EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000001078 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 13416 bases
Position: chrreftig_91:1019997-1033412
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000001842	RRM_1	PF00076.22	3.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000001876	-	1523	-	ENSCSAVP00000001843	246 (aa)	-	H2Y945
ENSCSAVT00000001877	-	1690	-	ENSCSAVP00000001844	340 (aa)	-	H2Y946
ENSCSAVT00000001875	-	1778	-	ENSCSAVP00000001842	553 (aa)	-	H2Y944

Gene Model

Click here to download ENSCSAVG00000001078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001078's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001078	-	57	39.607	ENSG00000063046	EIF4B	93	40.456	Homo_sapiens
ENSCSAVG00000001078	-	57	33.333	ENSANAG00000032230	-	96	33.425	Aotus_nancymaae
ENSCSAVG00000001078	-	59	36.695	ENSANAG00000030795	-	80	36.391	Aotus_nancymaae
ENSCSAVG00000001078	-	62	33.254	ENSANAG00000027568	-	83	34.704	Aotus_nancymaae
ENSCSAVG00000001078	-	55	35.443	ENSANAG00000026408	-	58	37.855	Aotus_nancymaae
ENSCSAVG00000001078	-	59	32.456	ENSANAG00000022099	-	58	35.314	Aotus_nancymaae
ENSCSAVG00000001078	-	53	35.493	ENSACLG00000009013	eif4bb	69	37.158	Astatotilapia_calliptera
ENSCSAVG00000001078	-	56	36.220	ENSAMXG00000041675	eif4ba	64	37.500	Astyanax_mexicanus
ENSCSAVG00000001078	-	63	34.259	ENSBTAG00000006883	EIF4B	72	35.225	Bos_taurus
ENSCSAVG00000001078	-	57	37.360	ENSCHIG00000016477	-	57	37.183	Capra_hircus
ENSCSAVG00000001078	-	62	33.645	ENSCHIG00000012380	-	67	35.225	Capra_hircus
ENSCSAVG00000001078	-	62	34.606	ENSTSYG00000012880	-	67	35.407	Carlito_syrichta
ENSCSAVG00000001078	-	54	33.428	ENSTSYG00000030094	-	54	47.727	Carlito_syrichta
ENSCSAVG00000001078	-	57	40.741	ENSCAPG00000009384	-	86	33.406	Cavia_aperea
ENSCSAVG00000001078	-	53	32.861	ENSCAPG00000011923	-	81	33.994	Cavia_aperea
ENSCSAVG00000001078	-	55	33.162	ENSCCAG00000035872	-	99	35.065	Cebus_capucinus
ENSCSAVG00000001078	-	54	34.524	ENSCCAG00000036571	-	61	35.030	Cebus_capucinus
ENSCSAVG00000001078	-	62	37.234	ENSCATG00000032007	-	68	35.854	Cercocebus_atys
ENSCSAVG00000001078	-	57	35.714	ENSCATG00000032438	-	80	41.772	Cercocebus_atys
ENSCSAVG00000001078	-	61	39.487	ENSCSAG00000014290	-	67	31.490	Chlorocebus_sabaeus
ENSCSAVG00000001078	-	57	36.579	ENSCSAG00000007929	-	62	37.203	Chlorocebus_sabaeus
ENSCSAVG00000001078	-	56	34.625	ENSCPBG00000019649	EIF4B	62	35.369	Chrysemys_picta_bellii
ENSCSAVG00000001078	-	55	56.231	ENSCING00000016816	-	94	55.932	Ciona_intestinalis
ENSCSAVG00000001078	-	60	34.783	ENSCANG00000043275	-	81	32.682	Colobus_angolensis_palliatus
