EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000001896 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2917 bases
Position: chrreftig_83:682278-685194
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003189	LSM	PF01423.22	9.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003238	-	742	-	ENSCSAVP00000003189	117 (aa)	-	H2YCZ1
ENSCSAVT00000003237	-	568	-	ENSCSAVP00000003188	88 (aa)	-	H2YCZ0

Gene Model

Click here to download ENSCSAVG00000001896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001896's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000001896	-	94	30.508	ENSG00000181817	LSM10	96	30.508	Homo_sapiens
ENSCSAVG00000001896	-	87	30.392	ENSAMEG00000019854	LSM10	83	30.392	Ailuropoda_melanoleuca
ENSCSAVG00000001896	-	87	30.392	ENSACIG00000015420	oscp1a	68	30.392	Amphilophus_citrinellus
ENSCSAVG00000001896	-	87	34.314	ENSAOCG00000015607	LSM10	79	34.314	Amphiprion_ocellaris
ENSCSAVG00000001896	-	85	33.000	ENSAOCG00000014654	-	83	33.000	Amphiprion_ocellaris
ENSCSAVG00000001896	-	85	33.000	ENSAOCG00000015618	LSM10	83	33.000	Amphiprion_ocellaris
ENSCSAVG00000001896	-	85	33.000	ENSAPEG00000021845	-	83	33.000	Amphiprion_percula
ENSCSAVG00000001896	-	87	34.314	ENSAPEG00000021851	LSM10	79	34.314	Amphiprion_percula
ENSCSAVG00000001896	-	97	32.743	ENSACAG00000001231	LSM10	92	32.743	Anolis_carolinensis
ENSCSAVG00000001896	-	87	31.373	ENSANAG00000018759	-	83	31.373	Aotus_nancymaae
ENSCSAVG00000001896	-	87	31.373	ENSANAG00000031489	-	84	31.373	Aotus_nancymaae
ENSCSAVG00000001896	-	86	31.683	ENSAMXG00000025301	oscp1a	84	31.683	Astyanax_mexicanus
ENSCSAVG00000001896	-	87	31.373	ENSBTAG00000024096	LSM10	84	31.373	Bos_taurus
ENSCSAVG00000001896	-	66	31.169	WBGene00010619	K07A1.15	62	31.169	Caenorhabditis_elegans
ENSCSAVG00000001896	-	87	31.373	ENSCJAG00000044880	LSM10	83	31.373	Callithrix_jacchus
ENSCSAVG00000001896	-	87	31.373	ENSCAFG00000003382	LSM10	83	31.373	Canis_familiaris
ENSCSAVG00000001896	-	87	31.373	ENSCAFG00020008920	LSM10	83	31.373	Canis_lupus_dingo
ENSCSAVG00000001896	-	87	31.373	ENSCHIG00000009398	LSM10	84	31.373	Capra_hircus
ENSCSAVG00000001896	-	87	31.373	ENSCAPG00000012567	LSM10	83	31.373	Cavia_aperea
ENSCSAVG00000001896	-	87	31.373	ENSCPOG00000039302	LSM10	83	31.373	Cavia_porcellus
ENSCSAVG00000001896	-	87	31.373	ENSCCAG00000008378	-	83	31.373	Cebus_capucinus
ENSCSAVG00000001896	-	87	31.373	ENSCCAG00000018913	-	83	31.373	Cebus_capucinus
ENSCSAVG00000001896	-	87	32.353	ENSCATG00000006589	LSM10	83	32.353	Cercocebus_atys
ENSCSAVG00000001896	-	87	32.353	ENSCLAG00000008633	LSM10	83	32.353	Chinchilla_lanigera
ENSCSAVG00000001896	-	87	32.353	ENSCSAG00000000134	LSM10	83	32.353	Chlorocebus_sabaeus
ENSCSAVG00000001896	-	87	32.353	ENSCHOG00000008615	LSM10	82	32.353	Choloepus_hoffmanni
ENSCSAVG00000001896	-	97	61.947	ENSCING00000024984	-	97	61.947	Ciona_intestinalis
