EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000001787 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 20160 bases
Position: chrreftig_37:472748-492907
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003009	GTP_EFTU	PF00009.27	5.2e-61	1	1
ENSCSAVP00000003007	GTP_EFTU	PF00009.27	1.3e-60	1	1
ENSCSAVP00000003008	GTP_EFTU	PF00009.27	1.8e-60	1	1
ENSCSAVP00000003002	GTP_EFTU	PF00009.27	1.9e-60	1	1
ENSCSAVP00000003000	GTP_EFTU	PF00009.27	2e-60	1	1
ENSCSAVP00000003004	GTP_EFTU	PF00009.27	2.1e-60	1	1
ENSCSAVP00000003001	GTP_EFTU	PF00009.27	2.2e-60	1	1
ENSCSAVP00000003005	GTP_EFTU	PF00009.27	2.7e-60	1	1
ENSCSAVP00000003006	GTP_EFTU	PF00009.27	8e-60	1	1
ENSCSAVP00000003003	GTP_EFTU	PF00009.27	5.7e-37	1	1
ENSCSAVP00000003007	GTP_EFTU_D2	PF03144.25	9.3e-13	1	1
ENSCSAVP00000003008	GTP_EFTU_D2	PF03144.25	9.3e-13	1	1
ENSCSAVP00000003006	GTP_EFTU_D2	PF03144.25	1.2e-12	1	1
ENSCSAVP00000003002	GTP_EFTU_D2	PF03144.25	1.3e-12	1	1
ENSCSAVP00000003001	GTP_EFTU_D2	PF03144.25	1.4e-12	1	1
ENSCSAVP00000003004	GTP_EFTU_D2	PF03144.25	1.5e-12	1	1
ENSCSAVP00000003009	GTP_EFTU_D2	PF03144.25	1.7e-12	1	1
ENSCSAVP00000003005	GTP_EFTU_D2	PF03144.25	2.6e-12	1	1
ENSCSAVP00000003003	GTP_EFTU_D2	PF03144.25	8.4e-12	1	1
ENSCSAVP00000003000	GTP_EFTU_D2	PF03144.25	9e-12	1	1
ENSCSAVP00000003009	EFG_IV	PF03764.18	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003045	-	3426	-	ENSCSAVP00000003000	1103 (aa)	-	H2YCF2
ENSCSAVT00000003047	-	3249	-	ENSCSAVP00000003002	1054 (aa)	-	H2YCF4
ENSCSAVT00000003046	-	3210	-	ENSCSAVP00000003001	1042 (aa)	-	H2YCF3
ENSCSAVT00000003052	-	3201	-	ENSCSAVP00000003007	1067 (aa)	-	H2YCF9
ENSCSAVT00000003053	-	3177	-	ENSCSAVP00000003008	1059 (aa)	-	H2YCG0
ENSCSAVT00000003050	-	3358	-	ENSCSAVP00000003005	1104 (aa)	-	H2YCF7
ENSCSAVT00000003051	-	2919	-	ENSCSAVP00000003006	972 (aa)	-	H2YCF8
ENSCSAVT00000003049	-	3068	-	ENSCSAVP00000003004	999 (aa)	-	H2YCF6
ENSCSAVT00000003048	-	3230	-	ENSCSAVP00000003003	1053 (aa)	-	H2YCF5
ENSCSAVT00000003054	-	2481	-	ENSCSAVP00000003009	781 (aa)	-	H2YCG1

Gene Model

Click here to download ENSCSAVG00000001787's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001787's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001787	-	99	31.553	ENSCSAVG00000004985	-	98	30.024
ENSCSAVG00000001787	-	77	40.580	ENSCSAVG00000008514	-	77	40.580
ENSCSAVG00000001787	-	99	35.970	ENSCSAVG00000003974	-	93	51.852

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001787	-	99	62.156	ENSG00000140598	EFL1	97	66.574	Homo_sapiens
ENSCSAVG00000001787	-	100	55.614	ENSAPOG00000000188	efl1	100	55.711	Acanthochromis_polyacanthus
ENSCSAVG00000001787	-	99	61.697	ENSAMEG00000006031	EFL1	94	62.615	Ailuropoda_melanoleuca
ENSCSAVG00000001787	-	100	56.128	ENSACIG00000017802	efl1	100	56.483	Amphilophus_citrinellus
ENSCSAVG00000001787	-	100	56.455	ENSAOCG00000023933	efl1	99	59.633	Amphiprion_ocellaris