ENSCSAVG00000001078	-	68	31.469	ENSCANG00000042944	-	84	41.667	Colobus_angolensis_palliatus
ENSCSAVG00000001078	-	59	32.632	ENSCANG00000037506	-	66	32.487	Colobus_angolensis_palliatus
ENSCSAVG00000001078	-	53	38.218	ENSCSEG00000004853	eif4bb	94	37.883	Cynoglossus_semilaevis
ENSCSAVG00000001078	-	62	34.442	ENSDORG00000004008	Eif4b	67	35.407	Dipodomys_ordii
ENSCSAVG00000001078	-	56	37.534	ENSEBUG00000007785	-	70	37.310	Eptatretus_burgeri
ENSCSAVG00000001078	-	62	34.434	ENSECAG00000024091	EIF4B	64	34.752	Equus_caballus
ENSCSAVG00000001078	-	58	34.118	ENSELUG00000012490	eif4ba	76	35.252	Esox_lucius
ENSCSAVG00000001078	-	57	39.691	ENSFALG00000004382	EIF4B	60	35.809	Ficedula_albicollis
ENSCSAVG00000001078	-	83	30.669	ENSFDAG00000009048	-	67	35.749	Fukomys_damarensis
ENSCSAVG00000001078	-	56	36.141	ENSGMOG00000019470	eif4bb	61	35.389	Gadus_morhua
ENSCSAVG00000001078	-	53	34.309	ENSGACG00000008010	eif4bb	61	35.509	Gasterosteus_aculeatus
ENSCSAVG00000001078	-	56	35.052	ENSGAGG00000025237	EIF4B	62	35.459	Gopherus_agassizii
ENSCSAVG00000001078	-	55	35.052	ENSGGOG00000013695	EIF4B	97	36.247	Gorilla_gorilla
ENSCSAVG00000001078	-	58	33.611	ENSGGOG00000037535	-	63	34.483	Gorilla_gorilla
ENSCSAVG00000001078	-	57	36.148	ENSGGOG00000037011	-	88	37.778	Gorilla_gorilla
ENSCSAVG00000001078	-	57	32.941	ENSGGOG00000036580	-	62	34.218	Gorilla_gorilla
ENSCSAVG00000001078	-	61	33.577	ENSGGOG00000004382	-	82	43.396	Gorilla_gorilla
ENSCSAVG00000001078	-	53	34.133	ENSHBUG00000023345	eif4bb	64	34.772	Haplochromis_burtoni
ENSCSAVG00000001078	-	56	31.714	ENSHGLG00000000983	-	54	35.069	Heterocephalus_glaber_female
ENSCSAVG00000001078	-	65	35.697	ENSHGLG00000004627	-	67	35.697	Heterocephalus_glaber_female
ENSCSAVG00000001078	-	62	30.843	ENSHGLG00000007993	-	66	31.643	Heterocephalus_glaber_female
ENSCSAVG00000001078	-	65	34.033	ENSHGLG00100000821	-	67	33.976	Heterocephalus_glaber_male
ENSCSAVG00000001078	-	62	34.442	ENSHGLG00100008532	-	68	35.749	Heterocephalus_glaber_male
ENSCSAVG00000001078	-	71	31.090	ENSHGLG00100001656	-	69	30.260	Heterocephalus_glaber_male
ENSCSAVG00000001078	-	79	38.058	ENSIPUG00000020173	EIF4B	62	36.883	Ictalurus_punctatus
ENSCSAVG00000001078	-	57	35.106	ENSSTOG00000029945	-	61	36.243	Ictidomys_tridecemlineatus
ENSCSAVG00000001078	-	57	37.255	ENSSTOG00000006800	-	61	38.920	Ictidomys_tridecemlineatus
ENSCSAVG00000001078	-	68	31.422	ENSMFAG00000033728	-	94	34.670	Macaca_fascicularis
ENSCSAVG00000001078	-	57	35.733	ENSMFAG00000044995	-	76	42.767	Macaca_fascicularis
ENSCSAVG00000001078	-	58	34.937	ENSMMUG00000042124	-	96	35.309	Macaca_mulatta
ENSCSAVG00000001078	-	57	32.723	ENSMMUG00000008391	-	62	34.946	Macaca_mulatta
