EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000002208 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 7568 bases
Position: chrreftig_30:783929-791496
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003724	GTP_EFTU	PF00009.27	1.6e-28	1	1
ENSCSAVP00000003726	GTP_EFTU	PF00009.27	1.8e-28	1	1
ENSCSAVP00000003727	GTP_EFTU	PF00009.27	2.2e-25	1	1
ENSCSAVP00000003725	GTP_EFTU	PF00009.27	1.3e-22	1	1
ENSCSAVP00000003724	MMR_HSR1	PF01926.23	7.6e-06	1	1
ENSCSAVP00000003726	MMR_HSR1	PF01926.23	8e-06	1	1
ENSCSAVP00000003727	MMR_HSR1	PF01926.23	1.4e-05	1	1
ENSCSAVP00000003727	GTP_EFTU_D2	PF03144.25	8.9e-09	1	1
ENSCSAVP00000003725	GTP_EFTU_D2	PF03144.25	1.3e-08	1	1
ENSCSAVP00000003724	GTP_EFTU_D2	PF03144.25	1.4e-08	1	1
ENSCSAVP00000003726	GTP_EFTU_D2	PF03144.25	1.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003784	-	754	-	ENSCSAVP00000003727	244 (aa)	-	H2YEH9
ENSCSAVT00000003782	-	1680	-	ENSCSAVP00000003725	539 (aa)	-	H2YEH7
ENSCSAVT00000003783	-	1743	-	ENSCSAVP00000003726	581 (aa)	-	H2YEH8
ENSCSAVT00000003781	-	2210	-	ENSCSAVP00000003724	565 (aa)	-	H2YEH6

Gene Model

Click here to download ENSCSAVG00000002208's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002208's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002208	-	100	55.195	ENSG00000132394	EEFSEC	97	65.196	Homo_sapiens
ENSCSAVG00000002208	-	100	59.396	ENSAPOG00000015931	eefsec	98	57.639	Acanthochromis_polyacanthus
ENSCSAVG00000002208	-	81	54.072	ENSAMEG00000015165	EEFSEC	87	54.398	Ailuropoda_melanoleuca
ENSCSAVG00000002208	-	83	55.212	ENSACIG00000022407	eefsec	99	66.165	Amphilophus_citrinellus
ENSCSAVG00000002208	-	100	59.732	ENSAOCG00000008603	eefsec	98	58.160	Amphiprion_ocellaris
ENSCSAVG00000002208	-	100	59.732	ENSAPEG00000017090	eefsec	98	57.812	Amphiprion_percula
ENSCSAVG00000002208	-	100	59.396	ENSATEG00000002753	eefsec	99	57.439	Anabas_testudineus
ENSCSAVG00000002208	-	79	56.808	ENSAPLG00000006745	EEFSEC	99	56.808	Anas_platyrhynchos
ENSCSAVG00000002208	-	100	55.195	ENSANAG00000032691	EEFSEC	97	64.706	Aotus_nancymaae
ENSCSAVG00000002208	-	100	59.060	ENSACLG00000024565	eefsec	97	65.414	Astatotilapia_calliptera
ENSCSAVG00000002208	-	100	57.047	ENSAMXG00000002260	eefsec	98	57.290	Astyanax_mexicanus
ENSCSAVG00000002208	-	100	55.960	ENSBTAG00000030962	EEFSEC	98	60.949	Bos_taurus
ENSCSAVG00000002208	-	96	32.979	WBGene00008133	efsc-1	90	31.518	Caenorhabditis_elegans
ENSCSAVG00000002208	-	100	54.870	ENSCJAG00000005387	EEFSEC	97	64.216	Callithrix_jacchus
ENSCSAVG00000002208	-	100	54.167	ENSCAFG00000004135	EEFSEC	80	51.888	Canis_familiaris
ENSCSAVG00000002208	-	100	54.167	ENSCAFG00020004811	EEFSEC	99	51.888	Canis_lupus_dingo
