EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSCSAVG00000001949 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 3599 bases
Position: chrreftig_113:17719-21317
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003275	zf-C2H2	PF00096.26	2.2e-27	1	5
ENSCSAVP00000003275	zf-C2H2	PF00096.26	2.2e-27	2	5
ENSCSAVP00000003275	zf-C2H2	PF00096.26	2.2e-27	3	5
ENSCSAVP00000003275	zf-C2H2	PF00096.26	2.2e-27	4	5
ENSCSAVP00000003275	zf-C2H2	PF00096.26	2.2e-27	5	5
ENSCSAVP00000003275	zf-met	PF12874.7	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003325	-	495	-	ENSCSAVP00000003275	165 (aa)	-	H2YD77

Gene Model

Click here to download ENSCSAVG00000001949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000001949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000001949	-	99	45.455	ENSCSAVG00000004543	-	91	40.506
ENSCSAVG00000001949	-	86	51.282	ENSCSAVG00000011146	-	81	51.282
ENSCSAVG00000001949	-	98	45.333	ENSCSAVG00000005896	-	68	45.333
ENSCSAVG00000001949	-	98	47.273	ENSCSAVG00000000690	-	100	47.273
ENSCSAVG00000001949	-	99	38.272	ENSCSAVG00000011749	-	78	38.272
ENSCSAVG00000001949	-	99	42.105	ENSCSAVG00000001989	-	100	42.105
ENSCSAVG00000001949	-	99	44.444	ENSCSAVG00000009574	-	100	44.444
ENSCSAVG00000001949	-	99	41.096	ENSCSAVG00000002179	-	100	41.096
ENSCSAVG00000001949	-	99	37.778	ENSCSAVG00000009739	-	50	37.778
ENSCSAVG00000001949	-	79	40.000	ENSCSAVG00000003690	-	94	40.000
ENSCSAVG00000001949	-	100	39.130	ENSCSAVG00000010156	-	93	39.130
ENSCSAVG00000001949	-	99	43.590	ENSCSAVG00000000673	-	100	43.590
ENSCSAVG00000001949	-	96	46.753	ENSCSAVG00000000655	-	98	46.753
ENSCSAVG00000001949	-	99	40.881	ENSCSAVG00000010960	-	99	40.881
ENSCSAVG00000001949	-	99	47.059	ENSCSAVG00000007589	-	100	41.718
ENSCSAVG00000001949	-	99	45.333	ENSCSAVG00000004499	-	99	45.333
ENSCSAVG00000001949	-	96	42.949	ENSCSAVG00000007918	-	100	42.949
ENSCSAVG00000001949	-	99	48.333	ENSCSAVG00000004703	-	100	48.333
ENSCSAVG00000001949	-	95	39.450	ENSCSAVG00000003895	-	100	39.450
ENSCSAVG00000001949	-	99	44.000	ENSCSAVG00000006608	-	99	43.827
ENSCSAVG00000001949	-	96	41.304	ENSCSAVG00000000520	-	100	41.304
ENSCSAVG00000001949	-	98	40.351	ENSCSAVG00000001808	-	100	40.351
ENSCSAVG00000001949	-	99	38.272	ENSCSAVG00000009217	-	97	38.272
ENSCSAVG00000001949	-	96	47.273	ENSCSAVG00000000293	-	100	47.273
ENSCSAVG00000001949	-	99	53.086	ENSCSAVG00000005904	-	87	53.086
ENSCSAVG00000001949	-	95	45.000	ENSCSAVG00000004762	-	100	45.000
ENSCSAVG00000001949	-	98	41.667	ENSCSAVG00000004678	-	99	41.463
ENSCSAVG00000001949	-	99	36.111	ENSCSAVG00000006745	-	97	36.111
ENSCSAVG00000001949	-	99	43.165	ENSCSAVG00000006141	-	100	44.156
ENSCSAVG00000001949	-	99	33.333	ENSCSAVG00000006729	-	67	33.333
ENSCSAVG00000001949	-	95	38.750	ENSCSAVG00000009819	-	70	38.750
ENSCSAVG00000001949	-	99	40.000	ENSCSAVG00000009583	-	99	40.000
ENSCSAVG00000001949	-	96	50.000	ENSCSAVG00000008862	-	99	50.000
ENSCSAVG00000001949	-	98	48.000	ENSCSAVG00000000649	-	99	48.000
ENSCSAVG00000001949	-	96	50.980	ENSCSAVG00000000642	-	99	50.980
ENSCSAVG00000001949	-	96	39.535	ENSCSAVG00000006650	-	100	39.535
ENSCSAVG00000001949	-	96	41.875	ENSCSAVG00000009953	-	96	41.875
ENSCSAVG00000001949	-	95	46.753	ENSCSAVG00000001830	-	99	46.753
ENSCSAVG00000001949	-	96	44.615	ENSCSAVG00000001834	-	100	44.615