EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000001117 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 13093 bases
Position: chrreftig_31:345492-358584
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000001918	DEAD	PF00270.29	4e-07	1	1
ENSCSAVP00000001919	DEAD	PF00270.29	1.6e-06	1	1
ENSCSAVP00000001917	DEAD	PF00270.29	2.2e-06	1	1
ENSCSAVP00000001915	DEAD	PF00270.29	2.3e-06	1	1
ENSCSAVP00000001916	DEAD	PF00270.29	2.5e-06	1	1
ENSCSAVP00000001912	DEAD	PF00270.29	3.5e-06	1	1
ENSCSAVP00000001913	DEAD	PF00270.29	3.6e-06	1	1
ENSCSAVP00000001914	DEAD	PF00270.29	3.6e-06	1	1
ENSCSAVP00000001917	HA2	PF04408.23	1.3e-21	1	1
ENSCSAVP00000001918	HA2	PF04408.23	2.2e-21	1	1
ENSCSAVP00000001920	HA2	PF04408.23	2.3e-21	1	1
ENSCSAVP00000001919	HA2	PF04408.23	3.2e-21	1	1
ENSCSAVP00000001915	HA2	PF04408.23	1.2e-20	1	1
ENSCSAVP00000001916	HA2	PF04408.23	1.3e-20	1	1
ENSCSAVP00000001912	HA2	PF04408.23	1.7e-20	1	1
ENSCSAVP00000001913	HA2	PF04408.23	1.7e-20	1	1
ENSCSAVP00000001914	HA2	PF04408.23	1.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000001954	-	1709	-	ENSCSAVP00000001920	517 (aa)	-	H2Y9C2
ENSCSAVT00000001951	-	2389	-	ENSCSAVP00000001917	786 (aa)	-	H2Y9B9
ENSCSAVT00000001950	-	3205	-	ENSCSAVP00000001916	1014 (aa)	-	H2Y9B8
ENSCSAVT00000001953	-	1893	-	ENSCSAVP00000001919	631 (aa)	-	H2Y9C1
ENSCSAVT00000001952	-	1983	-	ENSCSAVP00000001918	661 (aa)	-	H2Y9C0
ENSCSAVT00000001946	-	3803	-	ENSCSAVP00000001912	1206 (aa)	-	H2Y9B4
ENSCSAVT00000001947	-	3810	-	ENSCSAVP00000001913	1214 (aa)	-	H2Y9B5
ENSCSAVT00000001948	-	3817	-	ENSCSAVP00000001914	1219 (aa)	-	H2Y9B6
ENSCSAVT00000001949	-	2790	-	ENSCSAVP00000001915	930 (aa)	-	H2Y9B7

Gene Model

Click here to download ENSCSAVG00000001117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001117	-	99	51.911	ENSCSAVG00000003870	-	75	51.084
ENSCSAVG00000001117	-	94	42.000	ENSCSAVG00000001493	-	51	42.786
ENSCSAVG00000001117	-	88	30.901	ENSCSAVG00000009685	-	77	39.130
ENSCSAVG00000001117	-	98	42.308	ENSCSAVG00000008110	-	87	42.169
ENSCSAVG00000001117	-	98	52.258	ENSCSAVG00000002918	-	72	45.510
ENSCSAVG00000001117	-	97	41.270	ENSCSAVG00000009212	-	64	40.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001117	-	100	79.873	ENSG00000140829	DHX38	99	67.895	Homo_sapiens
ENSCSAVG00000001117	-	100	80.349	ENSAPOG00000010788	dhx38	99	63.882	Acanthochromis_polyacanthus
ENSCSAVG00000001117	-	100	79.873	ENSAMEG00000002227	DHX38	99	64.430	Ailuropoda_melanoleuca
ENSCSAVG00000001117	-	100	80.032	ENSACIG00000000573	dhx38	99	63.246	Amphilophus_citrinellus
ENSCSAVG00000001117	-	78	77.206	ENSAOCG00000013483	-	98	62.366	Amphiprion_ocellaris
ENSCSAVG00000001117	-	100	80.507	ENSAOCG00000007610	dhx38	99	64.871	Amphiprion_ocellaris
ENSCSAVG00000001117	-	100	80.507	ENSAPEG00000011410	dhx38	99	64.025	Amphiprion_percula
ENSCSAVG00000001117	-	100	79.556	ENSATEG00000004692	dhx38	99	62.857	Anabas_testudineus
