	ENSHCOG00000004662	rab5c	97	75.330	Hippocampus_comes
ENSCSAVG00000000613	-	89	86.207	ENSHCOG00000020238	-	90	76.214	Hippocampus_comes
ENSCSAVG00000000613	-	89	88.966	ENSIPUG00000020082	rab5c	99	74.336	Ictalurus_punctatus
ENSCSAVG00000000613	-	99	83.333	ENSSTOG00000006620	RAB5C	99	74.545	Ictidomys_tridecemlineatus
ENSCSAVG00000000613	-	99	83.333	ENSJJAG00000021181	Rab5c	99	75.000	Jaculus_jaculus
ENSCSAVG00000000613	-	99	82.822	ENSKMAG00000017417	-	95	76.256	Kryptolebias_marmoratus
ENSCSAVG00000000613	-	99	84.568	ENSKMAG00000020038	rab5c	99	76.106	Kryptolebias_marmoratus
ENSCSAVG00000000613	-	99	83.951	ENSLBEG00000004128	rab5c	99	76.000	Labrus_bergylta
ENSCSAVG00000000613	-	99	80.982	ENSLBEG00000010408	-	99	73.684	Labrus_bergylta
ENSCSAVG00000000613	-	99	83.333	ENSLOCG00000012566	rab5c	100	74.554	Lepisosteus_oculatus
ENSCSAVG00000000613	-	99	83.333	ENSMFAG00000039627	RAB5C	99	75.000	Macaca_fascicularis
ENSCSAVG00000000613	-	99	83.333	ENSMNEG00000000355	RAB5C	99	75.000	Macaca_nemestrina
ENSCSAVG00000000613	-	99	83.951	ENSMAMG00000022322	rab5c	99	75.446	Mastacembelus_armatus
ENSCSAVG00000000613	-	99	80.368	ENSMAMG00000016207	-	99	73.684	Mastacembelus_armatus
ENSCSAVG00000000613	-	99	83.951	ENSMZEG00005022735	rab5c	99	75.556	Maylandia_zebra
ENSCSAVG00000000613	-	94	84.416	ENSMZEG00005021090	-	95	76.037	Maylandia_zebra
ENSCSAVG00000000613	-	99	83.333	ENSMAUG00000015005	Rab5c	99	74.545	Mesocricetus_auratus
ENSCSAVG00000000613	-	99	83.333	ENSMICG00000041608	RAB5C	99	75.000	Microcebus_murinus
ENSCSAVG00000000613	-	99	83.333	ENSMOCG00000018531	-	99	74.545	Microtus_ochrogaster
ENSCSAVG00000000613	-	99	84.568	ENSMMOG00000020621	rab5c	99	76.889	Mola_mola
ENSCSAVG00000000613	-	99	80.982	ENSMALG00000022348	-	100	73.568	Monopterus_albus
ENSCSAVG00000000613	-	98	83.125	ENSMALG00000006052	rab5c	97	73.423	Monopterus_albus
ENSCSAVG00000000613	-	99	83.333	MGP_CAROLIEiJ_G0017184	Rab5c	99	74.545	Mus_caroli
ENSCSAVG00000000613	-	99	83.333	ENSMUSG00000019173	Rab5c	99	74.545	Mus_musculus
ENSCSAVG00000000613	-	99	83.333	MGP_PahariEiJ_G0018314	Rab5c	99	74.545	Mus_pahari
ENSCSAVG00000000613	-	99	83.333	MGP_SPRETEiJ_G0018027	Rab5c	99	74.545	Mus_spretus
ENSCSAVG00000000613	-	99	83.333	ENSMPUG00000010554	RAB5C	99	75.000	Mustela_putorius_furo
ENSCSAVG00000000613	-	99	83.951	ENSNGAG00000010286	Rab5c	99	75.455	Nannospalax_galili
ENSCSAVG00000000613	-	94	84.416	ENSNBRG00000016922	-	95	76.037	Neolamprologus_brichardi
ENSCSAVG00000000613	-	99	83.951	ENSNBRG00000018165	rab5c	99	75.556	Neolamprologus_brichardi