ENSCSAVG00000002208	-	100	56.463	ENSCHIG00000021838	EEFSEC	99	52.632	Capra_hircus
ENSCSAVG00000002208	-	100	55.195	ENSTSYG00000012922	EEFSEC	97	65.196	Carlito_syrichta
ENSCSAVG00000002208	-	88	47.551	ENSCAPG00000000084	EEFSEC	98	47.347	Cavia_aperea
ENSCSAVG00000002208	-	100	57.143	ENSCPOG00000024352	EEFSEC	98	63.740	Cavia_porcellus
ENSCSAVG00000002208	-	100	54.870	ENSCCAG00000031336	EEFSEC	97	64.216	Cebus_capucinus
ENSCSAVG00000002208	-	100	55.519	ENSCATG00000019414	EEFSEC	97	66.176	Cercocebus_atys
ENSCSAVG00000002208	-	100	57.483	ENSCLAG00000006973	EEFSEC	98	63.740	Chinchilla_lanigera
ENSCSAVG00000002208	-	100	55.195	ENSCSAG00000008599	EEFSEC	99	51.901	Chlorocebus_sabaeus
ENSCSAVG00000002208	-	100	55.957	ENSCPBG00000014356	EEFSEC	81	63.258	Chrysemys_picta_bellii
ENSCSAVG00000002208	-	100	55.519	ENSCANG00000031492	EEFSEC	96	66.176	Colobus_angolensis_palliatus
ENSCSAVG00000002208	-	100	56.803	ENSCGRG00001018089	Eefsec	99	53.378	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002208	-	99	56.507	ENSCGRG00000010063	Eefsec	98	62.835	Cricetulus_griseus_crigri
ENSCSAVG00000002208	-	100	60.067	ENSCSEG00000003008	eefsec	98	65.789	Cynoglossus_semilaevis
ENSCSAVG00000002208	-	100	59.732	ENSCVAG00000005381	eefsec	98	57.618	Cyprinodon_variegatus
ENSCSAVG00000002208	-	100	58.725	ENSDARG00000004696	eefsec	99	57.216	Danio_rerio
ENSCSAVG00000002208	-	100	54.605	ENSDNOG00000008925	EEFSEC	99	52.833	Dasypus_novemcinctus
ENSCSAVG00000002208	-	72	63.107	ENSDORG00000000264	Eefsec	99	63.107	Dipodomys_ordii
ENSCSAVG00000002208	-	98	53.381	FBgn0034627	eEFSec	95	48.544	Drosophila_melanogaster
ENSCSAVG00000002208	-	100	55.082	ENSETEG00000007406	EEFSEC	80	54.321	Echinops_telfairi
ENSCSAVG00000002208	-	78	74.118	ENSEBUG00000015029	eefsec	80	70.000	Eptatretus_burgeri
ENSCSAVG00000002208	-	100	55.049	ENSEASG00005006786	EEFSEC	99	51.987	Equus_asinus_asinus
ENSCSAVG00000002208	-	100	55.049	ENSECAG00000016565	EEFSEC	99	52.318	Equus_caballus
ENSCSAVG00000002208	-	100	61.458	ENSELUG00000016632	eefsec	98	56.207	Esox_lucius
ENSCSAVG00000002208	-	100	55.161	ENSFCAG00000006153	EEFSEC	97	64.563	Felis_catus
ENSCSAVG00000002208	-	88	54.545	ENSFALG00000007901	EEFSEC	99	55.165	Ficedula_albicollis
ENSCSAVG00000002208	-	88	51.837	ENSFDAG00000010243	EEFSEC	99	51.633	Fukomys_damarensis
ENSCSAVG00000002208	-	99	59.797	ENSFHEG00000007155	eefsec	98	56.846	Fundulus_heteroclitus
ENSCSAVG00000002208	-	99	54.545	ENSGMOG00000007705	eefsec	98	54.087	Gadus_morhua
ENSCSAVG00000002208	-	100	55.556	ENSGALG00000038684	EEFSEC	98	56.068	Gallus_gallus
ENSCSAVG00000002208	-	99	60.811	ENSGAFG00000021692	eefsec	98	58.246	Gambusia_affinis
