EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002179 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 5004 bases
Position: chrreftig_238:534169-539172
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	1	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	2	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	3	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	4	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	5	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	6	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	7	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	8	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	9	10
ENSCSAVP00000003670	zf-C2H2	PF00096.26	1.5e-43	10	10
ENSCSAVP00000003670	zf-met	PF12874.7	1.1e-15	1	2
ENSCSAVP00000003670	zf-met	PF12874.7	1.1e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003726	-	924	-	ENSCSAVP00000003670	308 (aa)	-	H2YEC2

Gene Model

Click here to download ENSCSAVG00000002179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002179's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002179	-	100	61.111	ENSCSAVG00000000690	-	100	61.111
ENSCSAVG00000002179	-	100	31.975	ENSCSAVG00000005896	-	69	32.313
ENSCSAVG00000002179	-	100	41.827	ENSCSAVG00000006650	-	97	42.478
ENSCSAVG00000002179	-	99	32.886	ENSCSAVG00000009217	-	99	32.886
ENSCSAVG00000002179	-	100	65.000	ENSCSAVG00000001830	-	99	65.000
ENSCSAVG00000002179	-	100	66.829	ENSCSAVG00000001834	-	100	66.829
ENSCSAVG00000002179	-	99	65.000	ENSCSAVG00000003690	-	96	65.000
ENSCSAVG00000002179	-	100	60.424	ENSCSAVG00000000673	-	100	60.424
ENSCSAVG00000002179	-	98	42.105	ENSCSAVG00000004543	-	99	36.181
ENSCSAVG00000002179	-	100	68.000	ENSCSAVG00000000655	-	99	68.000
ENSCSAVG00000002179	-	100	52.941	ENSCSAVG00000010960	-	100	52.941
ENSCSAVG00000002179	-	100	41.121	ENSCSAVG00000011749	-	74	41.121
ENSCSAVG00000002179	-	99	39.048	ENSCSAVG00000009819	-	96	39.048
ENSCSAVG00000002179	-	100	41.096	ENSCSAVG00000001949	-	99	41.096
ENSCSAVG00000002179	-	100	44.828	ENSCSAVG00000003895	-	100	44.828
ENSCSAVG00000002179	-	100	58.599	ENSCSAVG00000009583	-	99	61.947
ENSCSAVG00000002179	-	99	53.448	ENSCSAVG00000000520	-	100	53.448
ENSCSAVG00000002179	-	99	68.519	ENSCSAVG00000008862	-	99	68.519
ENSCSAVG00000002179	-	99	61.631	ENSCSAVG00000007918	-	100	61.688
ENSCSAVG00000002179	-	99	41.053	ENSCSAVG00000006028	-	54	41.053
ENSCSAVG00000002179	-	100	46.403	ENSCSAVG00000010156	-	98	46.789
ENSCSAVG00000002179	-	100	54.072	ENSCSAVG00000006141	-	100	54.167
ENSCSAVG00000002179	-	100	49.839	ENSCSAVG00000006608	-	100	49.839
ENSCSAVG00000002179	-	100	65.455	ENSCSAVG00000001989	-	100	63.312
ENSCSAVG00000002179	-	100	59.740	ENSCSAVG00000004499	-	100	59.740
ENSCSAVG00000002179	-	99	56.856	ENSCSAVG00000009953	-	96	58.958
ENSCSAVG00000002179	-	100	67.123	ENSCSAVG00000004703	-	100	67.123
ENSCSAVG00000002179	-	100	49.515	ENSCSAVG00000007589	-	100	49.515
ENSCSAVG00000002179	-	100	54.237	ENSCSAVG00000001808	-	100	54.237
ENSCSAVG00000002179	-	100	57.576	ENSCSAVG00000000293	-	100	57.576
ENSCSAVG00000002179	-	100	43.103	ENSCSAVG00000005904	-	96	43.103
ENSCSAVG00000002179	-	100	61.111	ENSCSAVG00000000649	-	99	61.111
ENSCSAVG00000002179	-	100	62.258	ENSCSAVG00000000642	-	100	62.381
ENSCSAVG00000002179	-	100	56.497	ENSCSAVG00000004762	-	100	56.497
ENSCSAVG00000002179	-	100	48.990	ENSCSAVG00000009574	-	99	46.667
ENSCSAVG00000002179	-	100	47.440	ENSCSAVG00000004678	-	99	49.246