ENSCSAVG00000000613	-	89	86.897	ENSOPRG00000008255	RAB5C	100	79.775	Ochotona_princeps
ENSCSAVG00000000613	-	99	84.568	ENSODEG00000017920	RAB5C	99	75.455	Octodon_degus
ENSCSAVG00000000613	-	99	83.951	ENSONIG00000001113	rab5c	99	75.893	Oreochromis_niloticus
ENSCSAVG00000000613	-	99	83.951	ENSORLG00000003882	rab5c	100	75.330	Oryzias_latipes
ENSCSAVG00000000613	-	99	83.951	ENSORLG00020008388	rab5c	100	75.330	Oryzias_latipes_hni
ENSCSAVG00000000613	-	99	83.951	ENSORLG00015021900	rab5c	100	75.330	Oryzias_latipes_hsok
ENSCSAVG00000000613	-	99	83.951	ENSOMEG00000023078	rab5c	100	75.330	Oryzias_melastigma
ENSCSAVG00000000613	-	99	83.333	ENSOGAG00000009456	RAB5C	99	75.000	Otolemur_garnettii
ENSCSAVG00000000613	-	99	83.951	ENSOARG00000018768	RAB5C	99	75.455	Ovis_aries
ENSCSAVG00000000613	-	99	83.333	ENSPPAG00000037206	RAB5C	99	75.000	Pan_paniscus
ENSCSAVG00000000613	-	99	83.951	ENSPPRG00000005745	RAB5C	99	75.455	Panthera_pardus
ENSCSAVG00000000613	-	99	83.951	ENSPTIG00000008177	RAB5C	99	75.455	Panthera_tigris_altaica
ENSCSAVG00000000613	-	99	83.333	ENSPTRG00000009194	RAB5C	99	75.000	Pan_troglodytes
ENSCSAVG00000000613	-	99	83.333	ENSPKIG00000001237	-	99	75.556	Paramormyrops_kingsleyae
ENSCSAVG00000000613	-	99	85.802	ENSPKIG00000020112	-	99	76.000	Paramormyrops_kingsleyae
ENSCSAVG00000000613	-	99	81.481	ENSPMGG00000010792	rab5c	99	73.214	Periophthalmus_magnuspinnatus
ENSCSAVG00000000613	-	99	83.333	ENSPEMG00000017971	Rab5c	99	74.545	Peromyscus_maniculatus_bairdii
ENSCSAVG00000000613	-	99	82.036	ENSPMAG00000000008	rab5c	99	72.889	Petromyzon_marinus
ENSCSAVG00000000613	-	99	81.481	ENSPMAG00000007867	rab5c	99	71.818	Petromyzon_marinus
ENSCSAVG00000000613	-	99	80.864	ENSPMAG00000001399	rab5c	92	78.392	Petromyzon_marinus
ENSCSAVG00000000613	-	99	82.716	ENSPCIG00000020225	-	99	74.545	Phascolarctos_cinereus
ENSCSAVG00000000613	-	99	83.333	ENSPLAG00000004790	rab5c	99	75.446	Poecilia_latipinna
ENSCSAVG00000000613	-	99	80.982	ENSPLAG00000016333	-	99	73.128	Poecilia_latipinna
ENSCSAVG00000000613	-	99	81.595	ENSPMEG00000012614	-	99	73.568	Poecilia_mexicana
ENSCSAVG00000000613	-	99	83.333	ENSPMEG00000011336	rab5c	99	75.446	Poecilia_mexicana
ENSCSAVG00000000613	-	99	83.333	ENSPREG00000010146	rab5c	99	75.446	Poecilia_reticulata
ENSCSAVG00000000613	-	99	81.595	ENSPREG00000022167	-	95	76.733	Poecilia_reticulata
ENSCSAVG00000000613	-	99	83.333	ENSPPYG00000008398	RAB5C	99	75.000	Pongo_abelii
