EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000001493 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 24098 bases
Position: chrreftig_37:290382-314479
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000002532	dsrm	PF00035.26	5.2e-23	1	2
ENSCSAVP00000002532	dsrm	PF00035.26	5.2e-23	2	2
ENSCSAVP00000002531	dsrm	PF00035.26	7.1e-23	1	2
ENSCSAVP00000002531	dsrm	PF00035.26	7.1e-23	2	2
ENSCSAVP00000002530	dsrm	PF00035.26	7.4e-23	1	2
ENSCSAVP00000002530	dsrm	PF00035.26	7.4e-23	2	2
ENSCSAVP00000002529	dsrm	PF00035.26	7.9e-10	1	1
ENSCSAVP00000002529	DEAD	PF00270.29	4.3e-09	1	1
ENSCSAVP00000002532	DEAD	PF00270.29	4.4e-09	1	1
ENSCSAVP00000002530	DEAD	PF00270.29	5e-09	1	1
ENSCSAVP00000002531	DEAD	PF00270.29	5.5e-09	1	1
ENSCSAVP00000002532	HA2	PF04408.23	2.9e-15	1	1
ENSCSAVP00000002530	HA2	PF04408.23	3.4e-15	1	1
ENSCSAVP00000002531	HA2	PF04408.23	3.5e-15	1	1
ENSCSAVP00000002529	HA2	PF04408.23	3.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000002572	-	3693	-	ENSCSAVP00000002531	1231 (aa)	-	H2YB33
ENSCSAVT00000002573	-	3210	-	ENSCSAVP00000002532	1069 (aa)	-	H2YB34
ENSCSAVT00000002570	-	3222	-	ENSCSAVP00000002529	1074 (aa)	-	H2YB31
ENSCSAVT00000002571	-	3429	-	ENSCSAVP00000002530	1143 (aa)	-	H2YB32

Gene Model

Click here to download ENSCSAVG00000001493's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001493's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001493	-	51	42.786	ENSCSAVG00000001117	-	94	42.000
ENSCSAVG00000001493	-	51	32.149	ENSCSAVG00000003870	-	59	38.500
ENSCSAVG00000001493	-	64	48.352	ENSCSAVG00000008110	-	98	36.823
ENSCSAVG00000001493	-	61	32.084	ENSCSAVG00000002918	-	54	33.387
ENSCSAVG00000001493	-	59	31.455	ENSCSAVG00000009685	-	83	38.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001493	-	100	61.005	ENSG00000135829	DHX9	94	59.655	Homo_sapiens
ENSCSAVG00000001493	-	100	60.858	ENSAMEG00000002233	DHX9	94	59.770	Ailuropoda_melanoleuca
ENSCSAVG00000001493	-	97	67.073	ENSACIG00000016431	dhx9	95	58.434	Amphilophus_citrinellus
ENSCSAVG00000001493	-	96	62.536	ENSAOCG00000010719	dhx9	96	63.208	Amphiprion_ocellaris
ENSCSAVG00000001493	-	100	62.165	ENSAPEG00000006339	dhx9	93	59.416	Amphiprion_percula
ENSCSAVG00000001493	-	97	67.073	ENSATEG00000007101	dhx9	100	59.882	Anabas_testudineus
ENSCSAVG00000001493	-	100	60.529	ENSACAG00000005023	DHX9	95	59.524	Anolis_carolinensis
ENSCSAVG00000001493	-	100	60.913	ENSANAG00000030279	DHX9	94	59.671	Aotus_nancymaae
ENSCSAVG00000001493	-	100	60.377	ENSACLG00000022296	dhx9	99	59.915	Astatotilapia_calliptera