ENSCSAVG00000001787	-	100	56.310	ENSAPEG00000000262	efl1	100	56.484	Amphiprion_percula
ENSCSAVG00000001787	-	96	64.932	ENSATEG00000012373	efl1	99	64.917	Anabas_testudineus
ENSCSAVG00000001787	-	99	60.739	ENSAPLG00000011147	EFL1	99	56.991	Anas_platyrhynchos
ENSCSAVG00000001787	-	100	56.004	ENSACAG00000011040	EFL1	100	56.004	Anolis_carolinensis
ENSCSAVG00000001787	-	99	62.385	ENSANAG00000027459	EFL1	94	63.303	Aotus_nancymaae
ENSCSAVG00000001787	-	100	55.615	ENSACLG00000025780	efl1	99	59.174	Astatotilapia_calliptera
ENSCSAVG00000001787	-	99	62.443	ENSAMXG00000019529	efl1	99	61.951	Astyanax_mexicanus
ENSCSAVG00000001787	-	99	62.844	ENSBTAG00000003410	EFL1	94	63.761	Bos_taurus
ENSCSAVG00000001787	-	86	54.237	WBGene00010732	K10C3.5	98	54.237	Caenorhabditis_elegans
ENSCSAVG00000001787	-	89	79.200	ENSCJAG00000015607	-	93	79.365	Callithrix_jacchus
ENSCSAVG00000001787	-	99	62.156	ENSCAFG00000013671	EFL1	100	56.381	Canis_familiaris
ENSCSAVG00000001787	-	99	62.844	ENSCHIG00000001883	EFL1	94	63.761	Capra_hircus
ENSCSAVG00000001787	-	100	56.300	ENSTSYG00000000348	EFL1	100	57.685	Carlito_syrichta
ENSCSAVG00000001787	-	100	48.249	ENSCAPG00000017944	EFL1	95	59.048	Cavia_aperea
ENSCSAVG00000001787	-	100	56.316	ENSCPOG00000001924	EFL1	100	56.754	Cavia_porcellus
ENSCSAVG00000001787	-	99	62.385	ENSCCAG00000034450	EFL1	100	57.381	Cebus_capucinus
ENSCSAVG00000001787	-	52	43.151	ENSCATG00000030744	-	90	49.023	Cercocebus_atys
ENSCSAVG00000001787	-	99	61.927	ENSCATG00000031678	-	94	62.615	Cercocebus_atys
ENSCSAVG00000001787	-	100	55.769	ENSCLAG00000010155	EFL1	82	77.215	Chinchilla_lanigera
ENSCSAVG00000001787	-	99	60.780	ENSCSAG00000015165	EFL1	95	62.385	Chlorocebus_sabaeus
ENSCSAVG00000001787	-	67	79.545	ENSCHOG00000014029	EFL1	63	79.545	Choloepus_hoffmanni
ENSCSAVG00000001787	-	100	75.000	ENSCPBG00000017638	EFL1	92	75.000	Chrysemys_picta_bellii
ENSCSAVG00000001787	-	99	62.156	ENSCANG00000038093	EFL1	94	62.844	Colobus_angolensis_palliatus
ENSCSAVG00000001787	-	100	55.107	ENSCGRG00001010826	Efl1	100	53.590	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001787	-	99	61.239	ENSCGRG00000003273	Efl1	94	62.156	Cricetulus_griseus_crigri
ENSCSAVG00000001787	-	99	54.956	ENSCSEG00000005856	efl1	99	59.633	Cynoglossus_semilaevis
ENSCSAVG00000001787	-	97	55.416	ENSCVAG00000011863	efl1	95	56.215	Cyprinodon_variegatus
ENSCSAVG00000001787	-	99	62.014	ENSDARG00000079672	efl1	98	60.870	Danio_rerio
ENSCSAVG00000001787	-	99	61.697	ENSDNOG00000006097	EFL1	94	62.844	Dasypus_novemcinctus
ENSCSAVG00000001787	-	99	61.697	ENSDORG00000000719	Efl1	94	62.615	Dipodomys_ordii
ENSCSAVG00000001787	-	99	49.521	FBgn0053158	CG33158	99	49.760	Drosophila_melanogaster
ENSCSAVG00000001787	-	91	57.910	ENSETEG00000004309	EFL1	94	59.322	Echinops_telfairi
ENSCSAVG00000001787	-	87	61.647	ENSEBUG00000010738	efl1	100	61.682	Eptatretus_burgeri
