EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000001804 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 8588 bases
Position: chrreftig_107:232574-241161
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003043	MMR_HSR1	PF01926.23	5.7e-07	1	1
ENSCSAVP00000003044	MMR_HSR1	PF01926.23	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003089	-	1526	-	ENSCSAVP00000003044	323 (aa)	-	H2YCJ6
ENSCSAVT00000003088	-	1062	-	ENSCSAVP00000003043	327 (aa)	-	H2YCJ5

Gene Model

Click here to download ENSCSAVG00000001804's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001804's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001804	-	100	43.452	ENSCSAVG00000007646	-	95	44.048
ENSCSAVG00000001804	-	100	40.181	ENSCSAVG00000003688	-	95	40.123
ENSCSAVG00000001804	-	100	36.585	ENSCSAVG00000003100	-	66	36.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001804	-	99	52.439	ENSG00000140623	SEPT12	71	62.437	Homo_sapiens
ENSCSAVG00000001804	-	100	51.368	ENSAMEG00000001746	SEPT12	80	51.368	Ailuropoda_melanoleuca
ENSCSAVG00000001804	-	100	51.051	ENSATEG00000007502	sept12	66	51.051	Anabas_testudineus
ENSCSAVG00000001804	-	100	51.212	ENSACAG00000000531	-	85	51.212	Anolis_carolinensis
ENSCSAVG00000001804	-	99	52.134	ENSANAG00000035914	SEPT12	80	52.134	Aotus_nancymaae
ENSCSAVG00000001804	-	100	51.368	ENSAMXG00000013711	sept12	75	51.368	Astyanax_mexicanus
ENSCSAVG00000001804	-	100	51.829	ENSBTAG00000016330	SEPT12	80	51.829	Bos_taurus
ENSCSAVG00000001804	-	100	52.134	ENSCAFG00000019171	SEPT12	81	52.134	Canis_familiaris
ENSCSAVG00000001804	-	100	42.378	ENSCAFG00020024938	SEPT12	91	48.495	Canis_lupus_dingo
ENSCSAVG00000001804	-	100	51.524	ENSCHIG00000013270	SEPT12	82	51.524	Capra_hircus
ENSCSAVG00000001804	-	100	51.368	ENSTSYG00000008537	SEPT12	80	51.368	Carlito_syrichta
ENSCSAVG00000001804	-	99	49.695	ENSCAPG00000013691	SEPT12	79	49.695	Cavia_aperea
ENSCSAVG00000001804	-	99	51.829	ENSCPOG00000011596	SEPT12	79	51.829	Cavia_porcellus
ENSCSAVG00000001804	-	99	52.134	ENSCCAG00000021929	SEPT12	80	52.134	Cebus_capucinus
ENSCSAVG00000001804	-	99	52.439	ENSCATG00000033120	SEPT12	73	61.929	Cercocebus_atys
ENSCSAVG00000001804	-	99	51.524	ENSCLAG00000011397	SEPT12	79	51.524	Chinchilla_lanigera
ENSCSAVG00000001804	-	99	37.349	ENSCSAG00000008975	SEPT12	80	37.349	Chlorocebus_sabaeus
ENSCSAVG00000001804	-	100	52.584	ENSCPBG00000026556	SEPT12	85	52.584	Chrysemys_picta_bellii
ENSCSAVG00000001804	-	99	51.376	ENSCANG00000035476	SEPT12	80	51.376	Colobus_angolensis_palliatus
ENSCSAVG00000001804	-	88	46.885	ENSCGRG00001012476	Sept12	81	46.885	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001804	-	88	46.885	ENSCGRG00000015421	Sept12	81	46.885	Cricetulus_griseus_crigri
ENSCSAVG00000001804	-	100	51.368	ENSCSEG00000011498	sept12	80	51.368	Cynoglossus_semilaevis
ENSCSAVG00000001804	-	100	51.976	ENSDARG00000019191	sept12	78	59.854	Danio_rerio
ENSCSAVG00000001804	-	99	51.829	ENSDORG00000011984	Sept12	86	50.174	Dipodomys_ordii
ENSCSAVG00000001804	-	100	43.598	ENSETEG00000016201	SEPT12	80	43.598	Echinops_telfairi
ENSCSAVG00000001804	-	100	49.544	ENSEBUG00000008442	sept12	50	61.202	Eptatretus_burgeri
ENSCSAVG00000001804	-	100	41.641	ENSEASG00005000570	SEPT12	77	60.204	Equus_asinus_asinus
ENSCSAVG00000001804	-	100	50.610	ENSECAG00000018692	SEPT12	74	50.610	Equus_caballus
ENSCSAVG00000001804	-	100	52.280	ENSFCAG00000029843	SEPT12	80	52.280	Felis_catus