ENSCSAVG00000000613	-	99	82.716	ENSPCAG00000016412	RAB5C	99	75.556	Procavia_capensis
ENSCSAVG00000000613	-	99	83.951	ENSPCOG00000026327	RAB5C	99	75.455	Propithecus_coquereli
ENSCSAVG00000000613	-	99	83.333	ENSPVAG00000003867	RAB5C	99	75.000	Pteropus_vampyrus
ENSCSAVG00000000613	-	99	83.951	ENSPNYG00000010615	rab5c	99	75.556	Pundamilia_nyererei
ENSCSAVG00000000613	-	94	84.416	ENSPNYG00000015851	-	95	76.037	Pundamilia_nyererei
ENSCSAVG00000000613	-	99	84.663	ENSPNAG00000028138	rab5c	99	76.444	Pygocentrus_nattereri
ENSCSAVG00000000613	-	95	83.226	ENSPNAG00000002218	-	99	74.886	Pygocentrus_nattereri
ENSCSAVG00000000613	-	99	83.333	ENSRNOG00000018568	Rab5c	99	74.545	Rattus_norvegicus
ENSCSAVG00000000613	-	99	83.333	ENSRBIG00000031376	RAB5C	99	75.000	Rhinopithecus_bieti
ENSCSAVG00000000613	-	99	83.333	ENSRROG00000032895	RAB5C	99	75.000	Rhinopithecus_roxellana
ENSCSAVG00000000613	-	99	83.333	ENSSBOG00000032552	-	99	74.545	Saimiri_boliviensis_boliviensis
ENSCSAVG00000000613	-	99	82.716	ENSSHAG00000005267	-	99	74.545	Sarcophilus_harrisii
ENSCSAVG00000000613	-	99	79.630	ENSSFOG00015009988	-	98	72.072	Scleropages_formosus
ENSCSAVG00000000613	-	99	83.951	ENSSMAG00000007323	rab5c	99	76.889	Scophthalmus_maximus
ENSCSAVG00000000613	-	99	84.568	ENSSDUG00000023008	rab5c	99	76.889	Seriola_dumerili
ENSCSAVG00000000613	-	99	83.951	ENSSLDG00000017771	rab5c	99	76.444	Seriola_lalandi_dorsalis
ENSCSAVG00000000613	-	99	82.716	ENSSPUG00000012950	-	99	75.111	Sphenodon_punctatus
ENSCSAVG00000000613	-	99	84.568	ENSSPAG00000006436	rab5c	99	76.339	Stegastes_partitus
ENSCSAVG00000000613	-	99	83.951	ENSSSCG00000032467	RAB5C	99	75.455	Sus_scrofa
ENSCSAVG00000000613	-	99	84.568	ENSTRUG00000015590	rab5c	99	76.106	Takifugu_rubripes
ENSCSAVG00000000613	-	99	85.714	ENSTNIG00000011711	rab5c	97	77.578	Tetraodon_nigroviridis
ENSCSAVG00000000613	-	99	83.333	ENSTBEG00000007092	RAB5C	99	75.000	Tupaia_belangeri
ENSCSAVG00000000613	-	99	83.951	ENSTTRG00000006673	RAB5C	99	75.455	Tursiops_truncatus
ENSCSAVG00000000613	-	99	83.333	ENSUAMG00000024343	RAB5C	99	75.000	Ursus_americanus
ENSCSAVG00000000613	-	99	83.333	ENSUMAG00000023270	RAB5C	99	75.000	Ursus_maritimus
ENSCSAVG00000000613	-	99	80.982	ENSXCOG00000006300	-	99	72.368	Xiphophorus_couchianus
ENSCSAVG00000000613	-	99	83.851	ENSXCOG00000016788	rab5c	98	77.064	Xiphophorus_couchianus
ENSCSAVG00000000613	-	99	80.982	ENSXMAG00000022179	-	99	72.889	Xiphophorus_maculatus
ENSCSAVG00000000613	-	99	83.333	ENSXMAG00000003266	rab5c	99	75.446	Xiphophorus_maculatus