ENSCSAVG00000002208	-	100	58.863	ENSGACG00000000793	eefsec	99	56.870	Gasterosteus_aculeatus
ENSCSAVG00000002208	-	100	55.978	ENSGAGG00000002059	EEFSEC	97	55.043	Gopherus_agassizii
ENSCSAVG00000002208	-	92	53.229	ENSGGOG00000001445	EEFSEC	95	69.355	Gorilla_gorilla
ENSCSAVG00000002208	-	100	59.060	ENSHBUG00000008917	eefsec	96	58.607	Haplochromis_burtoni
ENSCSAVG00000002208	-	100	57.483	ENSHGLG00000000094	EEFSEC	99	58.580	Heterocephalus_glaber_female
ENSCSAVG00000002208	-	100	57.483	ENSHGLG00100011393	EEFSEC	94	53.220	Heterocephalus_glaber_male
ENSCSAVG00000002208	-	99	59.933	ENSHCOG00000004193	eefsec	99	57.168	Hippocampus_comes
ENSCSAVG00000002208	-	100	56.757	ENSIPUG00000017291	eefsec	97	58.949	Ictalurus_punctatus
ENSCSAVG00000002208	-	88	52.049	ENSSTOG00000019802	EEFSEC	99	52.058	Ictidomys_tridecemlineatus
ENSCSAVG00000002208	-	83	53.333	ENSJJAG00000020703	-	98	63.740	Jaculus_jaculus
ENSCSAVG00000002208	-	100	60.135	ENSKMAG00000019907	eefsec	98	57.821	Kryptolebias_marmoratus
ENSCSAVG00000002208	-	100	59.060	ENSLBEG00000017908	eefsec	98	57.093	Labrus_bergylta
ENSCSAVG00000002208	-	95	53.551	ENSLACG00000013137	EEFSEC	99	53.359	Latimeria_chalumnae
ENSCSAVG00000002208	-	100	60.067	ENSLOCG00000014535	eefsec	98	58.115	Lepisosteus_oculatus
ENSCSAVG00000002208	-	100	57.679	ENSLAFG00000001997	EEFSEC	99	52.453	Loxodonta_africana
ENSCSAVG00000002208	-	100	55.519	ENSMFAG00000042128	EEFSEC	99	66.176	Macaca_fascicularis
ENSCSAVG00000002208	-	100	55.344	ENSMMUG00000018663	EEFSEC	97	66.176	Macaca_mulatta
ENSCSAVG00000002208	-	100	55.519	ENSMNEG00000028574	EEFSEC	97	66.176	Macaca_nemestrina
ENSCSAVG00000002208	-	89	51.717	ENSMLEG00000041771	EEFSEC	93	51.919	Mandrillus_leucophaeus
ENSCSAVG00000002208	-	100	60.403	ENSMAMG00000023964	eefsec	99	65.672	Mastacembelus_armatus
ENSCSAVG00000002208	-	83	55.212	ENSMZEG00005009380	eefsec	97	65.414	Maylandia_zebra
ENSCSAVG00000002208	-	69	56.117	ENSMGAG00000007243	EEFSEC	96	56.117	Meleagris_gallopavo
ENSCSAVG00000002208	-	100	56.803	ENSMAUG00000011197	Eefsec	98	63.359	Mesocricetus_auratus
ENSCSAVG00000002208	-	100	56.803	ENSMOCG00000017748	Eefsec	98	62.977	Microtus_ochrogaster
ENSCSAVG00000002208	-	83	54.440	ENSMMOG00000021820	eefsec	99	63.603	Mola_mola
ENSCSAVG00000002208	-	100	56.169	ENSMODG00000008034	EEFSEC	80	56.377	Monodelphis_domestica
ENSCSAVG00000002208	-	100	60.067	ENSMALG00000016211	eefsec	98	60.116	Monopterus_albus
ENSCSAVG00000002208	-	100	56.803	MGP_CAROLIEiJ_G0028627	Eefsec	98	63.359	Mus_caroli
ENSCSAVG00000002208	-	100	57.143	ENSMUSG00000033216	Eefsec	98	63.740	Mus_musculus
ENSCSAVG00000002208	-	100	56.803	MGP_PahariEiJ_G0022366	Eefsec	98	63.359	Mus_pahari
ENSCSAVG00000002208	-	100	57.143	MGP_SPRETEiJ_G0029640	Eefsec	98	63.740	Mus_spretus
