EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002108 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 7391 bases
Position: chrreftig_442:121230-128620
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003548	GTP_EFTU	PF00009.27	4.4e-61	1	1
ENSCSAVP00000003546	GTP_EFTU	PF00009.27	5.7e-61	1	1
ENSCSAVP00000003547	GTP_EFTU	PF00009.27	7e-61	1	1
ENSCSAVP00000003545	GTP_EFTU	PF00009.27	7.4e-61	1	1
ENSCSAVP00000003549	GTP_EFTU	PF00009.27	8.2e-60	1	1
ENSCSAVP00000003550	GTP_EFTU	PF00009.27	1.5e-59	1	1
ENSCSAVP00000003548	GTP_EFTU_D2	PF03144.25	3.3e-09	1	1
ENSCSAVP00000003549	GTP_EFTU_D2	PF03144.25	4.9e-09	1	1
ENSCSAVP00000003546	GTP_EFTU_D2	PF03144.25	4.9e-09	1	1
ENSCSAVP00000003550	GTP_EFTU_D2	PF03144.25	4.9e-09	1	1
ENSCSAVP00000003547	GTP_EFTU_D2	PF03144.25	5e-09	1	1
ENSCSAVP00000003545	GTP_EFTU_D2	PF03144.25	5e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003605	-	2061	-	ENSCSAVP00000003550	687 (aa)	-	H2YE02
ENSCSAVT00000003604	-	2103	-	ENSCSAVP00000003549	701 (aa)	-	H2YE01
ENSCSAVT00000003603	-	1749	-	ENSCSAVP00000003548	583 (aa)	-	H2YE00
ENSCSAVT00000003602	-	2139	-	ENSCSAVP00000003547	713 (aa)	-	H2YDZ9
ENSCSAVT00000003601	-	2094	-	ENSCSAVP00000003546	698 (aa)	-	H2YDZ8
ENSCSAVT00000003600	-	2124	-	ENSCSAVP00000003545	708 (aa)	-	H2YDZ7

Gene Model

Click here to download ENSCSAVG00000002108's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002108's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002108	-	99	31.492	ENSCSAVG00000008514	-	99	30.447
ENSCSAVG00000002108	-	68	38.514	ENSCSAVG00000003974	-	64	38.514
ENSCSAVG00000002108	-	51	43.056	ENSCSAVG00000004563	-	55	43.056

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002108	-	99	48.037	ENSG00000164347	GFM2	100	62.500	Homo_sapiens
ENSCSAVG00000002108	-	99	48.268	ENSAPOG00000005965	gfm2	92	41.725	Acanthochromis_polyacanthus
ENSCSAVG00000002108	-	99	47.005	ENSAMEG00000000544	GFM2	91	41.168	Ailuropoda_melanoleuca
ENSCSAVG00000002108	-	99	45.536	ENSACIG00000003338	gfm2	99	40.797	Amphilophus_citrinellus
ENSCSAVG00000002108	-	99	48.736	ENSAOCG00000014342	gfm2	92	41.781	Amphiprion_ocellaris
ENSCSAVG00000002108	-	99	48.736	ENSAPEG00000000424	gfm2	92	42.164	Amphiprion_percula
ENSCSAVG00000002108	-	99	48.073	ENSATEG00000010821	gfm2	97	39.643	Anabas_testudineus
ENSCSAVG00000002108	-	98	48.268	ENSAPLG00000007221	GFM2	91	42.424	Anas_platyrhynchos
ENSCSAVG00000002108	-	99	48.046	ENSACAG00000009011	GFM2	92	41.944	Anolis_carolinensis
ENSCSAVG00000002108	-	95	47.738	ENSANAG00000027737	GFM2	89	51.361	Aotus_nancymaae
ENSCSAVG00000002108	-	99	47.380	ENSACLG00000027430	gfm2	95	40.715	Astatotilapia_calliptera
ENSCSAVG00000002108	-	99	49.775	ENSAMXG00000009979	gfm2	93	43.236	Astyanax_mexicanus
ENSCSAVG00000002108	-	97	47.005	ENSBTAG00000015519	GFM2	92	38.978	Bos_taurus
ENSCSAVG00000002108	-	99	39.408	WBGene00022491	Y119D3B.14	97	35.724	Caenorhabditis_elegans
