EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000001085 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 16180 bases
Position: chrreftig_62:113186-129365
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000001854	GTP_EFTU	PF00009.27	1.8e-105	1	2
ENSCSAVP00000001854	GTP_EFTU	PF00009.27	1.8e-105	2	2
ENSCSAVP00000001854	GTP_EFTU_D2	PF03144.25	3.5e-26	1	2
ENSCSAVP00000001854	GTP_EFTU_D2	PF03144.25	3.5e-26	2	2
ENSCSAVP00000001854	GTP_EFTU_D3	PF03143.17	3.9e-78	1	2
ENSCSAVP00000001854	GTP_EFTU_D3	PF03143.17	3.9e-78	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000001887	-	3068	-	ENSCSAVP00000001854	970 (aa)	-	H2Y956

Gene Model

Click here to download ENSCSAVG00000001085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001085's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001085	-	87	39.486	ENSCSAVG00000002297	-	69	39.486
ENSCSAVG00000001085	-	90	77.354	ENSCSAVG00000009663	-	98	77.384
ENSCSAVG00000001085	-	91	75.054	ENSCSAVG00000006357	-	98	86.842
ENSCSAVG00000001085	-	88	32.009	ENSCSAVG00000010206	-	83	32.009
ENSCSAVG00000001085	-	90	76.718	ENSCSAVG00000003196	-	98	76.754
ENSCSAVG00000001085	-	89	30.805	ENSCSAVG00000009380	-	86	30.805