ENSCSAVG00000001804	-	100	53.191	ENSFALG00000004482	SEPT12	78	53.191	Ficedula_albicollis
ENSCSAVG00000001804	-	87	49.477	ENSFDAG00000016066	SEPT12	85	49.477	Fukomys_damarensis
ENSCSAVG00000001804	-	100	51.976	ENSFHEG00000008995	sept12	72	51.976	Fundulus_heteroclitus
ENSCSAVG00000001804	-	100	52.280	ENSGMOG00000009662	sept12	93	52.280	Gadus_morhua
ENSCSAVG00000001804	-	100	52.888	ENSGALG00000029027	SEPT12	83	52.888	Gallus_gallus
ENSCSAVG00000001804	-	100	51.368	ENSGAFG00000005527	sept12	84	51.368	Gambusia_affinis
ENSCSAVG00000001804	-	100	52.584	ENSGACG00000000503	sept12	85	52.584	Gasterosteus_aculeatus
ENSCSAVG00000001804	-	100	51.662	ENSGAGG00000016756	SEPT12	85	51.662	Gopherus_agassizii
ENSCSAVG00000001804	-	99	52.439	ENSGGOG00000007528	SEPT12	80	52.439	Gorilla_gorilla
ENSCSAVG00000001804	-	99	52.584	ENSHGLG00000014562	SEPT12	81	52.584	Heterocephalus_glaber_female
ENSCSAVG00000001804	-	99	52.584	ENSHGLG00100000756	SEPT12	81	52.584	Heterocephalus_glaber_male
ENSCSAVG00000001804	-	100	51.064	ENSIPUG00000015361	sept12	77	50.606	Ictalurus_punctatus
ENSCSAVG00000001804	-	99	51.829	ENSSTOG00000012312	SEPT12	80	51.829	Ictidomys_tridecemlineatus
ENSCSAVG00000001804	-	99	49.383	ENSJJAG00000024267	Sept12	92	49.383	Jaculus_jaculus
ENSCSAVG00000001804	-	100	50.152	ENSKMAG00000006409	sept12	85	50.152	Kryptolebias_marmoratus
ENSCSAVG00000001804	-	100	50.760	ENSLBEG00000004076	sept12	82	50.760	Labrus_bergylta
ENSCSAVG00000001804	-	100	50.909	ENSLAFG00000030360	SEPT12	80	50.909	Loxodonta_africana
ENSCSAVG00000001804	-	99	52.439	ENSMFAG00000043961	SEPT12	80	52.439	Macaca_fascicularis
ENSCSAVG00000001804	-	99	52.439	ENSMLEG00000019167	SEPT12	80	52.439	Mandrillus_leucophaeus
ENSCSAVG00000001804	-	100	51.368	ENSMAMG00000003208	sept12	72	51.368	Mastacembelus_armatus
ENSCSAVG00000001804	-	100	53.495	ENSMGAG00000009617	SEPT12	85	53.495	Meleagris_gallopavo
ENSCSAVG00000001804	-	99	51.829	ENSMAUG00000013139	Sept12	80	51.829	Mesocricetus_auratus
ENSCSAVG00000001804	-	100	51.672	ENSMICG00000015913	SEPT12	80	51.672	Microcebus_murinus
ENSCSAVG00000001804	-	99	52.294	ENSMOCG00000017045	Sept12	83	50.699	Microtus_ochrogaster
ENSCSAVG00000001804	-	100	50.000	ENSMODG00000006197	SEPT12	81	50.000	Monodelphis_domestica
ENSCSAVG00000001804	-	100	51.070	ENSMALG00000003054	sept12	86	51.070	Monopterus_albus
ENSCSAVG00000001804	-	87	50.699	MGP_CAROLIEiJ_G0020416	Sept12	77	50.699	Mus_caroli
ENSCSAVG00000001804	-	99	52.294	ENSMUSG00000022542	Sept12	88	50.523	Mus_musculus
ENSCSAVG00000001804	-	87	50.350	MGP_PahariEiJ_G0016124	Sept12	77	50.350	Mus_pahari
ENSCSAVG00000001804	-	87	50.699	MGP_SPRETEiJ_G0021310	Sept12	77	50.699	Mus_spretus
ENSCSAVG00000001804	-	100	50.456	ENSMPUG00000014915	SEPT12	80	50.456	Mustela_putorius_furo
ENSCSAVG00000001804	-	100	50.000	ENSMLUG00000003525	SEPT12	82	50.000	Myotis_lucifugus
ENSCSAVG00000001804	-	99	50.765	ENSNGAG00000021915	Sept12	86	47.619	Nannospalax_galili
ENSCSAVG00000001804	-	99	48.476	ENSNLEG00000009906	SEPT12	82	49.695	Nomascus_leucogenys
ENSCSAVG00000001804	-	60	59.596	ENSMEUG00000003153	SEPT12	80	59.596	Notamacropus_eugenii
ENSCSAVG00000001804	-	99	52.294	ENSODEG00000013145	SEPT12	80	52.294	Octodon_degus
ENSCSAVG00000001804	-	99	48.936	ENSOCUG00000008343	SEPT12	80	48.936	Oryctolagus_cuniculus
ENSCSAVG00000001804	-	100	52.280	ENSORLG00000019251	-	85	52.280	Oryzias_latipes