ENSCSAVG00000002108	-	99	47.806	ENSCJAG00000016802	GFM2	90	51.361	Callithrix_jacchus
ENSCSAVG00000002108	-	98	46.651	ENSCAFG00000008298	GFM2	91	41.413	Canis_familiaris
ENSCSAVG00000002108	-	98	46.651	ENSCAFG00020016998	GFM2	94	41.413	Canis_lupus_dingo
ENSCSAVG00000002108	-	97	46.774	ENSCHIG00000012765	GFM2	90	40.782	Capra_hircus
ENSCSAVG00000002108	-	76	47.991	ENSTSYG00000011664	GFM2	86	47.991	Carlito_syrichta
ENSCSAVG00000002108	-	91	34.803	ENSCAPG00000003480	GFM2	88	30.746	Cavia_aperea
ENSCSAVG00000002108	-	99	48.268	ENSCPOG00000006332	GFM2	90	49.837	Cavia_porcellus
ENSCSAVG00000002108	-	99	47.696	ENSCCAG00000029580	GFM2	90	50.847	Cebus_capucinus
ENSCSAVG00000002108	-	99	49.423	ENSCATG00000036394	GFM2	90	52.721	Cercocebus_atys
ENSCSAVG00000002108	-	99	47.806	ENSCLAG00000013440	GFM2	91	40.329	Chinchilla_lanigera
ENSCSAVG00000002108	-	99	49.078	ENSCSAG00000015464	GFM2	91	42.559	Chlorocebus_sabaeus
ENSCSAVG00000002108	-	95	47.465	ENSCHOG00000002245	GFM2	74	47.084	Choloepus_hoffmanni
ENSCSAVG00000002108	-	99	47.344	ENSCPBG00000000761	GFM2	94	41.922	Chrysemys_picta_bellii
ENSCSAVG00000002108	-	99	76.591	ENSCING00000003377	-	96	75.779	Ciona_intestinalis
ENSCSAVG00000002108	-	99	49.078	ENSCANG00000042500	GFM2	90	52.203	Colobus_angolensis_palliatus
ENSCSAVG00000002108	-	99	48.499	ENSCGRG00001022802	Gfm2	91	42.281	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002108	-	99	48.499	ENSCGRG00000001439	Gfm2	91	42.420	Cricetulus_griseus_crigri
ENSCSAVG00000002108	-	99	47.392	ENSCSEG00000013115	gfm2	94	41.725	Cynoglossus_semilaevis
ENSCSAVG00000002108	-	99	46.939	ENSCVAG00000010057	gfm2	96	50.172	Cyprinodon_variegatus
ENSCSAVG00000002108	-	99	48.299	ENSDARG00000005561	gfm2	93	43.213	Danio_rerio
ENSCSAVG00000002108	-	98	48.046	ENSDNOG00000005118	GFM2	91	42.462	Dasypus_novemcinctus
ENSCSAVG00000002108	-	100	48.387	ENSDORG00000016231	Gfm2	92	41.233	Dipodomys_ordii
ENSCSAVG00000002108	-	96	40.275	FBgn0051159	mRRF2	93	37.622	Drosophila_melanogaster
ENSCSAVG00000002108	-	92	47.235	ENSETEG00000004090	GFM2	68	47.465	Echinops_telfairi
ENSCSAVG00000002108	-	88	65.584	ENSEBUG00000012181	gfm2	94	65.584	Eptatretus_burgeri
ENSCSAVG00000002108	-	83	67.376	ENSEASG00005018285	GFM2	85	67.391	Equus_asinus_asinus
ENSCSAVG00000002108	-	97	41.339	ENSECAG00000006640	GFM2	91	37.413	Equus_caballus
ENSCSAVG00000002108	-	99	32.218	ENSEEUG00000004656	GFM2	94	32.218	Erinaceus_europaeus
ENSCSAVG00000002108	-	99	47.856	ENSELUG00000003075	gfm2	92	41.331	Esox_lucius
ENSCSAVG00000002108	-	99	47.926	ENSFCAG00000011977	GFM2	90	51.525	Felis_catus
ENSCSAVG00000002108	-	98	48.730	ENSFALG00000010106	GFM2	91	42.758	Ficedula_albicollis
ENSCSAVG00000002108	-	100	42.729	ENSFDAG00000004993	GFM2	73	64.571	Fukomys_damarensis
ENSCSAVG00000002108	-	99	47.619	ENSFHEG00000006210	gfm2	93	42.437	Fundulus_heteroclitus