ENSCSAVG00000001493	-	100	60.636	ENSBTAG00000019821	DHX9	92	59.851	Bos_taurus
ENSCSAVG00000001493	-	99	43.270	WBGene00004355	rha-1	89	43.273	Caenorhabditis_elegans
ENSCSAVG00000001493	-	100	60.822	ENSCJAG00000004821	DHX9	93	61.499	Callithrix_jacchus
ENSCSAVG00000001493	-	100	60.675	ENSCAFG00000013205	DHX9	94	59.672	Canis_familiaris
ENSCSAVG00000001493	-	100	60.675	ENSCAFG00020014886	DHX9	94	59.672	Canis_lupus_dingo
ENSCSAVG00000001493	-	100	59.890	ENSCHIG00000018643	DHX9	94	58.272	Capra_hircus
ENSCSAVG00000001493	-	100	60.584	ENSTSYG00000007970	DHX9	100	59.607	Carlito_syrichta
ENSCSAVG00000001493	-	80	64.530	ENSCAPG00000015604	DHX9	74	62.162	Cavia_aperea
ENSCSAVG00000001493	-	100	61.035	ENSCPOG00000040669	DHX9	88	59.869	Cavia_porcellus
ENSCSAVG00000001493	-	91	61.358	ENSCCAG00000022597	DHX9	93	61.494	Cebus_capucinus
ENSCSAVG00000001493	-	100	61.005	ENSCATG00000027871	DHX9	99	62.181	Cercocebus_atys
ENSCSAVG00000001493	-	100	61.182	ENSCLAG00000010684	DHX9	87	60.230	Chinchilla_lanigera
ENSCSAVG00000001493	-	88	64.248	ENSCSAG00000012549	DHX9	91	62.162	Chlorocebus_sabaeus
ENSCSAVG00000001493	-	100	53.522	ENSCHOG00000012736	DHX9	99	53.728	Choloepus_hoffmanni
ENSCSAVG00000001493	-	100	61.167	ENSCPBG00000015757	DHX9	94	60.049	Chrysemys_picta_bellii
ENSCSAVG00000001493	-	54	85.185	ENSCING00000007792	-	100	85.434	Ciona_intestinalis
ENSCSAVG00000001493	-	100	61.005	ENSCANG00000032888	DHX9	93	61.331	Colobus_angolensis_palliatus
ENSCSAVG00000001493	-	100	60.747	ENSCGRG00001015796	Dhx9	98	59.539	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001493	-	100	60.747	ENSCGRG00000011336	Dhx9	89	59.539	Cricetulus_griseus_crigri
ENSCSAVG00000001493	-	99	61.896	ENSCSEG00000017621	dhx9	99	59.478	Cynoglossus_semilaevis
ENSCSAVG00000001493	-	91	67.568	ENSCVAG00000009479	dhx9	97	58.048	Cyprinodon_variegatus
ENSCSAVG00000001493	-	100	60.980	ENSDARG00000079725	dhx9	95	59.787	Danio_rerio
ENSCSAVG00000001493	-	100	61.060	ENSDNOG00000004038	DHX9	94	60.000	Dasypus_novemcinctus
ENSCSAVG00000001493	-	100	61.076	ENSDORG00000012610	Dhx9	87	59.180	Dipodomys_ordii
ENSCSAVG00000001493	-	99	52.909	FBgn0002774	mle	92	52.995	Drosophila_melanogaster
ENSCSAVG00000001493	-	90	60.976	ENSETEG00000009729	DHX9	82	60.976	Echinops_telfairi
ENSCSAVG00000001493	-	82	58.830	ENSEBUG00000015945	-	91	56.212	Eptatretus_burgeri
ENSCSAVG00000001493	-	100	61.096	ENSEASG00005006589	DHX9	93	59.770	Equus_asinus_asinus
ENSCSAVG00000001493	-	100	61.096	ENSECAG00000011933	DHX9	95	59.770	Equus_caballus
ENSCSAVG00000001493	-	88	64.516	ENSEEUG00000004824	DHX9	76	66.667	Erinaceus_europaeus