ENSCSAVG00000001896	-	87	32.353	ENSCANG00000019928	LSM10	83	32.353	Colobus_angolensis_palliatus
ENSCSAVG00000001896	-	77	32.609	ENSCGRG00001022673	-	75	32.609	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001896	-	87	32.353	ENSCGRG00001004317	-	84	32.353	Cricetulus_griseus_chok1gshd
ENSCSAVG00000001896	-	77	32.609	ENSCGRG00000015514	-	75	32.609	Cricetulus_griseus_crigri
ENSCSAVG00000001896	-	87	32.353	ENSCGRG00000014935	-	84	32.353	Cricetulus_griseus_crigri
ENSCSAVG00000001896	-	87	31.373	ENSDARG00000101222	oscp1a	85	31.373	Danio_rerio
ENSCSAVG00000001896	-	87	31.373	ENSDNOG00000036662	LSM10	83	31.373	Dasypus_novemcinctus
ENSCSAVG00000001896	-	87	31.373	ENSDORG00000007579	Lsm10	83	31.373	Dipodomys_ordii
ENSCSAVG00000001896	-	87	31.373	ENSETEG00000005703	LSM10	84	31.373	Echinops_telfairi
ENSCSAVG00000001896	-	77	36.667	ENSEBUG00000001312	oscp1a	74	36.667	Eptatretus_burgeri
ENSCSAVG00000001896	-	87	31.373	ENSEASG00005012194	LSM10	83	31.373	Equus_asinus_asinus
ENSCSAVG00000001896	-	87	31.373	ENSECAG00000005071	LSM10	83	31.373	Equus_caballus
ENSCSAVG00000001896	-	87	32.353	ENSEEUG00000012032	LSM10	83	32.353	Erinaceus_europaeus
ENSCSAVG00000001896	-	85	30.303	ENSELUG00000007452	oscp1a	81	30.303	Esox_lucius
ENSCSAVG00000001896	-	87	31.373	ENSFALG00000000851	LSM10	83	31.373	Ficedula_albicollis
ENSCSAVG00000001896	-	87	31.373	ENSFDAG00000021056	LSM10	83	31.373	Fukomys_damarensis
ENSCSAVG00000001896	-	80	35.106	ENSFHEG00000001058	oscp1a	81	35.106	Fundulus_heteroclitus
ENSCSAVG00000001896	-	86	30.693	ENSGMOG00000019832	oscp1a	85	30.693	Gadus_morhua
ENSCSAVG00000001896	-	87	31.373	ENSGALG00000002127	LSM10	83	31.373	Gallus_gallus
ENSCSAVG00000001896	-	75	31.818	ENSGAFG00000016445	oscp1a	72	31.818	Gambusia_affinis
ENSCSAVG00000001896	-	83	32.990	ENSGACG00000002329	oscp1a	80	32.990	Gasterosteus_aculeatus
ENSCSAVG00000001896	-	82	31.250	ENSGAGG00000024848	LSM10	78	31.250	Gopherus_agassizii
ENSCSAVG00000001896	-	87	31.373	ENSGGOG00000003556	LSM10	83	31.373	Gorilla_gorilla
ENSCSAVG00000001896	-	87	31.373	ENSHGLG00000011625	LSM10	83	31.373	Heterocephalus_glaber_female
ENSCSAVG00000001896	-	87	31.373	ENSHGLG00100001769	LSM10	83	31.373	Heterocephalus_glaber_male
ENSCSAVG00000001896	-	87	32.407	ENSIPUG00000005808	oscp1a	94	32.407	Ictalurus_punctatus
ENSCSAVG00000001896	-	87	30.392	ENSSTOG00000000606	LSM10	83	30.392	Ictidomys_tridecemlineatus
ENSCSAVG00000001896	-	85	32.323	ENSKMAG00000012143	oscp1a	82	32.323	Kryptolebias_marmoratus
ENSCSAVG00000001896	-	85	30.303	ENSLBEG00000017764	oscp1a	81	30.303	Labrus_bergylta
ENSCSAVG00000001896	-	87	33.333	ENSLACG00000015904	LSM10	78	33.333	Latimeria_chalumnae
ENSCSAVG00000001896	-	87	34.314	ENSLOCG00000018277	oscp1a	84	34.314	Lepisosteus_oculatus
ENSCSAVG00000001896	-	87	31.373	ENSLAFG00000009600	LSM10	84	31.373	Loxodonta_africana
