EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000001120 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 9152 bases
Position: chrreftig_7:238378-247529
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000001923	NMD3	PF04981.13	2.6e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000001957	-	1562	-	ENSCSAVP00000001923	450 (aa)	-	H2Y9C5

Gene Model

Click here to download ENSCSAVG00000001120's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001120's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001120	-	97	54.875	ENSG00000169251	NMD3	87	54.875	Homo_sapiens
ENSCSAVG00000001120	-	97	55.000	ENSAPOG00000022912	nmd3	87	55.000	Acanthochromis_polyacanthus
ENSCSAVG00000001120	-	97	54.751	ENSAMEG00000001584	NMD3	87	54.751	Ailuropoda_melanoleuca
ENSCSAVG00000001120	-	97	50.682	ENSACIG00000015196	nmd3	87	50.682	Amphilophus_citrinellus
ENSCSAVG00000001120	-	97	54.773	ENSAOCG00000009086	nmd3	87	54.773	Amphiprion_ocellaris
ENSCSAVG00000001120	-	97	54.545	ENSAPEG00000000329	nmd3	87	54.545	Amphiprion_percula
ENSCSAVG00000001120	-	97	54.773	ENSATEG00000014351	nmd3	87	54.773	Anabas_testudineus
ENSCSAVG00000001120	-	97	52.370	ENSAPLG00000014786	NMD3	87	52.370	Anas_platyrhynchos
ENSCSAVG00000001120	-	97	55.102	ENSACAG00000007349	NMD3	87	55.102	Anolis_carolinensis
ENSCSAVG00000001120	-	97	55.102	ENSANAG00000026434	NMD3	88	55.102	Aotus_nancymaae
ENSCSAVG00000001120	-	97	54.318	ENSACLG00000015520	nmd3	87	54.318	Astatotilapia_calliptera
ENSCSAVG00000001120	-	97	54.318	ENSAMXG00000014415	nmd3	87	54.318	Astyanax_mexicanus
ENSCSAVG00000001120	-	97	55.102	ENSBTAG00000016228	NMD3	87	55.102	Bos_taurus
ENSCSAVG00000001120	-	99	47.921	WBGene00012030	T25G3.3	89	47.921	Caenorhabditis_elegans
ENSCSAVG00000001120	-	97	55.102	ENSCJAG00000002900	NMD3	86	55.102	Callithrix_jacchus
ENSCSAVG00000001120	-	97	54.875	ENSCAFG00000014352	NMD3	86	54.875	Canis_familiaris
ENSCSAVG00000001120	-	97	54.875	ENSCAFG00020021145	NMD3	87	54.875	Canis_lupus_dingo
ENSCSAVG00000001120	-	97	55.227	ENSCHIG00000016015	NMD3	87	55.227	Capra_hircus
ENSCSAVG00000001120	-	97	54.422	ENSTSYG00000002155	NMD3	87	54.422	Carlito_syrichta
ENSCSAVG00000001120	-	86	54.897	ENSCAPG00000017861	NMD3	90	54.897	Cavia_aperea
ENSCSAVG00000001120	-	86	55.670	ENSCPOG00000005953	NMD3	83	55.670	Cavia_porcellus
ENSCSAVG00000001120	-	97	54.875	ENSCCAG00000037460	NMD3	87	54.875	Cebus_capucinus
ENSCSAVG00000001120	-	97	55.102	ENSCATG00000030022	NMD3	87	55.102	Cercocebus_atys
ENSCSAVG00000001120	-	97	54.649	ENSCLAG00000003155	NMD3	87	54.649	Chinchilla_lanigera