ENSCSAVG00000001493	-	97	65.854	ENSELUG00000010512	dhx9	96	58.891	Esox_lucius
ENSCSAVG00000001493	-	100	60.893	ENSFCAG00000019306	DHX9	96	58.748	Felis_catus
ENSCSAVG00000001493	-	97	60.264	ENSFALG00000002992	DHX9	96	58.397	Ficedula_albicollis
ENSCSAVG00000001493	-	100	61.146	ENSFDAG00000011454	DHX9	100	59.733	Fukomys_damarensis
ENSCSAVG00000001493	-	100	61.865	ENSGAGG00000024443	DHX9	95	60.619	Gopherus_agassizii
ENSCSAVG00000001493	-	100	61.005	ENSGGOG00000013533	DHX9	94	59.655	Gorilla_gorilla
ENSCSAVG00000001493	-	98	50.142	ENSGGOG00000040887	-	95	48.957	Gorilla_gorilla
ENSCSAVG00000001493	-	100	60.377	ENSHBUG00000004129	dhx9	95	58.910	Haplochromis_burtoni
ENSCSAVG00000001493	-	100	61.384	ENSHGLG00000005769	DHX9	88	60.000	Heterocephalus_glaber_female
ENSCSAVG00000001493	-	100	61.566	ENSHGLG00100015628	DHX9	84	60.000	Heterocephalus_glaber_male
ENSCSAVG00000001493	-	100	56.339	ENSHCOG00000012968	dhx9	97	56.913	Hippocampus_comes
ENSCSAVG00000001493	-	100	59.619	ENSIPUG00000016675	dhx9	93	58.429	Ictalurus_punctatus
ENSCSAVG00000001493	-	100	61.349	ENSSTOG00000016288	DHX9	90	60.328	Ictidomys_tridecemlineatus
ENSCSAVG00000001493	-	100	60.802	ENSJJAG00000003249	Dhx9	87	59.128	Jaculus_jaculus
ENSCSAVG00000001493	-	99	44.334	ENSLACG00000017767	DHX9	96	45.900	Latimeria_chalumnae
ENSCSAVG00000001493	-	100	59.659	ENSLOCG00000002158	dhx9	96	59.429	Lepisosteus_oculatus
ENSCSAVG00000001493	-	100	60.858	ENSLAFG00000022058	DHX9	98	58.140	Loxodonta_africana
ENSCSAVG00000001493	-	100	61.005	ENSMFAG00000041152	DHX9	99	62.181	Macaca_fascicularis
ENSCSAVG00000001493	-	100	61.005	ENSMMUG00000005635	DHX9	94	59.573	Macaca_mulatta
ENSCSAVG00000001493	-	100	61.005	ENSMNEG00000041195	DHX9	94	59.573	Macaca_nemestrina
ENSCSAVG00000001493	-	100	61.005	ENSMLEG00000039925	DHX9	100	58.883	Mandrillus_leucophaeus
ENSCSAVG00000001493	-	100	59.818	ENSMAMG00000018644	dhx9	100	59.155	Mastacembelus_armatus
ENSCSAVG00000001493	-	100	60.377	ENSMZEG00005014167	dhx9	95	58.991	Maylandia_zebra
ENSCSAVG00000001493	-	100	60.838	ENSMAUG00000020414	Dhx9	87	59.442	Mesocricetus_auratus
ENSCSAVG00000001493	-	100	60.639	ENSMICG00000008285	DHX9	93	61.609	Microcebus_murinus
ENSCSAVG00000001493	-	100	60.747	ENSMOCG00000019404	Dhx9	86	59.802	Microtus_ochrogaster
ENSCSAVG00000001493	-	99	57.477	ENSMMOG00000001268	dhx9	97	57.708	Mola_mola
ENSCSAVG00000001493	-	100	60.711	ENSMODG00000006955	DHX9	97	58.738	Monodelphis_domestica
ENSCSAVG00000001493	-	100	60.467	ENSMALG00000000318	dhx9	100	59.598	Monopterus_albus