ENSCSAVG00000001896	-	87	32.353	ENSMFAG00000009115	LSM10	83	32.353	Macaca_fascicularis
ENSCSAVG00000001896	-	87	32.353	ENSMMUG00000017338	LSM10	83	32.353	Macaca_mulatta
ENSCSAVG00000001896	-	87	32.353	ENSMNEG00000020023	LSM10	83	32.353	Macaca_nemestrina
ENSCSAVG00000001896	-	87	32.353	ENSMLEG00000025150	LSM10	83	32.353	Mandrillus_leucophaeus
ENSCSAVG00000001896	-	85	32.323	ENSMAMG00000004427	oscp1a	81	32.323	Mastacembelus_armatus
ENSCSAVG00000001896	-	87	31.373	ENSMGAG00000015707	LSM10	83	31.373	Meleagris_gallopavo
ENSCSAVG00000001896	-	87	32.353	ENSMAUG00000016624	Lsm10	84	32.353	Mesocricetus_auratus
ENSCSAVG00000001896	-	87	32.353	ENSMOCG00000021943	Lsm10	84	32.353	Microtus_ochrogaster
ENSCSAVG00000001896	-	85	32.000	ENSMMOG00000013597	oscp1a	75	32.000	Mola_mola
ENSCSAVG00000001896	-	87	31.373	ENSMODG00000023328	LSM10	83	31.373	Monodelphis_domestica
ENSCSAVG00000001896	-	87	30.392	MGP_CAROLIEiJ_G0026467	Lsm10	94	31.034	Mus_caroli
ENSCSAVG00000001896	-	87	30.392	ENSMUSG00000050188	Lsm10	94	31.034	Mus_musculus
ENSCSAVG00000001896	-	87	30.392	MGP_PahariEiJ_G0028798	Lsm10	94	31.034	Mus_pahari
ENSCSAVG00000001896	-	87	30.392	MGP_SPRETEiJ_G0027446	Lsm10	94	31.034	Mus_spretus
ENSCSAVG00000001896	-	87	31.373	ENSMPUG00000018593	LSM10	83	31.373	Mustela_putorius_furo
ENSCSAVG00000001896	-	87	31.373	ENSMLUG00000023895	LSM10	83	31.373	Myotis_lucifugus
ENSCSAVG00000001896	-	87	31.373	ENSNGAG00000015011	Lsm10	83	31.373	Nannospalax_galili
ENSCSAVG00000001896	-	87	32.353	ENSNLEG00000033754	LSM10	83	32.353	Nomascus_leucogenys
ENSCSAVG00000001896	-	87	31.373	ENSMEUG00000006313	LSM10	83	31.373	Notamacropus_eugenii
ENSCSAVG00000001896	-	87	32.353	ENSOPRG00000001699	LSM10	83	32.353	Ochotona_princeps
ENSCSAVG00000001896	-	87	32.353	ENSODEG00000019161	LSM10	83	32.353	Octodon_degus
ENSCSAVG00000001896	-	85	34.343	ENSOANG00000002066	LSM10	80	34.343	Ornithorhynchus_anatinus
ENSCSAVG00000001896	-	87	32.353	ENSOCUG00000005333	LSM10	83	32.353	Oryctolagus_cuniculus
ENSCSAVG00000001896	-	83	30.928	ENSORLG00000009504	oscp1a	80	30.928	Oryzias_latipes
ENSCSAVG00000001896	-	83	30.928	ENSORLG00020016201	oscp1a	80	30.928	Oryzias_latipes_hni
ENSCSAVG00000001896	-	83	31.959	ENSORLG00015007794	oscp1a	82	31.959	Oryzias_latipes_hsok
ENSCSAVG00000001896	-	87	30.392	ENSOGAG00000002653	LSM10	83	30.392	Otolemur_garnettii
ENSCSAVG00000001896	-	87	31.373	ENSOARG00000009596	LSM10	84	31.373	Ovis_aries
ENSCSAVG00000001896	-	94	30.508	ENSPPAG00000023465	LSM10	96	30.508	Pan_paniscus
ENSCSAVG00000001896	-	87	31.373	ENSPPRG00000014619	LSM10	83	31.373	Panthera_pardus
ENSCSAVG00000001896	-	87	31.373	ENSPTIG00000004613	LSM10	83	31.373	Panthera_tigris_altaica
ENSCSAVG00000001896	-	94	30.508	ENSPTRG00000000539	LSM10	96	30.508	Pan_troglodytes
ENSCSAVG00000001896	-	87	32.353	ENSPANG00000023172	LSM10	83	32.353	Papio_anubis