ENSCSAVG00000001117	-	100	79.398	ENSAPLG00000015279	DHX38	94	73.789	Anas_platyrhynchos
ENSCSAVG00000001117	-	100	74.103	ENSACAG00000008115	DHX38	99	57.986	Anolis_carolinensis
ENSCSAVG00000001117	-	100	79.873	ENSANAG00000022259	DHX38	100	64.749	Aotus_nancymaae
ENSCSAVG00000001117	-	100	75.753	ENSACLG00000001837	dhx38	99	60.995	Astatotilapia_calliptera
ENSCSAVG00000001117	-	100	78.288	ENSAMXG00000004396	dhx38	97	64.156	Astyanax_mexicanus
ENSCSAVG00000001117	-	100	79.715	ENSBTAG00000013265	DHX38	100	64.320	Bos_taurus
ENSCSAVG00000001117	-	100	73.259	WBGene00003389	mog-1	99	55.749	Caenorhabditis_elegans
ENSCSAVG00000001117	-	100	79.873	ENSCJAG00000015103	DHX38	100	64.749	Callithrix_jacchus
ENSCSAVG00000001117	-	100	79.715	ENSCAFG00000020228	DHX38	100	64.668	Canis_familiaris
ENSCSAVG00000001117	-	100	79.715	ENSCAFG00020020392	DHX38	100	64.453	Canis_lupus_dingo
ENSCSAVG00000001117	-	100	79.715	ENSCHIG00000027105	DHX38	100	64.320	Capra_hircus
ENSCSAVG00000001117	-	100	80.032	ENSTSYG00000012023	DHX38	100	64.320	Carlito_syrichta
ENSCSAVG00000001117	-	100	79.715	ENSCAPG00000016032	DHX38	100	63.563	Cavia_aperea
ENSCSAVG00000001117	-	100	79.715	ENSCPOG00000013965	DHX38	99	64.107	Cavia_porcellus
ENSCSAVG00000001117	-	100	79.873	ENSCCAG00000031157	DHX38	100	64.882	Cebus_capucinus
ENSCSAVG00000001117	-	100	70.886	ENSCATG00000036889	DHX38	100	59.822	Cercocebus_atys
ENSCSAVG00000001117	-	100	79.715	ENSCLAG00000008250	DHX38	100	64.239	Chinchilla_lanigera
ENSCSAVG00000001117	-	100	79.873	ENSCSAG00000004218	DHX38	100	64.725	Chlorocebus_sabaeus
ENSCSAVG00000001117	-	92	80.069	ENSCHOG00000009444	-	100	73.560	Choloepus_hoffmanni
ENSCSAVG00000001117	-	100	79.239	ENSCPBG00000027010	DHX38	100	63.965	Chrysemys_picta_bellii
ENSCSAVG00000001117	-	100	94.929	ENSCING00000003597	-	98	82.273	Ciona_intestinalis
ENSCSAVG00000001117	-	100	79.873	ENSCANG00000039299	DHX38	100	64.825	Colobus_angolensis_palliatus
ENSCSAVG00000001117	-	100	79.873	ENSCGRG00001021542	Dhx38	100	64.401	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001117	-	100	79.873	ENSCGRG00000017386	Dhx38	100	64.401	Cricetulus_griseus_crigri
ENSCSAVG00000001117	-	100	79.715	ENSCSEG00000008437	dhx38	99	62.272	Cynoglossus_semilaevis
ENSCSAVG00000001117	-	100	80.507	ENSCVAG00000023150	dhx38	99	63.133	Cyprinodon_variegatus
ENSCSAVG00000001117	-	100	79.715	ENSDARG00000100013	dhx38	99	62.796	Danio_rerio
ENSCSAVG00000001117	-	100	80.190	ENSDNOG00000006717	DHX38	100	64.696	Dasypus_novemcinctus
ENSCSAVG00000001117	-	100	79.873	ENSDORG00000005226	Dhx38	100	64.782	Dipodomys_ordii
ENSCSAVG00000001117	-	100	74.643	FBgn0026713	l(1)G0007	100	69.444	Drosophila_melanogaster
ENSCSAVG00000001117	-	70	80.682	ENSETEG00000014663	-	58	81.777	Echinops_telfairi
ENSCSAVG00000001117	-	100	78.764	ENSEBUG00000005875	dhx38	99	62.745	Eptatretus_burgeri
ENSCSAVG00000001117	-	100	79.715	ENSEASG00005013249	DHX38	99	65.062	Equus_asinus_asinus