ENSCSAVG00000001120	-	97	55.102	ENSCSAG00000012333	NMD3	87	55.102	Chlorocebus_sabaeus
ENSCSAVG00000001120	-	66	81.481	ENSCHOG00000001240	NMD3	60	81.481	Choloepus_hoffmanni
ENSCSAVG00000001120	-	97	53.968	ENSCPBG00000018318	NMD3	93	53.968	Chrysemys_picta_bellii
ENSCSAVG00000001120	-	99	87.778	ENSCING00000002129	-	89	87.778	Ciona_intestinalis
ENSCSAVG00000001120	-	90	53.808	ENSCANG00000042939	NMD3	80	53.808	Colobus_angolensis_palliatus
ENSCSAVG00000001120	-	97	47.846	ENSCGRG00001001792	Nmd3	92	47.846	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001120	-	97	54.649	ENSCGRG00000007947	Nmd3	88	54.649	Cricetulus_griseus_crigri
ENSCSAVG00000001120	-	97	54.091	ENSCSEG00000017954	nmd3	87	54.091	Cynoglossus_semilaevis
ENSCSAVG00000001120	-	97	50.457	ENSCVAG00000004672	nmd3	86	51.364	Cyprinodon_variegatus
ENSCSAVG00000001120	-	97	53.968	ENSDARG00000015676	nmd3	87	53.968	Danio_rerio
ENSCSAVG00000001120	-	97	55.102	ENSDNOG00000045222	NMD3	87	55.102	Dasypus_novemcinctus
ENSCSAVG00000001120	-	97	50.685	ENSDORG00000005716	Nmd3	87	50.685	Dipodomys_ordii
ENSCSAVG00000001120	-	98	49.220	FBgn0023542	Nmd3	86	49.220	Drosophila_melanogaster
ENSCSAVG00000001120	-	97	46.939	ENSETEG00000003168	NMD3	87	46.939	Echinops_telfairi
ENSCSAVG00000001120	-	98	53.483	ENSEBUG00000014316	nmd3	97	53.483	Eptatretus_burgeri
ENSCSAVG00000001120	-	97	54.422	ENSEASG00005018672	NMD3	87	54.422	Equus_asinus_asinus
ENSCSAVG00000001120	-	97	54.422	ENSECAG00000000188	NMD3	86	54.422	Equus_caballus
ENSCSAVG00000001120	-	96	38.710	ENSEEUG00000010642	-	92	38.710	Erinaceus_europaeus
ENSCSAVG00000001120	-	97	55.000	ENSELUG00000024123	nmd3	87	55.000	Esox_lucius
ENSCSAVG00000001120	-	99	54.241	ENSFCAG00000022867	NMD3	87	54.422	Felis_catus
ENSCSAVG00000001120	-	98	54.709	ENSFALG00000008711	NMD3	94	54.709	Ficedula_albicollis
ENSCSAVG00000001120	-	97	45.227	ENSFDAG00000012197	-	87	44.419	Fukomys_damarensis
ENSCSAVG00000001120	-	97	54.422	ENSFDAG00000013724	-	87	54.422	Fukomys_damarensis
ENSCSAVG00000001120	-	97	54.545	ENSFHEG00000000415	nmd3	87	54.545	Fundulus_heteroclitus
ENSCSAVG00000001120	-	97	55.656	ENSGMOG00000009675	nmd3	90	55.656	Gadus_morhua
ENSCSAVG00000001120	-	97	54.649	ENSGALG00000009533	NMD3	87	54.649	Gallus_gallus
ENSCSAVG00000001120	-	97	54.318	ENSGAFG00000012798	nmd3	83	54.318	Gambusia_affinis
ENSCSAVG00000001120	-	97	55.455	ENSGACG00000010028	nmd3	87	55.455	Gasterosteus_aculeatus
ENSCSAVG00000001120	-	97	53.288	ENSGAGG00000006556	NMD3	87	53.288	Gopherus_agassizii
ENSCSAVG00000001120	-	97	54.875	ENSGGOG00000007157	NMD3	87	54.875	Gorilla_gorilla
ENSCSAVG00000001120	-	98	44.344	ENSGGOG00000028590	-	87	42.760	Gorilla_gorilla