ENSCSAVG00000001493	-	100	61.020	MGP_CAROLIEiJ_G0014709	Dhx9	100	59.363	Mus_caroli
ENSCSAVG00000001493	-	100	60.985	ENSMUSG00000042699	Dhx9	100	59.600	Mus_musculus
ENSCSAVG00000001493	-	100	61.020	MGP_SPRETEiJ_G0015516	Dhx9	98	65.306	Mus_spretus
ENSCSAVG00000001493	-	100	60.802	ENSMPUG00000011544	DHX9	98	59.900	Mustela_putorius_furo
ENSCSAVG00000001493	-	100	59.580	ENSMLUG00000011163	DHX9	95	57.933	Myotis_lucifugus
ENSCSAVG00000001493	-	100	60.913	ENSNLEG00000018013	DHX9	94	59.573	Nomascus_leucogenys
ENSCSAVG00000001493	-	63	69.312	ENSMEUG00000001470	-	62	69.312	Notamacropus_eugenii
ENSCSAVG00000001493	-	91	72.222	ENSOPRG00000016111	DHX9	87	72.222	Ochotona_princeps
ENSCSAVG00000001493	-	100	60.737	ENSODEG00000012659	DHX9	88	59.431	Octodon_degus
ENSCSAVG00000001493	-	100	60.018	ENSONIG00000000293	dhx9	95	58.327	Oreochromis_niloticus
ENSCSAVG00000001493	-	100	60.639	ENSOANG00000000989	DHX9	94	59.704	Ornithorhynchus_anatinus
ENSCSAVG00000001493	-	100	61.314	ENSOCUG00000014651	DHX9	95	60.066	Oryctolagus_cuniculus
ENSCSAVG00000001493	-	97	65.854	ENSORLG00000007454	dhx9	94	58.962	Oryzias_latipes
ENSCSAVG00000001493	-	97	65.854	ENSORLG00020015369	dhx9	98	58.958	Oryzias_latipes_hni
ENSCSAVG00000001493	-	97	65.854	ENSORLG00015000892	dhx9	95	58.862	Oryzias_latipes_hsok
ENSCSAVG00000001493	-	100	61.066	ENSOMEG00000002437	dhx9	99	60.050	Oryzias_melastigma
ENSCSAVG00000001493	-	100	60.109	ENSOGAG00000002620	DHX9	94	59.080	Otolemur_garnettii
ENSCSAVG00000001493	-	97	63.979	ENSOARG00000019089	DHX9	92	60.099	Ovis_aries
ENSCSAVG00000001493	-	100	61.005	ENSPPAG00000030190	DHX9	99	62.181	Pan_paniscus
ENSCSAVG00000001493	-	100	60.985	ENSPPRG00000005890	DHX9	94	59.671	Panthera_pardus
ENSCSAVG00000001493	-	100	60.985	ENSPTIG00000021059	DHX9	94	59.671	Panthera_tigris_altaica
ENSCSAVG00000001493	-	100	61.005	ENSPTRG00000001759	DHX9	94	59.655	Pan_troglodytes
ENSCSAVG00000001493	-	100	61.005	ENSPANG00000012826	DHX9	94	59.573	Papio_anubis
ENSCSAVG00000001493	-	100	60.874	ENSPKIG00000006698	dhx9	98	58.054	Paramormyrops_kingsleyae
ENSCSAVG00000001493	-	100	61.167	ENSPSIG00000006241	DHX9	94	59.802	Pelodiscus_sinensis
ENSCSAVG00000001493	-	100	61.861	ENSPMGG00000009280	dhx9	95	60.000	Periophthalmus_magnuspinnatus
ENSCSAVG00000001493	-	100	60.747	ENSPEMG00000001238	Dhx9	87	59.638	Peromyscus_maniculatus_bairdii
ENSCSAVG00000001493	-	100	60.675	ENSPCIG00000003716	DHX9	99	59.622	Phascolarctos_cinereus
ENSCSAVG00000001493	-	100	60.688	ENSPFOG00000019152	-	99	60.922	Poecilia_formosa
ENSCSAVG00000001493	-	100	60.598	ENSPLAG00000001496	dhx9	98	59.788	Poecilia_latipinna