ENSCSAVG00000002208	-	100	55.195	ENSMPUG00000017340	EEFSEC	95	52.649	Mustela_putorius_furo
ENSCSAVG00000002208	-	89	51.111	ENSMLUG00000004261	EEFSEC	99	51.313	Myotis_lucifugus
ENSCSAVG00000002208	-	83	52.157	ENSNGAG00000023278	-	98	62.595	Nannospalax_galili
ENSCSAVG00000002208	-	100	59.060	ENSNBRG00000002387	eefsec	97	65.414	Neolamprologus_brichardi
ENSCSAVG00000002208	-	100	55.519	ENSNLEG00000014303	EEFSEC	97	65.686	Nomascus_leucogenys
ENSCSAVG00000002208	-	88	53.608	ENSMEUG00000005747	EEFSEC	99	53.002	Notamacropus_eugenii
ENSCSAVG00000002208	-	100	55.921	ENSOPRG00000011276	EEFSEC	99	53.078	Ochotona_princeps
ENSCSAVG00000002208	-	100	57.483	ENSODEG00000002928	EEFSEC	98	62.977	Octodon_degus
ENSCSAVG00000002208	-	87	50.509	ENSONIG00000019038	eefsec	100	51.767	Oreochromis_niloticus
ENSCSAVG00000002208	-	87	52.301	ENSOANG00000009108	EEFSEC	99	51.883	Ornithorhynchus_anatinus
ENSCSAVG00000002208	-	100	55.921	ENSOCUG00000016517	EEFSEC	99	53.078	Oryctolagus_cuniculus
ENSCSAVG00000002208	-	100	58.389	ENSORLG00000001377	eefsec	98	65.789	Oryzias_latipes
ENSCSAVG00000002208	-	100	58.389	ENSORLG00020000729	eefsec	98	65.789	Oryzias_latipes_hni
ENSCSAVG00000002208	-	100	58.389	ENSORLG00015001986	eefsec	98	56.696	Oryzias_latipes_hsok
ENSCSAVG00000002208	-	98	49.906	ENSOMEG00000010071	eefsec	96	49.440	Oryzias_melastigma
ENSCSAVG00000002208	-	79	54.943	ENSOGAG00000014084	EEFSEC	97	54.943	Otolemur_garnettii
ENSCSAVG00000002208	-	69	52.800	ENSOARG00000004600	EEFSEC	100	53.034	Ovis_aries
ENSCSAVG00000002208	-	100	55.195	ENSPPAG00000030936	EEFSEC	99	65.196	Pan_paniscus
ENSCSAVG00000002208	-	100	55.844	ENSPPRG00000002846	EEFSEC	97	65.196	Panthera_pardus
ENSCSAVG00000002208	-	93	51.145	ENSPTIG00000013855	EEFSEC	94	51.527	Panthera_tigris_altaica
ENSCSAVG00000002208	-	100	55.195	ENSPTRG00000015353	EEFSEC	97	65.196	Pan_troglodytes
ENSCSAVG00000002208	-	100	55.519	ENSPANG00000017041	EEFSEC	97	66.176	Papio_anubis
ENSCSAVG00000002208	-	100	61.074	ENSPKIG00000005220	eefsec	97	65.789	Paramormyrops_kingsleyae
ENSCSAVG00000002208	-	100	55.442	ENSPSIG00000015135	EEFSEC	97	56.788	Pelodiscus_sinensis
ENSCSAVG00000002208	-	100	60.606	ENSPMGG00000020300	eefsec	99	57.168	Periophthalmus_magnuspinnatus
ENSCSAVG00000002208	-	100	56.803	ENSPEMG00000013677	Eefsec	98	62.977	Peromyscus_maniculatus_bairdii
ENSCSAVG00000002208	-	100	60.067	ENSPMAG00000006779	eefsec	98	58.052	Petromyzon_marinus
ENSCSAVG00000002208	-	87	53.333	ENSPCIG00000020494	EEFSEC	99	53.125	Phascolarctos_cinereus
ENSCSAVG00000002208	-	99	60.135	ENSPFOG00000003748	eefsec	98	57.368	Poecilia_formosa
ENSCSAVG00000002208	-	99	60.135	ENSPLAG00000018012	eefsec	98	57.368	Poecilia_latipinna