ENSCSAVG00000002108	-	99	47.392	ENSGMOG00000003177	gfm2	93	41.609	Gadus_morhua
ENSCSAVG00000002108	-	98	48.848	ENSGALG00000014939	GFM2	92	42.201	Gallus_gallus
ENSCSAVG00000002108	-	99	47.630	ENSGAFG00000000439	gfm2	93	42.179	Gambusia_affinis
ENSCSAVG00000002108	-	99	47.392	ENSGACG00000015889	gfm2	98	40.358	Gasterosteus_aculeatus
ENSCSAVG00000002108	-	99	47.806	ENSGAGG00000012347	GFM2	92	42.340	Gopherus_agassizii
ENSCSAVG00000002108	-	94	48.268	ENSGGOG00000013739	GFM2	90	51.701	Gorilla_gorilla
ENSCSAVG00000002108	-	99	47.273	ENSHBUG00000011021	gfm2	92	40.385	Haplochromis_burtoni
ENSCSAVG00000002108	-	100	47.273	ENSHGLG00000000419	GFM2	99	40.822	Heterocephalus_glaber_female
ENSCSAVG00000002108	-	100	47.273	ENSHGLG00100018383	GFM2	99	40.822	Heterocephalus_glaber_male
ENSCSAVG00000002108	-	99	48.276	ENSHCOG00000008208	gfm2	96	52.881	Hippocampus_comes
ENSCSAVG00000002108	-	99	49.654	ENSIPUG00000024153	gfm2	94	42.399	Ictalurus_punctatus
ENSCSAVG00000002108	-	98	47.344	ENSSTOG00000007931	GFM2	91	41.048	Ictidomys_tridecemlineatus
ENSCSAVG00000002108	-	99	46.420	ENSJJAG00000024278	Gfm2	91	40.548	Jaculus_jaculus
ENSCSAVG00000002108	-	99	46.259	ENSKMAG00000013277	gfm2	92	41.176	Kryptolebias_marmoratus
ENSCSAVG00000002108	-	99	47.392	ENSLBEG00000020327	gfm2	92	40.890	Labrus_bergylta
ENSCSAVG00000002108	-	99	46.651	ENSLACG00000004622	GFM2	91	41.144	Latimeria_chalumnae
ENSCSAVG00000002108	-	96	49.423	ENSLOCG00000005368	gfm2	92	43.466	Lepisosteus_oculatus
ENSCSAVG00000002108	-	99	46.651	ENSLAFG00000018575	GFM2	91	41.144	Loxodonta_africana
ENSCSAVG00000002108	-	99	49.078	ENSMFAG00000039713	GFM2	90	52.721	Macaca_fascicularis
ENSCSAVG00000002108	-	99	49.078	ENSMMUG00000019998	GFM2	90	52.721	Macaca_mulatta
ENSCSAVG00000002108	-	99	48.848	ENSMNEG00000034666	GFM2	90	52.721	Macaca_nemestrina
ENSCSAVG00000002108	-	99	49.078	ENSMLEG00000038075	GFM2	90	52.721	Mandrillus_leucophaeus
ENSCSAVG00000002108	-	99	48.649	ENSMAMG00000000452	gfm2	99	40.699	Mastacembelus_armatus
ENSCSAVG00000002108	-	99	47.380	ENSMZEG00005004469	gfm2	95	40.715	Maylandia_zebra
ENSCSAVG00000002108	-	98	46.083	ENSMGAG00000015100	GFM2	91	40.529	Meleagris_gallopavo
ENSCSAVG00000002108	-	99	46.189	ENSMAUG00000022103	Gfm2	91	40.473	Mesocricetus_auratus
ENSCSAVG00000002108	-	99	48.157	ENSMICG00000000749	GFM2	90	51.864	Microcebus_murinus
ENSCSAVG00000002108	-	75	47.619	ENSMOCG00000019032	-	86	47.619	Microtus_ochrogaster
ENSCSAVG00000002108	-	99	48.730	ENSMOCG00000004402	-	86	48.701	Microtus_ochrogaster
ENSCSAVG00000002108	-	99	44.545	ENSMMOG00000004758	gfm2	98	40.083	Mola_mola
ENSCSAVG00000002108	-	96	48.730	ENSMODG00000001892	GFM2	90	41.619	Monodelphis_domestica
ENSCSAVG00000002108	-	99	47.511	ENSMALG00000010323	gfm2	92	41.389	Monopterus_albus
ENSCSAVG00000002108	-	99	48.037	MGP_CAROLIEiJ_G0018814	Gfm2	73	62.712	Mus_caroli