ENSCSAVG00000001120	-	97	54.318	ENSHBUG00000001781	nmd3	87	54.318	Haplochromis_burtoni
ENSCSAVG00000001120	-	97	44.091	ENSHGLG00000010477	-	85	43.764	Heterocephalus_glaber_female
ENSCSAVG00000001120	-	97	53.741	ENSHGLG00000014451	-	87	53.741	Heterocephalus_glaber_female
ENSCSAVG00000001120	-	97	43.964	ENSHGLG00100001042	-	85	43.636	Heterocephalus_glaber_male
ENSCSAVG00000001120	-	97	53.741	ENSHGLG00100006613	-	87	53.741	Heterocephalus_glaber_male
ENSCSAVG00000001120	-	97	54.773	ENSHCOG00000004292	nmd3	80	54.773	Hippocampus_comes
ENSCSAVG00000001120	-	97	53.636	ENSIPUG00000005073	nmd3	87	53.636	Ictalurus_punctatus
ENSCSAVG00000001120	-	97	54.649	ENSSTOG00000001899	NMD3	87	54.649	Ictidomys_tridecemlineatus
ENSCSAVG00000001120	-	97	54.422	ENSJJAG00000019759	Nmd3	90	54.422	Jaculus_jaculus
ENSCSAVG00000001120	-	98	54.831	ENSKMAG00000020427	nmd3	87	55.227	Kryptolebias_marmoratus
ENSCSAVG00000001120	-	97	54.853	ENSLBEG00000022216	nmd3	87	54.853	Labrus_bergylta
ENSCSAVG00000001120	-	97	53.759	ENSLACG00000005731	NMD3	87	57.292	Latimeria_chalumnae
ENSCSAVG00000001120	-	97	54.525	ENSLOCG00000003561	nmd3	87	54.525	Lepisosteus_oculatus
ENSCSAVG00000001120	-	97	54.751	ENSLAFG00000007231	NMD3	87	54.751	Loxodonta_africana
ENSCSAVG00000001120	-	97	54.875	ENSMFAG00000040934	NMD3	87	54.875	Macaca_fascicularis
ENSCSAVG00000001120	-	97	54.875	ENSMMUG00000009564	NMD3	95	50.662	Macaca_mulatta
ENSCSAVG00000001120	-	97	54.875	ENSMNEG00000034626	NMD3	87	54.875	Macaca_nemestrina
ENSCSAVG00000001120	-	96	53.793	ENSMLEG00000002741	NMD3	98	53.793	Mandrillus_leucophaeus
ENSCSAVG00000001120	-	97	55.000	ENSMAMG00000012427	nmd3	87	55.000	Mastacembelus_armatus
ENSCSAVG00000001120	-	97	54.318	ENSMZEG00005016888	nmd3	87	54.318	Maylandia_zebra
ENSCSAVG00000001120	-	97	54.649	ENSMGAG00000010498	NMD3	87	54.649	Meleagris_gallopavo
ENSCSAVG00000001120	-	97	54.649	ENSMAUG00000000633	Nmd3	87	54.649	Mesocricetus_auratus
ENSCSAVG00000001120	-	97	55.102	ENSMICG00000049196	NMD3	87	55.102	Microcebus_murinus
ENSCSAVG00000001120	-	97	55.102	ENSMOCG00000005180	Nmd3	88	55.102	Microtus_ochrogaster
ENSCSAVG00000001120	-	97	55.102	ENSMMOG00000012765	nmd3	87	55.102	Mola_mola
ENSCSAVG00000001120	-	75	56.940	ENSMODG00000016296	NMD3	88	45.175	Monodelphis_domestica
ENSCSAVG00000001120	-	97	54.091	ENSMALG00000009256	nmd3	87	54.091	Monopterus_albus
ENSCSAVG00000001120	-	97	53.741	MGP_CAROLIEiJ_G0025069	Nmd3	87	53.741	Mus_caroli
ENSCSAVG00000001120	-	97	53.968	ENSMUSG00000027787	Nmd3	87	53.968	Mus_musculus
ENSCSAVG00000001120	-	97	54.422	MGP_PahariEiJ_G0026512	Nmd3	87	54.422	Mus_pahari