ENSCSAVG00000001787	-	99	62.385	ENSEASG00005007108	EFL1	100	57.394	Equus_asinus_asinus
ENSCSAVG00000001787	-	94	60.574	ENSECAG00000016354	EFL1	94	61.619	Equus_caballus
ENSCSAVG00000001787	-	69	60.511	ENSEEUG00000006326	EFL1	74	60.511	Erinaceus_europaeus
ENSCSAVG00000001787	-	100	52.595	ENSELUG00000002520	efl1	99	67.119	Esox_lucius
ENSCSAVG00000001787	-	99	63.761	ENSFCAG00000007741	EFL1	94	63.761	Felis_catus
ENSCSAVG00000001787	-	98	75.000	ENSFALG00000011103	EFL1	94	63.303	Ficedula_albicollis
ENSCSAVG00000001787	-	100	55.585	ENSFDAG00000009023	EFL1	84	77.215	Fukomys_damarensis
ENSCSAVG00000001787	-	100	56.150	ENSFHEG00000017795	efl1	98	59.174	Fundulus_heteroclitus
ENSCSAVG00000001787	-	94	61.283	ENSGMOG00000005041	efl1	99	61.283	Gadus_morhua
ENSCSAVG00000001787	-	98	75.000	ENSGALG00000006225	EFL1	94	63.532	Gallus_gallus
ENSCSAVG00000001787	-	98	59.155	ENSGACG00000012495	efl1	99	57.845	Gasterosteus_aculeatus
ENSCSAVG00000001787	-	100	55.979	ENSGAGG00000022841	EFL1	99	59.633	Gopherus_agassizii
ENSCSAVG00000001787	-	97	52.260	ENSGGOG00000005017	EFL1	99	55.163	Gorilla_gorilla
ENSCSAVG00000001787	-	54	42.975	ENSGGOG00000008894	-	98	48.540	Gorilla_gorilla
ENSCSAVG00000001787	-	100	55.644	ENSHBUG00000022667	efl1	99	58.810	Haplochromis_burtoni
ENSCSAVG00000001787	-	99	57.110	ENSHGLG00000011798	EFL1	100	54.188	Heterocephalus_glaber_female
ENSCSAVG00000001787	-	99	63.073	ENSHGLG00100010319	EFTUD1	95	77.215	Heterocephalus_glaber_male
ENSCSAVG00000001787	-	99	60.460	ENSHCOG00000007325	efl1	98	58.957	Hippocampus_comes
ENSCSAVG00000001787	-	100	56.429	ENSIPUG00000023360	EFTUD1	99	61.098	Ictalurus_punctatus
ENSCSAVG00000001787	-	100	54.817	ENSSTOG00000022945	EFL1	100	54.251	Ictidomys_tridecemlineatus
ENSCSAVG00000001787	-	99	61.697	ENSJJAG00000018598	Efl1	94	62.615	Jaculus_jaculus
ENSCSAVG00000001787	-	99	59.055	ENSLBEG00000015269	efl1	98	60.697	Labrus_bergylta
ENSCSAVG00000001787	-	99	73.913	ENSLACG00000016121	EFL1	82	73.913	Latimeria_chalumnae
ENSCSAVG00000001787	-	99	62.989	ENSLOCG00000012862	efl1	99	56.868	Lepisosteus_oculatus
ENSCSAVG00000001787	-	96	61.916	ENSLAFG00000012504	EFL1	97	62.871	Loxodonta_africana
ENSCSAVG00000001787	-	99	61.927	ENSMFAG00000032657	-	95	62.615	Macaca_fascicularis
ENSCSAVG00000001787	-	50	44.177	ENSMFAG00000031099	-	89	51.050	Macaca_fascicularis
ENSCSAVG00000001787	-	99	58.085	ENSMMUG00000023353	EFL1	100	54.871	Macaca_mulatta
ENSCSAVG00000001787	-	50	45.221	ENSMNEG00000042570	-	90	51.559	Macaca_nemestrina
ENSCSAVG00000001787	-	99	61.927	ENSMNEG00000041671	-	94	62.615	Macaca_nemestrina
ENSCSAVG00000001787	-	99	61.927	ENSMLEG00000033735	EFL1	95	62.615	Mandrillus_leucophaeus
ENSCSAVG00000001787	-	100	56.828	ENSMAMG00000011336	efl1	100	56.916	Mastacembelus_armatus
ENSCSAVG00000001787	-	100	55.880	ENSMZEG00005003012	efl1	100	55.880	Maylandia_zebra
ENSCSAVG00000001787	-	99	62.557	ENSMGAG00000007991	EFL1	94	63.242	Meleagris_gallopavo