ENSCSAVG00000001493	-	100	60.326	ENSPMEG00000019991	dhx9	98	60.751	Poecilia_mexicana
ENSCSAVG00000001493	-	97	67.073	ENSPREG00000019307	dhx9	99	59.411	Poecilia_reticulata
ENSCSAVG00000001493	-	100	61.005	ENSPPYG00000000431	DHX9	94	59.655	Pongo_abelii
ENSCSAVG00000001493	-	92	66.007	ENSPCAG00000011042	DHX9	88	58.252	Procavia_capensis
ENSCSAVG00000001493	-	100	60.731	ENSPCOG00000018029	DHX9	97	58.193	Propithecus_coquereli
ENSCSAVG00000001493	-	100	60.346	ENSPVAG00000000836	DHX9	94	59.278	Pteropus_vampyrus
ENSCSAVG00000001493	-	100	61.187	ENSPNYG00000008480	dhx9	95	58.799	Pundamilia_nyererei
ENSCSAVG00000001493	-	100	61.217	ENSPNAG00000021343	dhx9	94	59.983	Pygocentrus_nattereri
ENSCSAVG00000001493	-	100	60.929	ENSRNOG00000002735	Dhx9	99	60.320	Rattus_norvegicus
ENSCSAVG00000001493	-	100	60.913	ENSRBIG00000041202	DHX9	94	59.491	Rhinopithecus_bieti
ENSCSAVG00000001493	-	100	60.913	ENSRROG00000044740	DHX9	94	59.491	Rhinopithecus_roxellana
ENSCSAVG00000001493	-	100	59.269	ENSSBOG00000026174	DHX9	94	58.059	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001493	-	100	60.474	ENSSHAG00000008540	DHX9	99	59.737	Sarcophilus_harrisii
ENSCSAVG00000001493	-	100	59.982	ENSSFOG00015017378	dhx9	96	59.204	Scleropages_formosus
ENSCSAVG00000001493	-	97	65.854	ENSSDUG00000017407	dhx9	100	59.596	Seriola_dumerili
ENSCSAVG00000001493	-	100	61.724	ENSSLDG00000003926	dhx9	98	60.137	Seriola_lalandi_dorsalis
ENSCSAVG00000001493	-	91	61.392	ENSSARG00000003931	DHX9	91	61.377	Sorex_araneus
ENSCSAVG00000001493	-	100	60.346	ENSSPUG00000003934	DHX9	95	59.510	Sphenodon_punctatus
ENSCSAVG00000001493	-	100	61.624	ENSSPAG00000009690	dhx9	93	59.211	Stegastes_partitus
ENSCSAVG00000001493	-	100	61.045	ENSSSCG00000026806	DHX9	86	59.344	Sus_scrofa
ENSCSAVG00000001493	-	79	57.339	ENSTGUG00000004038	-	100	57.889	Taeniopygia_guttata
ENSCSAVG00000001493	-	83	62.222	ENSTBEG00000014052	DHX9	70	62.222	Tupaia_belangeri
ENSCSAVG00000001493	-	100	59.033	ENSTTRG00000007665	DHX9	99	58.191	Tursiops_truncatus
ENSCSAVG00000001493	-	100	62.092	ENSUAMG00000012201	DHX9	100	60.000	Ursus_americanus
ENSCSAVG00000001493	-	100	60.858	ENSUMAG00000016482	DHX9	94	59.770	Ursus_maritimus
ENSCSAVG00000001493	-	99	58.501	ENSVPAG00000008097	DHX9	86	58.808	Vicugna_pacos
ENSCSAVG00000001493	-	100	60.675	ENSVVUG00000008915	DHX9	94	59.672	Vulpes_vulpes
ENSCSAVG00000001493	-	100	60.925	ENSXETG00000012515	dhx9	95	59.638	Xenopus_tropicalis
ENSCSAVG00000001493	-	100	60.598	ENSXMAG00000011305	dhx9	97	59.739	Xiphophorus_maculatus