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001085	-	89	75.336	ENSAPOG00000004714	-	99	74.292	Acanthochromis_polyacanthus
ENSCSAVG00000001085	-	81	75.971	ENSACIG00000001219	-	99	75.971	Amphilophus_citrinellus
ENSCSAVG00000001085	-	79	76.441	ENSAOCG00000022002	-	99	75.243	Amphiprion_ocellaris
ENSCSAVG00000001085	-	91	76.688	ENSAOCG00000022039	-	99	76.688	Amphiprion_ocellaris
ENSCSAVG00000001085	-	91	76.906	ENSAPEG00000016361	-	99	76.906	Amphiprion_percula
ENSCSAVG00000001085	-	89	77.354	ENSATEG00000003244	-	96	76.253	Anabas_testudineus
ENSCSAVG00000001085	-	91	76.471	ENSACLG00000022560	-	99	76.471	Astatotilapia_calliptera
ENSCSAVG00000001085	-	91	74.728	WBGene00001169	eef-1A.2	99	74.728	Caenorhabditis_elegans
ENSCSAVG00000001085	-	91	74.728	WBGene00001168	eef-1A.1	99	74.728	Caenorhabditis_elegans
ENSCSAVG00000001085	-	90	77.342	ENSCING00000007703	-	98	77.342	Ciona_intestinalis
ENSCSAVG00000001085	-	90	77.434	ENSCING00000018894	-	98	77.462	Ciona_intestinalis
ENSCSAVG00000001085	-	89	77.455	ENSCING00000005126	-	99	76.906	Ciona_intestinalis
ENSCSAVG00000001085	-	90	75.764	ENSCING00000021478	-	99	75.764	Ciona_intestinalis
ENSCSAVG00000001085	-	81	75.485	ENSCSEG00000007972	-	99	75.485	Cynoglossus_semilaevis
ENSCSAVG00000001085	-	81	76.214	ENSCSEG00000007992	-	98	76.214	Cynoglossus_semilaevis
ENSCSAVG00000001085	-	89	76.457	ENSCSEG00000008011	-	99	75.054	Cynoglossus_semilaevis
ENSCSAVG00000001085	-	89	77.354	ENSCVAG00000019356	-	99	76.253	Cyprinodon_variegatus
ENSCSAVG00000001085	-	91	75.771	FBgn0000557	eEF1alpha2	99	75.599	Drosophila_melanogaster
ENSCSAVG00000001085	-	91	76.573	FBgn0284245	eEF1alpha1	99	76.573	Drosophila_melanogaster
ENSCSAVG00000001085	-	90	74.945	ENSEBUG00000015814	-	99	74.945	Eptatretus_burgeri
ENSCSAVG00000001085	-	91	76.688	ENSFHEG00000015054	-	99	76.688	Fundulus_heteroclitus
ENSCSAVG00000001085	-	89	76.906	ENSGAFG00000014646	-	99	75.817	Gambusia_affinis
ENSCSAVG00000001085	-	91	74.783	ENSGACG00000002143	-	99	74.783	Gasterosteus_aculeatus
ENSCSAVG00000001085	-	89	77.477	ENSGACG00000002182	-	99	76.035	Gasterosteus_aculeatus
ENSCSAVG00000001085	-	90	77.582	ENSHCOG00000008489	-	99	77.582	Hippocampus_comes
ENSCSAVG00000001085	-	89	77.324	ENSHCOG00000008468	-	99	76.211	Hippocampus_comes
ENSCSAVG00000001085	-	91	76.253	ENSLBEG00000002955	-	99	76.253	Labrus_bergylta
ENSCSAVG00000001085	-	89	75.561	ENSLBEG00000002759	-	99	74.510	Labrus_bergylta
ENSCSAVG00000001085	-	89	77.578	ENSMAMG00000007715	-	99	76.471	Mastacembelus_armatus
ENSCSAVG00000001085	-	91	75.381	ENSMMOG00000001106	-	99	75.381	Mola_mola
ENSCSAVG00000001085	-	89	77.130	ENSMMOG00000001165	-	97	87.356	Mola_mola
ENSCSAVG00000001085	-	89	72.109	ENSMMOG00000018160	-	95	86.207	Mola_mola
ENSCSAVG00000001085	-	90	66.300	ENSNBRG00000017346	-	99	66.300	Neolamprologus_brichardi
ENSCSAVG00000001085	-	70	75.071	ENSONIG00000017760	-	98	75.071	Oreochromis_niloticus
ENSCSAVG00000001085	-	89	77.578	ENSORLG00000007614	eef1a	99	76.471	Oryzias_latipes
ENSCSAVG00000001085	-	91	77.174	ENSORLG00015002397	-	99	77.174	Oryzias_latipes_hsok
ENSCSAVG00000001085	-	89	77.578	ENSOMEG00000018226	-	99	76.471	Oryzias_melastigma
ENSCSAVG00000001085	-	86	49.761	ENSPMGG00000022427	-	96	61.250	Periophthalmus_magnuspinnatus
ENSCSAVG00000001085	-	89	77.878	ENSPMGG00000023911	-	97	89.535	Periophthalmus_magnuspinnatus
ENSCSAVG00000001085	-	89	76.906	ENSPFOG00000003924	-	99	75.000	Poecilia_formosa
ENSCSAVG00000001085	-	89	76.906	ENSPLAG00000004316	-	99	75.817	Poecilia_latipinna
ENSCSAVG00000001085	-	89	76.906	ENSPMEG00000001010	-	99	75.817	Poecilia_mexicana
ENSCSAVG00000001085	-	91	77.342	ENSPREG00000008243	-	99	77.342	Poecilia_reticulata
ENSCSAVG00000001085	-	91	76.471	ENSPNYG00000007263	-	99	76.471	Pundamilia_nyererei
ENSCSAVG00000001085	-	89	72.360	YPR080W	TEF1	99	71.895	Saccharomyces_cerevisiae
ENSCSAVG00000001085	-	89	72.360	YBR118W	TEF2	99	71.895	Saccharomyces_cerevisiae
ENSCSAVG00000001085	-	89	69.099	ENSSMAG00000018469	-	99	67.983	Scophthalmus_maximus
ENSCSAVG00000001085	-	89	77.252	ENSSDUG00000008198	-	99	75.817	Seriola_dumerili
ENSCSAVG00000001085	-	89	77.703	ENSSPAG00000001710	-	99	76.586	Stegastes_partitus
ENSCSAVG00000001085	-	91	77.124	ENSTRUG00000005066	-	99	77.124	Takifugu_rubripes
ENSCSAVG00000001085	-	89	77.354	ENSTRUG00000005727	ef-1a	99	76.253	Takifugu_rubripes
ENSCSAVG00000001085	-	89	77.928	ENSTNIG00000002619	-	99	76.471	Tetraodon_nigroviridis
ENSCSAVG00000001085	-	89	76.417	ENSTNIG00000002617	-	93	76.417	Tetraodon_nigroviridis
ENSCSAVG00000001085	-	89	76.906	ENSXCOG00000001542	-	97	88.372	Xiphophorus_couchianus