ENSCSAVG00000002179	-	99	33.974	ENSCSAVG00000006745	-	98	33.974
ENSCSAVG00000002179	-	99	31.379	ENSCSAVG00000006729	-	70	31.379
ENSCSAVG00000002179	-	95	36.054	ENSCSAVG00000009739	-	62	36.054
ENSCSAVG00000002179	-	100	46.429	ENSCSAVG00000011146	-	83	46.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002179	-	99	47.191	ENSACIG00000017647	-	88	44.904	Amphilophus_citrinellus
ENSCSAVG00000002179	-	98	52.632	ENSAOCG00000003277	-	72	52.632	Amphiprion_ocellaris
ENSCSAVG00000002179	-	100	48.980	ENSAPEG00000016601	-	83	48.980	Amphiprion_percula
ENSCSAVG00000002179	-	100	41.368	ENSACLG00000015989	-	88	41.852	Astatotilapia_calliptera
ENSCSAVG00000002179	-	99	43.284	ENSACLG00000005615	-	57	43.284	Astatotilapia_calliptera
ENSCSAVG00000002179	-	99	42.771	ENSCGRG00001004047	-	66	45.918	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002179	-	99	41.767	ENSCSEG00000001771	-	59	41.118	Cynoglossus_semilaevis
ENSCSAVG00000002179	-	100	47.018	ENSEBUG00000002537	-	87	47.018	Eptatretus_burgeri
ENSCSAVG00000002179	-	99	51.311	ENSEBUG00000002589	-	86	49.495	Eptatretus_burgeri
ENSCSAVG00000002179	-	100	48.148	ENSEBUG00000011244	-	78	48.148	Eptatretus_burgeri
ENSCSAVG00000002179	-	100	41.042	ENSHBUG00000016546	-	65	41.042	Haplochromis_burtoni
ENSCSAVG00000002179	-	99	43.284	ENSHBUG00000020071	-	57	43.284	Haplochromis_burtoni
ENSCSAVG00000002179	-	99	46.383	ENSHBUG00000012758	-	88	44.262	Haplochromis_burtoni
ENSCSAVG00000002179	-	99	41.971	ENSMZEG00005020731	-	84	41.971	Maylandia_zebra
ENSCSAVG00000002179	-	100	41.368	ENSMZEG00005027844	-	65	41.368	Maylandia_zebra
ENSCSAVG00000002179	-	99	48.052	MGP_CAROLIEiJ_G0029612	Zfp141	59	48.052	Mus_caroli
ENSCSAVG00000002179	-	99	48.052	ENSMUSG00000092416	Zfp141	59	48.052	Mus_musculus
ENSCSAVG00000002179	-	99	49.545	MGP_SPRETEiJ_G0030709	-	80	49.545	Mus_spretus
ENSCSAVG00000002179	-	99	45.238	ENSNBRG00000023229	-	85	45.238	Neolamprologus_brichardi
ENSCSAVG00000002179	-	100	41.445	ENSONIG00000014100	-	88	42.532	Oreochromis_niloticus
ENSCSAVG00000002179	-	99	44.718	ENSONIG00000018188	-	100	44.718	Oreochromis_niloticus
ENSCSAVG00000002179	-	100	45.405	ENSONIG00000006238	-	99	45.405	Oreochromis_niloticus
ENSCSAVG00000002179	-	100	37.186	ENSPFOG00000007708	-	99	35.294	Poecilia_formosa
ENSCSAVG00000002179	-	99	45.238	ENSPLAG00000010448	-	58	45.238	Poecilia_latipinna
ENSCSAVG00000002179	-	99	44.771	ENSPCAG00000001613	-	71	45.603	Procavia_capensis
ENSCSAVG00000002179	-	99	43.609	ENSPNYG00000005671	-	74	43.609	Pundamilia_nyererei
ENSCSAVG00000002179	-	99	50.220	ENSPNAG00000015131	-	88	50.220	Pygocentrus_nattereri
ENSCSAVG00000002179	-	100	49.462	ENSSFOG00015000652	ZNF775	86	49.351	Scleropages_formosus
ENSCSAVG00000002179	-	99	39.412	ENSSDUG00000004089	-	97	37.453	Seriola_dumerili
ENSCSAVG00000002179	-	99	43.697	ENSSDUG00000005401	-	87	43.697	Seriola_dumerili
ENSCSAVG00000002179	-	100	44.700	ENSSDUG00000020595	-	85	44.700	Seriola_dumerili
ENSCSAVG00000002179	-	99	43.986	ENSSPUG00000007092	-	59	43.986	Sphenodon_punctatus
ENSCSAVG00000002179	-	99	45.894	ENSSPUG00000007064	-	97	44.550	Sphenodon_punctatus
ENSCSAVG00000002179	-	99	39.918	ENSSPAG00000009587	-	94	39.918	Stegastes_partitus
ENSCSAVG00000002179	-	100	37.333	ENSSSCG00000032098	-	82	37.589	Sus_scrofa
ENSCSAVG00000002179	-	100	49.275	ENSTTRG00000004891	-	60	49.275	Tursiops_truncatus
ENSCSAVG00000002179	-	100	40.217	ENSXETG00000015125	-	96	40.217	Xenopus_tropicalis
ENSCSAVG00000002179	-	99	47.598	ENSXETG00000030967	-	99	47.598	Xenopus_tropicalis