ENSCSAVG00000001117	-	100	79.873	ENSECAG00000000526	DHX38	99	64.749	Equus_caballus
ENSCSAVG00000001117	-	100	76.070	ENSELUG00000014379	dhx38	99	58.615	Esox_lucius
ENSCSAVG00000001117	-	100	80.032	ENSFCAG00000005831	DHX38	100	64.749	Felis_catus
ENSCSAVG00000001117	-	100	79.239	ENSFALG00000002671	DHX38	99	62.480	Ficedula_albicollis
ENSCSAVG00000001117	-	100	79.715	ENSFDAG00000015601	DHX38	100	64.511	Fukomys_damarensis
ENSCSAVG00000001117	-	100	80.666	ENSFHEG00000006031	dhx38	99	63.519	Fundulus_heteroclitus
ENSCSAVG00000001117	-	100	79.081	ENSGMOG00000002840	dhx38	99	63.288	Gadus_morhua
ENSCSAVG00000001117	-	100	79.398	ENSGALG00000000787	DHX38	99	64.268	Gallus_gallus
ENSCSAVG00000001117	-	100	80.349	ENSGAFG00000017271	dhx38	99	63.262	Gambusia_affinis
ENSCSAVG00000001117	-	100	79.873	ENSGACG00000015776	dhx38	99	63.158	Gasterosteus_aculeatus
ENSCSAVG00000001117	-	100	79.239	ENSGAGG00000015601	DHX38	100	64.125	Gopherus_agassizii
ENSCSAVG00000001117	-	100	79.873	ENSGGOG00000013052	DHX38	100	64.482	Gorilla_gorilla
ENSCSAVG00000001117	-	100	79.873	ENSHBUG00000013363	dhx38	99	62.875	Haplochromis_burtoni
ENSCSAVG00000001117	-	100	79.715	ENSHGLG00000013308	DHX38	99	64.500	Heterocephalus_glaber_female
ENSCSAVG00000001117	-	100	78.447	ENSHGLG00100015625	DHX38	99	63.851	Heterocephalus_glaber_male
ENSCSAVG00000001117	-	100	79.556	ENSHCOG00000003102	dhx38	99	63.782	Hippocampus_comes
ENSCSAVG00000001117	-	100	79.556	ENSIPUG00000006233	DHX38	99	65.375	Ictalurus_punctatus
ENSCSAVG00000001117	-	100	79.873	ENSSTOG00000000534	DHX38	100	64.401	Ictidomys_tridecemlineatus
ENSCSAVG00000001117	-	100	79.873	ENSJJAG00000015149	Dhx38	99	74.515	Jaculus_jaculus
ENSCSAVG00000001117	-	100	80.349	ENSKMAG00000006694	dhx38	99	63.312	Kryptolebias_marmoratus
ENSCSAVG00000001117	-	100	79.715	ENSLBEG00000026364	dhx38	99	62.802	Labrus_bergylta
ENSCSAVG00000001117	-	100	72.152	ENSLACG00000013007	DHX38	99	60.146	Latimeria_chalumnae
ENSCSAVG00000001117	-	100	79.239	ENSLOCG00000004169	dhx38	99	62.341	Lepisosteus_oculatus
ENSCSAVG00000001117	-	100	79.873	ENSLAFG00000016360	DHX38	100	64.806	Loxodonta_africana
ENSCSAVG00000001117	-	100	79.873	ENSMFAG00000031852	DHX38	100	64.644	Macaca_fascicularis
ENSCSAVG00000001117	-	100	79.873	ENSMMUG00000000677	DHX38	100	64.563	Macaca_mulatta
ENSCSAVG00000001117	-	100	79.873	ENSMNEG00000045083	DHX38	100	64.644	Macaca_nemestrina
ENSCSAVG00000001117	-	100	79.873	ENSMLEG00000029417	DHX38	100	64.644	Mandrillus_leucophaeus
ENSCSAVG00000001117	-	100	79.715	ENSMAMG00000021512	dhx38	99	63.571	Mastacembelus_armatus
ENSCSAVG00000001117	-	100	75.436	ENSMZEG00005014283	dhx38	99	60.427	Maylandia_zebra
ENSCSAVG00000001117	-	100	79.398	ENSMGAG00000008791	DHX38	93	73.789	Meleagris_gallopavo
ENSCSAVG00000001117	-	100	79.873	ENSMAUG00000006330	Dhx38	99	69.786	Mesocricetus_auratus
ENSCSAVG00000001117	-	100	80.032	ENSMICG00000011402	DHX38	100	64.644	Microcebus_murinus
ENSCSAVG00000001117	-	100	79.715	ENSMOCG00000016798	Dhx38	100	63.526	Microtus_ochrogaster