ENSCSAVG00000001120	-	97	53.741	MGP_SPRETEiJ_G0026011	Nmd3	87	53.741	Mus_spretus
ENSCSAVG00000001120	-	97	55.102	ENSMPUG00000002955	NMD3	87	55.102	Mustela_putorius_furo
ENSCSAVG00000001120	-	97	52.370	ENSMLUG00000000701	NMD3	87	52.370	Myotis_lucifugus
ENSCSAVG00000001120	-	97	54.875	ENSNGAG00000012307	Nmd3	87	54.875	Nannospalax_galili
ENSCSAVG00000001120	-	97	54.091	ENSNBRG00000003324	nmd3	87	54.091	Neolamprologus_brichardi
ENSCSAVG00000001120	-	97	54.875	ENSNLEG00000004655	NMD3	95	50.662	Nomascus_leucogenys
ENSCSAVG00000001120	-	79	50.877	ENSOPRG00000007690	-	71	50.877	Ochotona_princeps
ENSCSAVG00000001120	-	97	54.422	ENSODEG00000006270	NMD3	89	54.422	Octodon_degus
ENSCSAVG00000001120	-	97	55.000	ENSONIG00000003643	nmd3	87	55.000	Oreochromis_niloticus
ENSCSAVG00000001120	-	97	54.875	ENSOCUG00000017454	NMD3	88	54.875	Oryctolagus_cuniculus
ENSCSAVG00000001120	-	97	54.773	ENSORLG00000006279	nmd3	87	54.773	Oryzias_latipes
ENSCSAVG00000001120	-	97	54.773	ENSORLG00020003843	nmd3	87	54.773	Oryzias_latipes_hni
ENSCSAVG00000001120	-	97	54.670	ENSORLG00015006379	nmd3	87	54.670	Oryzias_latipes_hsok
ENSCSAVG00000001120	-	97	54.773	ENSOMEG00000012144	nmd3	87	54.773	Oryzias_melastigma
ENSCSAVG00000001120	-	97	54.875	ENSOGAG00000014910	NMD3	87	54.875	Otolemur_garnettii
ENSCSAVG00000001120	-	97	55.204	ENSOARG00000001883	NMD3	86	55.204	Ovis_aries
ENSCSAVG00000001120	-	97	54.649	ENSPPAG00000043829	NMD3	87	54.649	Pan_paniscus
ENSCSAVG00000001120	-	97	54.422	ENSPPRG00000000724	NMD3	86	54.422	Panthera_pardus
ENSCSAVG00000001120	-	97	54.195	ENSPTIG00000016761	NMD3	87	54.195	Panthera_tigris_altaica
ENSCSAVG00000001120	-	97	54.875	ENSPTRG00000015586	NMD3	87	54.875	Pan_troglodytes
ENSCSAVG00000001120	-	97	55.102	ENSPANG00000006665	NMD3	83	55.102	Papio_anubis
ENSCSAVG00000001120	-	97	52.955	ENSPKIG00000009928	nmd3	87	52.955	Paramormyrops_kingsleyae
ENSCSAVG00000001120	-	97	53.288	ENSPSIG00000007591	NMD3	87	53.288	Pelodiscus_sinensis
ENSCSAVG00000001120	-	97	52.045	ENSPMGG00000014015	nmd3	87	52.045	Periophthalmus_magnuspinnatus
ENSCSAVG00000001120	-	97	54.422	ENSPEMG00000021880	Nmd3	88	54.422	Peromyscus_maniculatus_bairdii
ENSCSAVG00000001120	-	97	55.556	ENSPCIG00000020869	NMD3	88	57.002	Phascolarctos_cinereus
ENSCSAVG00000001120	-	97	54.545	ENSPFOG00000012103	nmd3	87	54.545	Poecilia_formosa
ENSCSAVG00000001120	-	97	54.545	ENSPLAG00000008087	nmd3	87	54.545	Poecilia_latipinna
ENSCSAVG00000001120	-	97	54.545	ENSPMEG00000008506	nmd3	87	54.545	Poecilia_mexicana
ENSCSAVG00000001120	-	97	54.318	ENSPREG00000001848	nmd3	87	54.318	Poecilia_reticulata