ENSCSAVG00000002108	-	99	48.037	ENSMUSG00000021666	Gfm2	73	62.712	Mus_musculus
ENSCSAVG00000002108	-	98	48.148	MGP_PahariEiJ_G0015889	Gfm2	72	63.068	Mus_pahari
ENSCSAVG00000002108	-	99	47.806	MGP_SPRETEiJ_G0019696	Gfm2	73	62.712	Mus_spretus
ENSCSAVG00000002108	-	97	46.588	ENSMPUG00000005688	GFM2	99	37.864	Mustela_putorius_furo
ENSCSAVG00000002108	-	99	46.774	ENSMLUG00000004761	GFM2	91	40.356	Myotis_lucifugus
ENSCSAVG00000002108	-	100	48.499	ENSNGAG00000013586	Gfm2	91	41.783	Nannospalax_galili
ENSCSAVG00000002108	-	99	47.380	ENSNBRG00000009181	gfm2	94	40.669	Neolamprologus_brichardi
ENSCSAVG00000002108	-	99	48.387	ENSNLEG00000004979	GFM2	90	52.041	Nomascus_leucogenys
ENSCSAVG00000002108	-	78	49.309	ENSMEUG00000007885	-	69	50.226	Notamacropus_eugenii
ENSCSAVG00000002108	-	90	52.846	ENSOPRG00000001846	GFM2	84	52.846	Ochotona_princeps
ENSCSAVG00000002108	-	99	48.730	ENSODEG00000002193	GFM2	97	40.669	Octodon_degus
ENSCSAVG00000002108	-	99	47.273	ENSONIG00000011183	gfm2	92	40.934	Oreochromis_niloticus
ENSCSAVG00000002108	-	99	48.260	ENSOANG00000015776	GFM2	92	42.179	Ornithorhynchus_anatinus
ENSCSAVG00000002108	-	99	48.157	ENSOCUG00000005349	GFM2	93	41.313	Oryctolagus_cuniculus
ENSCSAVG00000002108	-	99	48.165	ENSORLG00000003360	gfm2	94	41.841	Oryzias_latipes
ENSCSAVG00000002108	-	98	46.437	ENSORLG00020011110	gfm2	99	41.044	Oryzias_latipes_hni
ENSCSAVG00000002108	-	99	47.936	ENSORLG00015018196	gfm2	99	41.185	Oryzias_latipes_hsok
ENSCSAVG00000002108	-	99	47.619	ENSOMEG00000013774	gfm2	94	41.737	Oryzias_melastigma
ENSCSAVG00000002108	-	98	47.926	ENSOGAG00000008961	GFM2	91	41.528	Otolemur_garnettii
ENSCSAVG00000002108	-	97	46.774	ENSOARG00000004491	GFM2	89	40.669	Ovis_aries
ENSCSAVG00000002108	-	99	48.268	ENSPPAG00000036359	GFM2	90	51.701	Pan_paniscus
ENSCSAVG00000002108	-	98	47.926	ENSPPRG00000002671	GFM2	90	51.525	Panthera_pardus
ENSCSAVG00000002108	-	99	48.157	ENSPTIG00000021698	GFM2	90	51.864	Panthera_tigris_altaica
ENSCSAVG00000002108	-	99	48.268	ENSPTRG00000016989	GFM2	90	51.701	Pan_troglodytes
ENSCSAVG00000002108	-	99	49.078	ENSPANG00000013600	GFM2	90	52.721	Papio_anubis
ENSCSAVG00000002108	-	99	48.636	ENSPKIG00000018878	gfm2	95	41.935	Paramormyrops_kingsleyae
ENSCSAVG00000002108	-	98	47.936	ENSPSIG00000012954	GFM2	94	42.996	Pelodiscus_sinensis
ENSCSAVG00000002108	-	97	46.404	ENSPMGG00000016783	gfm2	95	41.737	Periophthalmus_magnuspinnatus
ENSCSAVG00000002108	-	99	48.037	ENSPEMG00000000622	Gfm2	90	41.226	Peromyscus_maniculatus_bairdii
ENSCSAVG00000002108	-	92	43.424	ENSPMAG00000000472	gfm2	99	39.856	Petromyzon_marinus
ENSCSAVG00000002108	-	67	34.845	ENSPCIG00000020810	-	82	34.774	Phascolarctos_cinereus
ENSCSAVG00000002108	-	99	47.748	ENSPFOG00000012381	gfm2	92	41.967	Poecilia_formosa
ENSCSAVG00000002108	-	99	47.748	ENSPLAG00000014750	gfm2	95	49.837	Poecilia_latipinna
ENSCSAVG00000002108	-	99	47.973	ENSPMEG00000005813	gfm2	94	51.546	Poecilia_mexicana