ENSCSAVG00000001117	-	100	80.507	ENSMMOG00000016558	dhx38	99	64.506	Mola_mola
ENSCSAVG00000001117	-	100	79.239	ENSMODG00000002549	DHX38	99	64.332	Monodelphis_domestica
ENSCSAVG00000001117	-	100	80.190	ENSMALG00000021005	dhx38	99	62.245	Monopterus_albus
ENSCSAVG00000001117	-	100	79.715	MGP_CAROLIEiJ_G0031541	Dhx38	99	64.529	Mus_caroli
ENSCSAVG00000001117	-	100	79.715	ENSMUSG00000037993	Dhx38	99	64.418	Mus_musculus
ENSCSAVG00000001117	-	100	79.715	MGP_PahariEiJ_G0023141	Dhx38	99	64.610	Mus_pahari
ENSCSAVG00000001117	-	100	79.715	MGP_SPRETEiJ_G0032659	Dhx38	99	64.337	Mus_spretus
ENSCSAVG00000001117	-	100	79.873	ENSMPUG00000007766	DHX38	100	64.506	Mustela_putorius_furo
ENSCSAVG00000001117	-	100	79.873	ENSMLUG00000013866	DHX38	100	65.016	Myotis_lucifugus
ENSCSAVG00000001117	-	100	79.715	ENSNGAG00000014084	Dhx38	100	64.753	Nannospalax_galili
ENSCSAVG00000001117	-	100	76.070	ENSNBRG00000010899	dhx38	99	61.440	Neolamprologus_brichardi
ENSCSAVG00000001117	-	100	79.873	ENSNLEG00000005630	DHX38	100	64.553	Nomascus_leucogenys
ENSCSAVG00000001117	-	74	78.866	ENSMEUG00000007747	-	72	72.803	Notamacropus_eugenii
ENSCSAVG00000001117	-	100	75.277	ENSOPRG00000012142	-	100	59.788	Ochotona_princeps
ENSCSAVG00000001117	-	100	79.556	ENSOPRG00000001884	DHX38	99	63.703	Ochotona_princeps
ENSCSAVG00000001117	-	100	79.398	ENSODEG00000015472	DHX38	99	64.634	Octodon_degus
ENSCSAVG00000001117	-	100	80.032	ENSONIG00000005916	dhx38	99	62.875	Oreochromis_niloticus
ENSCSAVG00000001117	-	100	79.398	ENSOCUG00000009067	DHX38	100	64.540	Oryctolagus_cuniculus
ENSCSAVG00000001117	-	100	80.507	ENSORLG00000007853	dhx38	99	63.838	Oryzias_latipes
ENSCSAVG00000001117	-	100	80.507	ENSORLG00020009844	dhx38	99	63.838	Oryzias_latipes_hni
ENSCSAVG00000001117	-	100	80.507	ENSORLG00015007999	dhx38	99	63.788	Oryzias_latipes_hsok
ENSCSAVG00000001117	-	100	80.349	ENSOMEG00000001782	dhx38	99	63.283	Oryzias_melastigma
ENSCSAVG00000001117	-	100	80.190	ENSOGAG00000008658	DHX38	100	64.810	Otolemur_garnettii
ENSCSAVG00000001117	-	100	79.715	ENSOARG00000003723	DHX38	100	62.066	Ovis_aries
ENSCSAVG00000001117	-	100	79.873	ENSPPAG00000042488	DHX38	100	64.482	Pan_paniscus
ENSCSAVG00000001117	-	100	80.032	ENSPPRG00000008930	DHX38	100	64.749	Panthera_pardus
ENSCSAVG00000001117	-	100	80.032	ENSPTIG00000017274	DHX38	100	64.749	Panthera_tigris_altaica
ENSCSAVG00000001117	-	100	79.873	ENSPTRG00000008338	DHX38	100	64.482	Pan_troglodytes
ENSCSAVG00000001117	-	100	79.873	ENSPANG00000022057	DHX38	100	64.644	Papio_anubis
ENSCSAVG00000001117	-	100	79.873	ENSPKIG00000009708	dhx38	99	62.948	Paramormyrops_kingsleyae
ENSCSAVG00000001117	-	100	77.496	ENSPMGG00000006063	dhx38	99	62.632	Periophthalmus_magnuspinnatus
ENSCSAVG00000001117	-	100	79.873	ENSPEMG00000008011	Dhx38	100	64.459	Peromyscus_maniculatus_bairdii
ENSCSAVG00000001117	-	100	79.398	ENSPCIG00000001712	DHX38	99	65.054	Phascolarctos_cinereus