ENSCSAVG00000001078	-	57	30.526	ENSMMUG00000038298	-	65	31.398	Macaca_mulatta
ENSCSAVG00000001078	-	58	32.964	ENSMNEG00000027441	-	85	35.315	Macaca_nemestrina
ENSCSAVG00000001078	-	58	34.937	ENSMNEG00000043577	-	96	35.787	Macaca_nemestrina
ENSCSAVG00000001078	-	68	31.193	ENSMNEG00000041946	-	95	32.958	Macaca_nemestrina
ENSCSAVG00000001078	-	57	30.789	ENSMNEG00000034554	-	83	30.728	Macaca_nemestrina
ENSCSAVG00000001078	-	57	32.275	ENSMNEG00000040490	-	61	34.511	Macaca_nemestrina
ENSCSAVG00000001078	-	55	33.724	ENSMLEG00000024919	-	62	33.529	Mandrillus_leucophaeus
ENSCSAVG00000001078	-	57	33.511	ENSMLEG00000028830	-	80	39.873	Mandrillus_leucophaeus
ENSCSAVG00000001078	-	62	35.049	ENSMLEG00000033967	-	89	37.634	Mandrillus_leucophaeus
ENSCSAVG00000001078	-	59	34.074	ENSMICG00000033942	-	91	34.160	Microcebus_murinus
ENSCSAVG00000001078	-	55	37.216	ENSMOCG00000006053	-	96	38.547	Microtus_ochrogaster
ENSCSAVG00000001078	-	62	33.174	ENSMOCG00000018841	-	71	33.981	Microtus_ochrogaster
ENSCSAVG00000001078	-	65	35.080	ENSMOCG00000017700	-	67	34.783	Microtus_ochrogaster
ENSCSAVG00000001078	-	57	35.354	ENSMUSG00000058655	Eif4b	94	36.061	Mus_musculus
ENSCSAVG00000001078	-	66	44.898	MGP_SPRETEiJ_G0021228	Eif4b	67	35.142	Mus_spretus
ENSCSAVG00000001078	-	62	34.442	ENSMLUG00000013021	EIF4B	67	35.238	Myotis_lucifugus
ENSCSAVG00000001078	-	63	35.971	ENSNGAG00000012353	Eif4b	67	37.010	Nannospalax_galili
ENSCSAVG00000001078	-	53	35.920	ENSNBRG00000015331	eif4bb	70	37.534	Neolamprologus_brichardi
ENSCSAVG00000001078	-	71	30.415	ENSNLEG00000035400	-	83	36.232	Nomascus_leucogenys
ENSCSAVG00000001078	-	56	34.527	ENSNLEG00000017727	EIF4B	97	37.047	Nomascus_leucogenys
ENSCSAVG00000001078	-	57	35.905	ENSNLEG00000027255	-	87	38.312	Nomascus_leucogenys
ENSCSAVG00000001078	-	80	35.433	ENSOPRG00000008447	EIF4B	68	35.377	Ochotona_princeps
ENSCSAVG00000001078	-	56	33.705	ENSODEG00000011370	-	90	33.248	Octodon_degus
ENSCSAVG00000001078	-	53	35.544	ENSONIG00000019380	eif4bb	66	36.951	Oreochromis_niloticus
ENSCSAVG00000001078	-	57	35.440	ENSOANG00000009940	-	65	36.592	Ornithorhynchus_anatinus
ENSCSAVG00000001078	-	80	35.154	ENSOCUG00000013484	EIF4B	65	35.749	Oryctolagus_cuniculus
ENSCSAVG00000001078	-	62	33.645	ENSOARG00000016759	EIF4B	67	35.225	Ovis_aries
ENSCSAVG00000001078	-	55	37.647	ENSPPAG00000043040	-	92	37.719	Pan_paniscus
ENSCSAVG00000001078	-	57	31.832	ENSPPAG00000030041	-	59	31.045	Pan_paniscus
ENSCSAVG00000001078	-	56	34.561	ENSPPAG00000038159	-	63	34.483	Pan_paniscus
ENSCSAVG00000001078	-	55	33.247	ENSPPAG00000030546	-	92	35.770	Pan_paniscus
ENSCSAVG00000001078	-	52	34.670	ENSPTRG00000043521	-	91	36.538	Pan_troglodytes