ENSCSAVG00000001804	-	100	51.976	ENSORLG00015007797	-	86	51.976	Oryzias_latipes_hsok
ENSCSAVG00000001804	-	100	51.368	ENSOMEG00000002676	-	69	51.368	Oryzias_melastigma
ENSCSAVG00000001804	-	99	51.220	ENSOGAG00000025966	SEPT12	80	51.220	Otolemur_garnettii
ENSCSAVG00000001804	-	100	51.220	ENSOARG00000003930	SEPT12	82	51.220	Ovis_aries
ENSCSAVG00000001804	-	99	52.134	ENSPPAG00000033910	SEPT12	80	52.134	Pan_paniscus
ENSCSAVG00000001804	-	100	42.553	ENSPPRG00000006622	SEPT12	77	42.857	Panthera_pardus
ENSCSAVG00000001804	-	100	52.280	ENSPTIG00000015526	SEPT12	80	52.280	Panthera_tigris_altaica
ENSCSAVG00000001804	-	99	52.134	ENSPTRG00000007728	SEPT12	80	52.134	Pan_troglodytes
ENSCSAVG00000001804	-	99	52.439	ENSPANG00000022807	SEPT12	73	61.929	Papio_anubis
ENSCSAVG00000001804	-	100	52.280	ENSPKIG00000019480	sept12	78	52.280	Paramormyrops_kingsleyae
ENSCSAVG00000001804	-	100	52.727	ENSPKIG00000009934	-	84	52.727	Paramormyrops_kingsleyae
ENSCSAVG00000001804	-	99	44.411	ENSPSIG00000014795	SEPT12	82	46.828	Pelodiscus_sinensis
ENSCSAVG00000001804	-	100	47.720	ENSPMGG00000019506	-	92	45.483	Periophthalmus_magnuspinnatus
ENSCSAVG00000001804	-	100	50.456	ENSPCIG00000026671	SEPT12	81	50.456	Phascolarctos_cinereus
ENSCSAVG00000001804	-	100	52.280	ENSPFOG00000015822	sept12	83	52.280	Poecilia_formosa
ENSCSAVG00000001804	-	100	52.280	ENSPLAG00000004719	sept12	83	52.280	Poecilia_latipinna
ENSCSAVG00000001804	-	100	52.280	ENSPMEG00000022516	sept12	83	52.280	Poecilia_mexicana
ENSCSAVG00000001804	-	99	51.524	ENSPCOG00000014037	SEPT12	80	51.524	Propithecus_coquereli
ENSCSAVG00000001804	-	100	51.672	ENSPVAG00000016080	SEPT12	76	51.672	Pteropus_vampyrus
ENSCSAVG00000001804	-	100	51.672	ENSPNAG00000026381	sept12	76	51.672	Pygocentrus_nattereri
ENSCSAVG00000001804	-	99	52.294	ENSRNOG00000003137	Sept12	80	52.294	Rattus_norvegicus
ENSCSAVG00000001804	-	99	51.682	ENSRBIG00000024546	SEPT12	80	51.682	Rhinopithecus_bieti
ENSCSAVG00000001804	-	99	51.682	ENSRROG00000028781	SEPT12	80	51.682	Rhinopithecus_roxellana
ENSCSAVG00000001804	-	99	52.439	ENSSBOG00000036170	SEPT12	80	52.439	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001804	-	100	50.305	ENSSHAG00000007036	SEPT12	79	50.305	Sarcophilus_harrisii
ENSCSAVG00000001804	-	100	50.909	ENSSFOG00015010148	-	91	46.769	Scleropages_formosus
ENSCSAVG00000001804	-	100	52.121	ENSSFOG00015023684	sept12	82	52.121	Scleropages_formosus
ENSCSAVG00000001804	-	100	51.672	ENSSMAG00000015399	sept12	68	51.672	Scophthalmus_maximus
ENSCSAVG00000001804	-	100	51.988	ENSSPUG00000009703	SEPT12	84	51.988	Sphenodon_punctatus
ENSCSAVG00000001804	-	100	50.760	ENSTGUG00000003705	SEPT12	97	50.760	Taeniopygia_guttata
ENSCSAVG00000001804	-	100	51.064	ENSTRUG00000021364	sept12	64	51.064	Takifugu_rubripes
ENSCSAVG00000001804	-	100	52.134	ENSTTRG00000005489	SEPT12	76	52.134	Tursiops_truncatus
ENSCSAVG00000001804	-	100	41.641	ENSUMAG00000002994	SEPT12	84	60.563	Ursus_maritimus
ENSCSAVG00000001804	-	56	61.202	ENSVPAG00000010635	-	69	61.202	Vicugna_pacos
ENSCSAVG00000001804	-	100	52.134	ENSVVUG00000016536	SEPT12	80	52.134	Vulpes_vulpes
ENSCSAVG00000001804	-	100	53.495	ENSXETG00000009151	sept12	88	53.495	Xenopus_tropicalis
ENSCSAVG00000001804	-	100	51.976	ENSXCOG00000007643	sept12	81	51.976	Xiphophorus_couchianus
ENSCSAVG00000001804	-	100	51.976	ENSXMAG00000012528	sept12	66	51.976	Xiphophorus_maculatus