ENSCSAVG00000001787	-	99	61.239	ENSMAUG00000010709	Efl1	94	62.156	Mesocricetus_auratus
ENSCSAVG00000001787	-	99	62.615	ENSMICG00000027853	EFL1	94	64.160	Microcebus_murinus
ENSCSAVG00000001787	-	99	61.009	ENSMOCG00000007470	Efl1	94	61.927	Microtus_ochrogaster
ENSCSAVG00000001787	-	100	54.554	ENSMMOG00000015370	efl1	100	54.689	Mola_mola
ENSCSAVG00000001787	-	99	59.633	ENSMODG00000019386	EFL1	100	55.749	Monodelphis_domestica
ENSCSAVG00000001787	-	100	55.769	ENSMALG00000018810	efl1	99	58.945	Monopterus_albus
ENSCSAVG00000001787	-	99	59.862	MGP_CAROLIEiJ_G0029936	Efl1	99	68.724	Mus_caroli
ENSCSAVG00000001787	-	99	60.092	ENSMUSG00000038563	Efl1	100	68.803	Mus_musculus
ENSCSAVG00000001787	-	99	60.092	MGP_PahariEiJ_G0013157	Efl1	100	68.803	Mus_pahari
ENSCSAVG00000001787	-	100	83.333	MGP_SPRETEiJ_G0031038	Efl1	95	83.333	Mus_spretus
ENSCSAVG00000001787	-	99	59.174	ENSMPUG00000015494	EFL1	100	55.411	Mustela_putorius_furo
ENSCSAVG00000001787	-	99	61.839	ENSNGAG00000017740	Efl1	94	62.759	Nannospalax_galili
ENSCSAVG00000001787	-	97	54.657	ENSNLEG00000010679	EFL1	94	60.169	Nomascus_leucogenys
ENSCSAVG00000001787	-	51	54.348	ENSNLEG00000031827	-	86	58.537	Nomascus_leucogenys
ENSCSAVG00000001787	-	63	88.571	ENSMEUG00000012049	-	67	88.571	Notamacropus_eugenii
ENSCSAVG00000001787	-	61	83.333	ENSOPRG00000012488	-	55	83.333	Ochotona_princeps
ENSCSAVG00000001787	-	100	55.497	ENSODEG00000016193	EFL1	85	77.215	Octodon_degus
ENSCSAVG00000001787	-	100	54.983	ENSONIG00000003394	efl1	99	58.945	Oreochromis_niloticus
ENSCSAVG00000001787	-	50	46.154	ENSOANG00000011993	-	99	54.149	Ornithorhynchus_anatinus
ENSCSAVG00000001787	-	100	55.965	ENSOCUG00000012163	EFL1	100	56.316	Oryctolagus_cuniculus
ENSCSAVG00000001787	-	65	52.639	ENSORLG00000020390	efl1	100	52.180	Oryzias_latipes
ENSCSAVG00000001787	-	95	65.532	ENSORLG00015012031	efl1	95	65.532	Oryzias_latipes_hsok
ENSCSAVG00000001787	-	100	56.783	ENSOMEG00000022784	efl1	100	56.530	Oryzias_melastigma
ENSCSAVG00000001787	-	99	62.700	ENSOARG00000014452	EFL1	94	63.616	Ovis_aries
ENSCSAVG00000001787	-	99	53.810	ENSPPAG00000039672	EFL1	100	52.724	Pan_paniscus
ENSCSAVG00000001787	-	99	63.991	ENSPPRG00000002193	EFL1	94	63.991	Panthera_pardus
ENSCSAVG00000001787	-	99	63.761	ENSPTIG00000007053	EFL1	94	63.761	Panthera_tigris_altaica
ENSCSAVG00000001787	-	54	44.262	ENSPTRG00000050545	-	97	51.009	Pan_troglodytes
ENSCSAVG00000001787	-	99	62.385	ENSPTRG00000007374	EFL1	95	63.073	Pan_troglodytes
ENSCSAVG00000001787	-	50	44.074	ENSPANG00000031329	-	89	50.524	Papio_anubis
ENSCSAVG00000001787	-	99	61.927	ENSPANG00000015635	-	93	62.615	Papio_anubis
ENSCSAVG00000001787	-	99	64.453	ENSPKIG00000018456	efl1	99	60.930	Paramormyrops_kingsleyae
ENSCSAVG00000001787	-	100	54.869	ENSPSIG00000007790	EFL1	100	54.789	Pelodiscus_sinensis
ENSCSAVG00000001787	-	91	60.335	ENSPMAG00000002026	efl1	93	60.335	Petromyzon_marinus