ENSCSAVG00000001078	-	61	35.236	ENSPTRG00000050351	-	96	35.526	Pan_troglodytes
ENSCSAVG00000001078	-	61	34.390	ENSPTRG00000040264	-	89	35.772	Pan_troglodytes
ENSCSAVG00000001078	-	56	35.057	ENSPTRG00000049274	-	65	34.985	Pan_troglodytes
ENSCSAVG00000001078	-	61	35.236	ENSPTRG00000043454	-	96	35.526	Pan_troglodytes
ENSCSAVG00000001078	-	55	35.389	ENSPTRG00000043800	-	87	43.558	Pan_troglodytes
ENSCSAVG00000001078	-	58	35.165	ENSPANG00000034874	-	97	34.890	Papio_anubis
ENSCSAVG00000001078	-	57	36.641	ENSPANG00000005737	-	94	37.113	Papio_anubis
ENSCSAVG00000001078	-	57	35.393	ENSPANG00000029637	-	87	38.514	Papio_anubis
ENSCSAVG00000001078	-	61	43.077	ENSPMGG00000022372	eif4bb	86	43.636	Periophthalmus_magnuspinnatus
ENSCSAVG00000001078	-	61	35.323	ENSPEMG00000016399	Eif4b	66	37.437	Peromyscus_maniculatus_bairdii
ENSCSAVG00000001078	-	55	35.385	ENSPMAG00000005484	EIF4B	63	35.052	Petromyzon_marinus
ENSCSAVG00000001078	-	57	35.584	ENSPCIG00000011212	EIF4B	62	36.528	Phascolarctos_cinereus
ENSCSAVG00000001078	-	70	36.391	ENSPCOG00000016096	-	66	37.870	Propithecus_coquereli
ENSCSAVG00000001078	-	56	35.325	ENSPNAG00000006684	eif4ba	71	35.417	Pygocentrus_nattereri
ENSCSAVG00000001078	-	54	34.463	ENSRBIG00000032876	-	93	35.411	Rhinopithecus_bieti
ENSCSAVG00000001078	-	57	34.341	ENSRBIG00000038114	-	86	34.637	Rhinopithecus_bieti
ENSCSAVG00000001078	-	55	34.021	ENSRROG00000028884	-	90	40.764	Rhinopithecus_roxellana
ENSCSAVG00000001078	-	54	34.195	ENSRROG00000034314	-	75	39.865	Rhinopithecus_roxellana
ENSCSAVG00000001078	-	57	34.627	ENSSBOG00000032333	-	62	33.929	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001078	-	57	35.065	ENSSHAG00000003682	EIF4B	62	36.010	Sarcophilus_harrisii
ENSCSAVG00000001078	-	56	34.000	ENSSMAG00000007678	eif4bb	61	35.443	Scophthalmus_maximus
ENSCSAVG00000001078	-	53	33.249	ENSSDUG00000022993	eif4bb	62	33.413	Seriola_dumerili
ENSCSAVG00000001078	-	53	32.915	ENSSLDG00000010210	eif4bb	62	33.095	Seriola_lalandi_dorsalis
ENSCSAVG00000001078	-	61	45.000	ENSSARG00000000838	EIF4B	55	44.654	Sorex_araneus
ENSCSAVG00000001078	-	56	35.204	ENSSPUG00000017451	EIF4B	62	36.364	Sphenodon_punctatus
ENSCSAVG00000001078	-	62	35.821	ENSSSCG00000032028	-	68	34.988	Sus_scrofa
ENSCSAVG00000001078	-	50	40.104	ENSTGUG00000003829	EIF4B	75	35.233	Taeniopygia_guttata
ENSCSAVG00000001078	-	63	48.936	ENSTNIG00000007192	eif4bb	59	38.611	Tetraodon_nigroviridis
ENSCSAVG00000001078	-	62	34.390	ENSVPAG00000007999	EIF4B	66	36.049	Vicugna_pacos
ENSCSAVG00000001078	-	62	34.937	ENSVVUG00000016220	-	65	34.264	Vulpes_vulpes
ENSCSAVG00000001078	-	57	35.821	ENSXETG00000001829	eif4b	65	34.709	Xenopus_tropicalis