ENSCSAVG00000001896	-	85	34.343	ENSPKIG00000003728	oscp1a	80	34.343	Paramormyrops_kingsleyae
ENSCSAVG00000001896	-	82	32.292	ENSPSIG00000000590	LSM10	78	32.292	Pelodiscus_sinensis
ENSCSAVG00000001896	-	59	31.884	ENSPMGG00000015718	oscp1a	90	31.884	Periophthalmus_magnuspinnatus
ENSCSAVG00000001896	-	86	32.673	ENSPFOG00000020490	oscp1a	86	32.673	Poecilia_formosa
ENSCSAVG00000001896	-	86	32.673	ENSPLAG00000016537	oscp1a	77	32.673	Poecilia_latipinna
ENSCSAVG00000001896	-	79	33.696	ENSPMEG00000000174	oscp1a	80	33.696	Poecilia_mexicana
ENSCSAVG00000001896	-	86	32.673	ENSPREG00000009899	oscp1a	77	32.673	Poecilia_reticulata
ENSCSAVG00000001896	-	87	32.353	ENSPPYG00000001539	LSM10	83	32.353	Pongo_abelii
ENSCSAVG00000001896	-	87	31.373	ENSPCAG00000002520	LSM10	85	31.373	Procavia_capensis
ENSCSAVG00000001896	-	87	32.353	ENSPVAG00000008644	LSM10	83	32.353	Pteropus_vampyrus
ENSCSAVG00000001896	-	85	32.323	ENSPNAG00000028829	oscp1a	83	32.323	Pygocentrus_nattereri
ENSCSAVG00000001896	-	87	31.373	ENSRNOG00000025716	Lsm10	84	31.373	Rattus_norvegicus
ENSCSAVG00000001896	-	87	32.353	ENSRBIG00000001561	LSM10	83	32.353	Rhinopithecus_bieti
ENSCSAVG00000001896	-	87	32.353	ENSRROG00000011414	LSM10	83	32.353	Rhinopithecus_roxellana
ENSCSAVG00000001896	-	87	31.373	ENSSBOG00000036413	-	83	31.373	Saimiri_boliviensis_boliviensis
ENSCSAVG00000001896	-	87	31.373	ENSSHAG00000018056	LSM10	83	31.373	Sarcophilus_harrisii
ENSCSAVG00000001896	-	65	32.895	ENSSFOG00015019954	lsm10	83	32.673	Scleropages_formosus
ENSCSAVG00000001896	-	83	31.959	ENSSMAG00000001297	oscp1a	83	31.959	Scophthalmus_maximus
ENSCSAVG00000001896	-	84	30.612	ENSSDUG00000007090	oscp1a	80	30.612	Seriola_dumerili
ENSCSAVG00000001896	-	84	30.612	ENSSLDG00000000800	oscp1a	81	30.612	Seriola_lalandi_dorsalis
ENSCSAVG00000001896	-	87	31.373	ENSSARG00000004211	LSM10	82	31.373	Sorex_araneus
ENSCSAVG00000001896	-	85	31.313	ENSSPAG00000009229	oscp1a	82	31.313	Stegastes_partitus
ENSCSAVG00000001896	-	87	30.392	ENSSSCG00000038916	LSM10	84	30.392	Sus_scrofa
ENSCSAVG00000001896	-	87	31.373	ENSTGUG00000001602	-	84	31.373	Taeniopygia_guttata
ENSCSAVG00000001896	-	87	31.373	ENSTGUG00000001600	-	84	31.373	Taeniopygia_guttata
ENSCSAVG00000001896	-	85	32.000	ENSTRUG00000010531	oscp1a	81	32.000	Takifugu_rubripes
ENSCSAVG00000001896	-	87	31.373	ENSTBEG00000016674	LSM10	83	31.373	Tupaia_belangeri
ENSCSAVG00000001896	-	87	30.392	ENSUAMG00000020265	LSM10	83	30.392	Ursus_americanus
ENSCSAVG00000001896	-	87	31.373	ENSVVUG00000023209	LSM10	83	31.373	Vulpes_vulpes
ENSCSAVG00000001896	-	84	30.612	ENSXETG00000027631	lsm10	81	30.612	Xenopus_tropicalis
ENSCSAVG00000001896	-	86	33.663	ENSXCOG00000018776	oscp1a	64	33.663	Xiphophorus_couchianus
ENSCSAVG00000001896	-	79	33.696	ENSXMAG00000019963	oscp1a	74	33.696	Xiphophorus_maculatus