ENSCSAVG00000001787	-	99	61.468	ENSPCIG00000004372	EFL1	100	55.507	Phascolarctos_cinereus
ENSCSAVG00000001787	-	98	59.268	ENSPFOG00000018687	efl1	100	55.961	Poecilia_formosa
ENSCSAVG00000001787	-	100	56.050	ENSPLAG00000001988	efl1	100	56.050	Poecilia_latipinna
ENSCSAVG00000001787	-	100	55.754	ENSPMEG00000000402	efl1	100	55.754	Poecilia_mexicana
ENSCSAVG00000001787	-	100	56.863	ENSPREG00000022085	efl1	100	56.863	Poecilia_reticulata
ENSCSAVG00000001787	-	99	61.927	ENSPPYG00000006724	EFL1	95	62.615	Pongo_abelii
ENSCSAVG00000001787	-	56	45.673	ENSPCOG00000017475	-	93	54.128	Propithecus_coquereli
ENSCSAVG00000001787	-	99	61.468	ENSPVAG00000003189	EFL1	100	56.399	Pteropus_vampyrus
ENSCSAVG00000001787	-	100	52.124	ENSPNYG00000019406	efl1	93	64.214	Pundamilia_nyererei
ENSCSAVG00000001787	-	99	62.929	ENSPNAG00000012104	efl1	94	62.929	Pygocentrus_nattereri
ENSCSAVG00000001787	-	99	61.697	ENSRNOG00000032723	Efl1	100	55.877	Rattus_norvegicus
ENSCSAVG00000001787	-	99	61.927	ENSRBIG00000040576	EFL1	94	62.615	Rhinopithecus_bieti
ENSCSAVG00000001787	-	100	55.212	ENSRROG00000031475	EFL1	98	59.375	Rhinopithecus_roxellana
ENSCSAVG00000001787	-	98	50.262	YNL163C	RIA1	100	42.226	Saccharomyces_cerevisiae
ENSCSAVG00000001787	-	99	62.615	ENSSBOG00000018280	EFL1	94	63.532	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001787	-	100	57.065	ENSSHAG00000018863	EFL1	100	53.760	Sarcophilus_harrisii
ENSCSAVG00000001787	-	99	61.697	ENSSFOG00015016244	efl1	100	60.550	Scleropages_formosus
ENSCSAVG00000001787	-	100	56.145	ENSSMAG00000016928	efl1	100	56.145	Scophthalmus_maximus
ENSCSAVG00000001787	-	100	56.518	ENSSDUG00000013271	efl1	100	56.605	Seriola_dumerili
ENSCSAVG00000001787	-	100	56.255	ENSSLDG00000014655	efl1	100	56.343	Seriola_lalandi_dorsalis
ENSCSAVG00000001787	-	98	71.739	ENSSPUG00000000941	EFL1	99	59.404	Sphenodon_punctatus
ENSCSAVG00000001787	-	99	62.156	ENSSPAG00000011885	efl1	94	62.156	Stegastes_partitus
ENSCSAVG00000001787	-	100	55.536	ENSSSCG00000001792	EFL1	100	56.667	Sus_scrofa
ENSCSAVG00000001787	-	100	56.931	ENSTGUG00000007850	EFL1	100	56.931	Taeniopygia_guttata
ENSCSAVG00000001787	-	100	50.927	ENSTNIG00000003399	efl1	100	50.840	Tetraodon_nigroviridis
ENSCSAVG00000001787	-	79	64.375	ENSTBEG00000011804	EFL1	77	68.125	Tupaia_belangeri
ENSCSAVG00000001787	-	99	60.412	ENSTTRG00000011243	EFL1	100	55.810	Tursiops_truncatus
ENSCSAVG00000001787	-	99	61.239	ENSUAMG00000022106	EFL1	100	56.392	Ursus_americanus
ENSCSAVG00000001787	-	99	61.468	ENSUMAG00000010303	EFL1	100	56.743	Ursus_maritimus
ENSCSAVG00000001787	-	94	70.370	ENSVPAG00000005735	EFL1	94	70.370	Vicugna_pacos
ENSCSAVG00000001787	-	99	62.156	ENSVVUG00000004967	EFL1	100	56.234	Vulpes_vulpes
ENSCSAVG00000001787	-	99	63.532	ENSXETG00000015701	EFL1	94	63.532	Xenopus_tropicalis
ENSCSAVG00000001787	-	100	56.433	ENSXMAG00000023705	efl1	99	58.257	Xiphophorus_maculatus