ENSCSAVG00000002208	-	99	60.473	ENSPMEG00000001202	eefsec	98	57.719	Poecilia_mexicana
ENSCSAVG00000002208	-	99	60.473	ENSPREG00000012235	eefsec	98	57.544	Poecilia_reticulata
ENSCSAVG00000002208	-	100	54.870	ENSPPYG00000013436	EEFSEC	99	51.815	Pongo_abelii
ENSCSAVG00000002208	-	77	67.273	ENSPCAG00000005883	EEFSEC	99	47.575	Procavia_capensis
ENSCSAVG00000002208	-	100	57.198	ENSPCOG00000023432	EEFSEC	98	67.000	Propithecus_coquereli
ENSCSAVG00000002208	-	77	53.012	ENSPVAG00000007070	EEFSEC	64	63.178	Pteropus_vampyrus
ENSCSAVG00000002208	-	100	59.060	ENSPNYG00000005726	eefsec	97	65.414	Pundamilia_nyererei
ENSCSAVG00000002208	-	100	56.711	ENSPNAG00000016724	eefsec	99	56.678	Pygocentrus_nattereri
ENSCSAVG00000002208	-	100	56.803	ENSRNOG00000012954	Eefsec	98	63.359	Rattus_norvegicus
ENSCSAVG00000002208	-	100	55.519	ENSRBIG00000032635	EEFSEC	97	66.176	Rhinopithecus_bieti
ENSCSAVG00000002208	-	77	56.118	ENSRROG00000030260	-	84	65.873	Rhinopithecus_roxellana
ENSCSAVG00000002208	-	99	54.615	ENSSBOG00000031478	EEFSEC	98	64.796	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002208	-	87	52.708	ENSSHAG00000014760	EEFSEC	99	51.875	Sarcophilus_harrisii
ENSCSAVG00000002208	-	100	58.000	ENSSFOG00015021109	eefsec	98	56.853	Scleropages_formosus
ENSCSAVG00000002208	-	100	59.396	ENSSMAG00000001454	eefsec	98	56.822	Scophthalmus_maximus
ENSCSAVG00000002208	-	100	59.797	ENSSDUG00000007924	eefsec	99	65.116	Seriola_dumerili
ENSCSAVG00000002208	-	100	60.135	ENSSLDG00000024985	eefsec	98	57.244	Seriola_lalandi_dorsalis
ENSCSAVG00000002208	-	69	73.750	ENSSARG00000003789	-	56	70.787	Sorex_araneus
ENSCSAVG00000002208	-	87	54.167	ENSSPUG00000004191	EEFSEC	100	54.357	Sphenodon_punctatus
ENSCSAVG00000002208	-	100	59.060	ENSSPAG00000001320	eefsec	99	65.414	Stegastes_partitus
ENSCSAVG00000002208	-	100	55.814	ENSSSCG00000011619	EEFSEC	98	62.454	Sus_scrofa
ENSCSAVG00000002208	-	100	55.556	ENSTGUG00000007895	EEFSEC	99	55.461	Taeniopygia_guttata
ENSCSAVG00000002208	-	99	60.473	ENSTRUG00000010327	eefsec	98	57.958	Takifugu_rubripes
ENSCSAVG00000002208	-	99	60.135	ENSTNIG00000003225	eefsec	99	57.461	Tetraodon_nigroviridis
ENSCSAVG00000002208	-	100	55.116	ENSTTRG00000000994	EEFSEC	99	51.926	Tursiops_truncatus
ENSCSAVG00000002208	-	100	55.195	ENSUAMG00000017283	EEFSEC	99	52.893	Ursus_americanus
ENSCSAVG00000002208	-	82	53.348	ENSVVUG00000018372	EEFSEC	93	53.348	Vulpes_vulpes
ENSCSAVG00000002208	-	100	60.884	ENSXETG00000002066	eefsec	98	58.737	Xenopus_tropicalis
ENSCSAVG00000002208	-	99	61.149	ENSXCOG00000019916	eefsec	98	57.821	Xiphophorus_couchianus
ENSCSAVG00000002208	-	99	60.811	ENSXMAG00000001839	eefsec	98	57.645	Xiphophorus_maculatus