ENSCSAVG00000001120	-	97	54.649	ENSPPYG00000014263	NMD3	87	54.649	Pongo_abelii
ENSCSAVG00000001120	-	90	46.192	ENSPCAG00000009851	NMD3	88	45.813	Procavia_capensis
ENSCSAVG00000001120	-	81	69.231	ENSPVAG00000003301	NMD3	72	69.231	Pteropus_vampyrus
ENSCSAVG00000001120	-	97	54.318	ENSPNYG00000006778	nmd3	87	54.318	Pundamilia_nyererei
ENSCSAVG00000001120	-	97	54.773	ENSPNAG00000009442	nmd3	87	54.773	Pygocentrus_nattereri
ENSCSAVG00000001120	-	97	54.875	ENSRNOG00000009310	Nmd3	87	54.875	Rattus_norvegicus
ENSCSAVG00000001120	-	97	49.887	ENSRBIG00000040379	NMD3	87	49.887	Rhinopithecus_bieti
ENSCSAVG00000001120	-	97	54.422	ENSRROG00000036181	NMD3	87	54.422	Rhinopithecus_roxellana
ENSCSAVG00000001120	-	98	40.638	YHR170W	NMD3	88	40.851	Saccharomyces_cerevisiae
ENSCSAVG00000001120	-	97	54.649	ENSSBOG00000024021	NMD3	87	54.649	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001120	-	97	51.020	ENSSHAG00000016044	NMD3	87	51.020	Sarcophilus_harrisii
ENSCSAVG00000001120	-	97	53.864	ENSSFOG00015003609	nmd3	87	53.864	Scleropages_formosus
ENSCSAVG00000001120	-	97	54.318	ENSSMAG00000012887	nmd3	87	54.318	Scophthalmus_maximus
ENSCSAVG00000001120	-	97	54.773	ENSSDUG00000023721	nmd3	87	54.773	Seriola_dumerili
ENSCSAVG00000001120	-	97	54.318	ENSSLDG00000006565	nmd3	87	54.318	Seriola_lalandi_dorsalis
ENSCSAVG00000001120	-	97	54.195	ENSSARG00000010402	NMD3	90	54.195	Sorex_araneus
ENSCSAVG00000001120	-	97	53.741	ENSSPUG00000018791	NMD3	95	53.563	Sphenodon_punctatus
ENSCSAVG00000001120	-	97	54.545	ENSSPAG00000014328	nmd3	87	54.545	Stegastes_partitus
ENSCSAVG00000001120	-	97	55.329	ENSSSCG00000022952	NMD3	87	55.329	Sus_scrofa
ENSCSAVG00000001120	-	98	54.484	ENSTGUG00000011140	-	88	54.484	Taeniopygia_guttata
ENSCSAVG00000001120	-	98	54.260	ENSTGUG00000015141	-	97	54.260	Taeniopygia_guttata
ENSCSAVG00000001120	-	97	54.318	ENSTRUG00000005958	nmd3	87	54.318	Takifugu_rubripes
ENSCSAVG00000001120	-	97	38.409	ENSTBEG00000011783	-	87	38.409	Tupaia_belangeri
ENSCSAVG00000001120	-	97	48.980	ENSTTRG00000012938	NMD3	87	48.980	Tursiops_truncatus
ENSCSAVG00000001120	-	78	56.447	ENSUAMG00000009305	-	86	56.447	Ursus_americanus
ENSCSAVG00000001120	-	97	54.649	ENSUMAG00000011070	NMD3	88	54.649	Ursus_maritimus
ENSCSAVG00000001120	-	97	55.000	ENSVPAG00000008779	NMD3	87	55.000	Vicugna_pacos
ENSCSAVG00000001120	-	97	54.875	ENSVVUG00000023055	NMD3	88	54.875	Vulpes_vulpes
ENSCSAVG00000001120	-	97	55.102	ENSXETG00000027727	nmd3	87	55.102	Xenopus_tropicalis
ENSCSAVG00000001120	-	97	54.545	ENSXMAG00000018406	nmd3	87	54.545	Xiphophorus_maculatus