ENSCSAVG00000002108	-	99	47.630	ENSPREG00000021026	gfm2	92	41.620	Poecilia_reticulata
ENSCSAVG00000002108	-	99	48.499	ENSPPYG00000015556	GFM2	90	41.864	Pongo_abelii
ENSCSAVG00000002108	-	94	45.995	ENSPCAG00000015284	GFM2	83	46.649	Procavia_capensis
ENSCSAVG00000002108	-	99	48.499	ENSPCOG00000022606	GFM2	91	41.096	Propithecus_coquereli
ENSCSAVG00000002108	-	99	47.100	ENSPVAG00000005391	GFM2	91	41.144	Pteropus_vampyrus
ENSCSAVG00000002108	-	99	47.153	ENSPNYG00000001950	gfm2	95	40.440	Pundamilia_nyererei
ENSCSAVG00000002108	-	99	48.423	ENSPNAG00000018467	gfm2	93	42.956	Pygocentrus_nattereri
ENSCSAVG00000002108	-	99	48.182	ENSRNOG00000025285	Gfm2	91	42.324	Rattus_norvegicus
ENSCSAVG00000002108	-	99	49.078	ENSRBIG00000040962	GFM2	90	52.381	Rhinopithecus_bieti
ENSCSAVG00000002108	-	99	48.848	ENSRROG00000036459	GFM2	90	52.041	Rhinopithecus_roxellana
ENSCSAVG00000002108	-	99	32.316	YJL102W	-	95	32.625	Saccharomyces_cerevisiae
ENSCSAVG00000002108	-	99	48.268	ENSSBOG00000021848	GFM2	90	51.361	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002108	-	99	48.961	ENSSHAG00000017593	GFM2	92	40.872	Sarcophilus_harrisii
ENSCSAVG00000002108	-	99	47.511	ENSSFOG00015016059	gfm2	99	41.562	Scleropages_formosus
ENSCSAVG00000002108	-	99	47.846	ENSSMAG00000010773	gfm2	96	41.620	Scophthalmus_maximus
ENSCSAVG00000002108	-	99	48.416	ENSSDUG00000021273	gfm2	97	41.828	Seriola_dumerili
ENSCSAVG00000002108	-	88	39.005	ENSSLDG00000000387	-	97	36.322	Seriola_lalandi_dorsalis
ENSCSAVG00000002108	-	99	48.190	ENSSLDG00000014952	gfm2	97	40.417	Seriola_lalandi_dorsalis
ENSCSAVG00000002108	-	77	52.083	ENSSARG00000009381	GFM2	70	52.083	Sorex_araneus
ENSCSAVG00000002108	-	99	46.288	ENSSPUG00000000593	GFM2	80	46.288	Sphenodon_punctatus
ENSCSAVG00000002108	-	99	47.619	ENSSPAG00000014163	gfm2	95	40.954	Stegastes_partitus
ENSCSAVG00000002108	-	99	47.113	ENSSSCG00000014074	GFM2	91	41.250	Sus_scrofa
ENSCSAVG00000002108	-	98	49.192	ENSTGUG00000005985	GFM2	91	43.551	Taeniopygia_guttata
ENSCSAVG00000002108	-	99	47.191	ENSTRUG00000018513	gfm2	94	42.661	Takifugu_rubripes
ENSCSAVG00000002108	-	99	47.321	ENSTNIG00000013438	gfm2	98	39.691	Tetraodon_nigroviridis
ENSCSAVG00000002108	-	92	43.880	ENSTBEG00000012713	GFM2	91	39.010	Tupaia_belangeri
ENSCSAVG00000002108	-	99	44.931	ENSTTRG00000005188	GFM2	91	38.988	Tursiops_truncatus
ENSCSAVG00000002108	-	99	47.005	ENSUMAG00000007328	GFM2	91	41.168	Ursus_maritimus
ENSCSAVG00000002108	-	74	41.244	ENSVPAG00000007367	GFM2	64	41.865	Vicugna_pacos
ENSCSAVG00000002108	-	98	46.651	ENSVVUG00000009245	GFM2	91	41.413	Vulpes_vulpes
ENSCSAVG00000002108	-	99	45.111	ENSXETG00000005076	gfm2	99	40.082	Xenopus_tropicalis
ENSCSAVG00000002108	-	99	47.630	ENSXCOG00000015007	gfm2	97	42.142	Xiphophorus_couchianus
ENSCSAVG00000002108	-	99	47.630	ENSXMAG00000000772	gfm2	93	42.281	Xiphophorus_maculatus