ENSCSAVG00000001117	-	100	79.843	ENSPFOG00000001246	dhx38	99	62.904	Poecilia_formosa
ENSCSAVG00000001117	-	100	80.349	ENSPLAG00000004022	dhx38	99	63.355	Poecilia_latipinna
ENSCSAVG00000001117	-	100	80.190	ENSPMEG00000015475	dhx38	99	63.196	Poecilia_mexicana
ENSCSAVG00000001117	-	100	80.507	ENSPREG00000023207	dhx38	99	64.806	Poecilia_reticulata
ENSCSAVG00000001117	-	100	79.272	ENSPPYG00000007515	DHX38	100	64.349	Pongo_abelii
ENSCSAVG00000001117	-	95	79.402	ENSPCAG00000010592	DHX38	92	71.463	Procavia_capensis
ENSCSAVG00000001117	-	100	80.032	ENSPCOG00000027770	DHX38	100	64.725	Propithecus_coquereli
ENSCSAVG00000001117	-	100	79.715	ENSPVAG00000010259	DHX38	99	66.059	Pteropus_vampyrus
ENSCSAVG00000001117	-	100	79.715	ENSPNYG00000013335	dhx38	99	63.162	Pundamilia_nyererei
ENSCSAVG00000001117	-	100	79.715	ENSPNAG00000004859	dhx38	99	64.222	Pygocentrus_nattereri
ENSCSAVG00000001117	-	100	79.556	ENSRNOG00000014619	Dhx38	100	64.078	Rattus_norvegicus
ENSCSAVG00000001117	-	100	79.873	ENSRBIG00000025475	DHX38	100	64.644	Rhinopithecus_bieti
ENSCSAVG00000001117	-	100	79.873	ENSRROG00000028630	DHX38	100	64.644	Rhinopithecus_roxellana
ENSCSAVG00000001117	-	99	56.094	YKR086W	PRP16	68	51.421	Saccharomyces_cerevisiae
ENSCSAVG00000001117	-	100	79.873	ENSSBOG00000021842	DHX38	100	64.668	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001117	-	92	73.413	ENSSHAG00000016871	DHX38	99	58.232	Sarcophilus_harrisii
ENSCSAVG00000001117	-	100	80.032	ENSSFOG00015014930	dhx38	99	62.807	Scleropages_formosus
ENSCSAVG00000001117	-	100	79.556	ENSSMAG00000000095	dhx38	99	63.927	Scophthalmus_maximus
ENSCSAVG00000001117	-	100	80.349	ENSSDUG00000001413	dhx38	99	63.593	Seriola_dumerili
ENSCSAVG00000001117	-	100	74.802	ENSSLDG00000021050	dhx38	99	60.786	Seriola_lalandi_dorsalis
ENSCSAVG00000001117	-	100	80.349	ENSSPAG00000020537	dhx38	99	64.119	Stegastes_partitus
ENSCSAVG00000001117	-	99	85.333	ENSSSCG00000002748	DHX38	92	75.148	Sus_scrofa
ENSCSAVG00000001117	-	100	74.803	ENSTGUG00000008196	DHX38	99	61.650	Taeniopygia_guttata
ENSCSAVG00000001117	-	100	80.666	ENSTRUG00000017588	dhx38	99	63.419	Takifugu_rubripes
ENSCSAVG00000001117	-	100	80.666	ENSTNIG00000009345	dhx38	99	63.111	Tetraodon_nigroviridis
ENSCSAVG00000001117	-	95	73.256	ENSTBEG00000001426	DHX38	100	57.340	Tupaia_belangeri
ENSCSAVG00000001117	-	100	79.873	ENSTTRG00000001914	DHX38	95	72.198	Tursiops_truncatus
ENSCSAVG00000001117	-	100	79.873	ENSUAMG00000020435	DHX38	100	64.782	Ursus_americanus
ENSCSAVG00000001117	-	100	79.873	ENSUMAG00000018189	DHX38	100	64.874	Ursus_maritimus
ENSCSAVG00000001117	-	100	79.715	ENSVVUG00000017474	DHX38	100	64.668	Vulpes_vulpes
ENSCSAVG00000001117	-	100	79.873	ENSXETG00000023447	dhx38	99	64.143	Xenopus_tropicalis
ENSCSAVG00000001117	-	100	80.507	ENSXCOG00000011321	dhx38	99	63.971	Xiphophorus_couchianus
ENSCSAVG00000001117	-	100	80.507	ENSXMAG00000003292	dhx38	99	63.391	Xiphophorus_maculatus