EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002180 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 8195 bases
Position: chrreftig_41:17223-25417
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003671	ResIII	PF04851.15	3.1e-05	1	1
ENSCSAVP00000003671	DEAD	PF00270.29	6.4e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003727	-	1667	-	ENSCSAVP00000003671	380 (aa)	-	H2YEC3
ENSCSAVT00000003728	-	517	-	ENSCSAVP00000003672	78 (aa)	-	H2YEC4

Gene Model

Click here to download ENSCSAVG00000002180's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002180's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002180	-	73	32.867	ENSCSAVG00000004191	-	56	32.867
ENSCSAVG00000002180	-	86	31.098	ENSCSAVG00000000630	-	85	31.098
ENSCSAVG00000002180	-	85	38.154	ENSCSAVG00000011566	-	71	38.154
ENSCSAVG00000002180	-	84	34.049	ENSCSAVG00000000522	-	76	34.049
ENSCSAVG00000002180	-	86	34.311	ENSCSAVG00000003023	-	58	35.435
ENSCSAVG00000002180	-	91	30.571	ENSCSAVG00000003835	-	86	30.571
ENSCSAVG00000002180	-	96	45.109	ENSCSAVG00000002353	-	85	41.983
ENSCSAVG00000002180	-	83	31.761	ENSCSAVG00000002162	-	74	31.562
ENSCSAVG00000002180	-	86	36.086	ENSCSAVG00000008916	-	91	34.314
ENSCSAVG00000002180	-	86	31.307	ENSCSAVG00000009920	-	87	31.307
ENSCSAVG00000002180	-	83	34.049	ENSCSAVG00000004895	-	59	34.049
ENSCSAVG00000002180	-	90	39.489	ENSCSAVG00000004304	-	56	39.489
ENSCSAVG00000002180	-	82	39.181	ENSCSAVG00000004158	-	70	39.181

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002180	-	99	72.178	ENSG00000198231	DDX42	54	71.802	Homo_sapiens
ENSCSAVG00000002180	-	99	72.703	ENSACIG00000007376	ddx42	50	72.656	Amphilophus_citrinellus
ENSCSAVG00000002180	-	99	72.178	ENSANAG00000035693	DDX42	54	71.802	Aotus_nancymaae
ENSCSAVG00000002180	-	99	70.052	ENSBTAG00000021058	DDX42	53	70.052	Bos_taurus
ENSCSAVG00000002180	-	99	72.178	ENSCJAG00000019649	DDX42	53	71.802	Callithrix_jacchus
ENSCSAVG00000002180	-	99	71.615	ENSTSYG00000001380	DDX42	51	67.532	Carlito_syrichta
ENSCSAVG00000002180	-	96	60.274	ENSCAPG00000013621	DDX42	52	60.274	Cavia_aperea
ENSCSAVG00000002180	-	99	72.178	ENSCCAG00000020612	DDX42	54	71.802	Cebus_capucinus
ENSCSAVG00000002180	-	99	72.178	ENSCATG00000030490	DDX42	50	72.178	Cercocebus_atys
ENSCSAVG00000002180	-	99	90.789	ENSCING00000001837	-	84	90.789	Ciona_intestinalis
ENSCSAVG00000002180	-	99	72.178	ENSCANG00000034663	DDX42	55	71.802	Colobus_angolensis_palliatus
ENSCSAVG00000002180	-	99	71.615	ENSEASG00005013089	DDX42	54	71.615	Equus_asinus_asinus
ENSCSAVG00000002180	-	99	72.178	ENSGGOG00000006779	DDX42	54	71.802	Gorilla_gorilla
ENSCSAVG00000002180	-	99	72.656	ENSHCOG00000003357	ddx42	56	72.396	Hippocampus_comes
ENSCSAVG00000002180	-	99	72.178	ENSMFAG00000031356	DDX42	50	72.178	Macaca_fascicularis
ENSCSAVG00000002180	-	99	71.802	ENSMMUG00000016762	DDX42	53	71.802	Macaca_mulatta
ENSCSAVG00000002180	-	99	72.178	ENSMNEG00000038250	DDX42	50	72.178	Macaca_nemestrina
ENSCSAVG00000002180	-	99	72.178	ENSMLEG00000043080	DDX42	50	67.442	Mandrillus_leucophaeus
ENSCSAVG00000002180	-	99	71.875	ENSMAUG00000020774	-	51	71.875	Mesocricetus_auratus
ENSCSAVG00000002180	-	99	71.875	MGP_PahariEiJ_G0018444	-	54	71.875	Mus_pahari
ENSCSAVG00000002180	-	99	72.178	ENSNLEG00000004248	DDX42	55	71.802	Nomascus_leucogenys
ENSCSAVG00000002180	-	96	67.213	ENSOANG00000000265	DDX42	68	67.213	Ornithorhynchus_anatinus
ENSCSAVG00000002180	-	99	72.178	ENSPPAG00000007496	DDX42	54	71.802	Pan_paniscus
ENSCSAVG00000002180	-	99	72.178	ENSPTRG00000009523	DDX42	54	71.802	Pan_troglodytes
ENSCSAVG00000002180	-	99	72.178	ENSPANG00000020990	DDX42	50	72.178	Papio_anubis
ENSCSAVG00000002180	-	100	69.091	ENSPMAG00000005580	ddx42	51	69.091	Petromyzon_marinus
ENSCSAVG00000002180	-	88	69.527	ENSPCOG00000001559	DDX42	50	70.336	Propithecus_coquereli
ENSCSAVG00000002180	-	99	72.895	ENSPNAG00000017352	ddx42	50	69.271	Pygocentrus_nattereri
ENSCSAVG00000002180	-	99	72.178	ENSRBIG00000004781	DDX42	55	71.802	Rhinopithecus_bieti
ENSCSAVG00000002180	-	99	72.178	ENSSBOG00000029624	DDX42	54	71.802	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002180	-	99	49.211	ENSSHAG00000007919	-	54	49.211	Sarcophilus_harrisii
ENSCSAVG00000002180	-	99	71.354	ENSSMAG00000009077	ddx42	51	71.354	Scophthalmus_maximus