EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000002293 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
38092 bases
Position
chrreftig_143:921468-959559
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000003882CPSF_APF03178.155.7e-8511
ENSCSAVP00000003883CPSF_APF03178.155.8e-8511
ENSCSAVP00000003880CPSF_APF03178.158.1e-8511
ENSCSAVP00000003879CPSF_APF03178.158.3e-8511
ENSCSAVP00000003881CPSF_APF03178.156.2e-7511
ENSCSAVP00000003884CPSF_APF03178.151.2e-4111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000003937-4362-ENSCSAVP000000038791441 (aa)-H2YEY1
ENSCSAVT00000003939-3852-ENSCSAVP000000038811283 (aa)-H2YEY3
ENSCSAVT00000003940-4006-ENSCSAVP000000038821333 (aa)-H2YEY4
ENSCSAVT00000003938-4342-ENSCSAVP000000038801428 (aa)-H2YEY2
ENSCSAVT00000003942-906-ENSCSAVP00000003884217 (aa)-H2YEY6
ENSCSAVT00000003941-3996-ENSCSAVP000000038831331 (aa)-H2YEY5
Gene Model
Click here to download ENSCSAVG00000002293's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002293's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000002293-9849.765ENSG00000071894CPSF19947.802Homo_sapiens
ENSCSAVG00000002293-9951.163ENSAPOG00000019621cpsf19948.113Acanthochromis_polyacanthus
ENSCSAVG00000002293-9945.845ENSAMEG00000005557CPSF19946.742Ailuropoda_melanoleuca
ENSCSAVG00000002293-9953.241ENSACIG00000006112cpsf19948.460Amphilophus_citrinellus
ENSCSAVG00000002293-9951.163ENSAOCG00000007120cpsf19948.868Amphiprion_ocellaris
ENSCSAVG00000002293-9951.163ENSAPEG00000005755cpsf19948.697Amphiprion_percula
ENSCSAVG00000002293-9950.698ENSATEG00000011097cpsf19948.318Anabas_testudineus
ENSCSAVG00000002293-9345.254ENSACAG00000009655CPSF19945.428Anolis_carolinensis
ENSCSAVG00000002293-9849.765ENSANAG00000036514CPSF19948.077Aotus_nancymaae
ENSCSAVG00000002293-9953.241ENSACLG00000012231cpsf19948.242Astatotilapia_calliptera
ENSCSAVG00000002293-9850.704ENSAMXG00000008485cpsf19946.000Astyanax_mexicanus
ENSCSAVG00000002293-9947.134ENSBTAG00000008355CPSF19947.286Bos_taurus
ENSCSAVG00000002293-9736.111WBGene00022301cpsf-19939.255Caenorhabditis_elegans
ENSCSAVG00000002293-9849.765ENSCJAG00000021421CPSF19948.008Callithrix_jacchus
ENSCSAVG00000002293-9849.765ENSCAFG00000001600CPSF19947.909Canis_familiaris
ENSCSAVG00000002293-9849.765ENSCAFG00020020821CPSF19948.148Canis_lupus_dingo
ENSCSAVG00000002293-9946.254ENSCHIG00000015833CPSF19946.254Capra_hircus
ENSCSAVG00000002293-9949.302ENSTSYG00000028560CPSF19947.871Carlito_syrichta
ENSCSAVG00000002293-9849.765ENSCAPG00000014921CPSF19947.650Cavia_aperea
ENSCSAVG00000002293-9849.765ENSCPOG00000011448CPSF19947.734Cavia_porcellus
ENSCSAVG00000002293-9849.765ENSCCAG00000037658CPSF19948.008Cebus_capucinus
ENSCSAVG00000002293-9849.765ENSCATG00000037234CPSF19951.632Cercocebus_atys
ENSCSAVG00000002293-9849.765ENSCLAG00000012166CPSF19948.454Chinchilla_lanigera
ENSCSAVG00000002293-9849.765ENSCSAG00000008502CPSF19947.835Chlorocebus_sabaeus
ENSCSAVG00000002293-9948.821ENSCPBG00000018910CPSF19648.821Chrysemys_picta_bellii
ENSCSAVG00000002293-9676.895ENSCING00000000514-10076.895Ciona_intestinalis
ENSCSAVG00000002293-9946.027ENSCANG00000032760CPSF19846.582Colobus_angolensis_palliatus
ENSCSAVG00000002293-9849.765ENSCGRG00001016344Cpsf19948.143Cricetulus_griseus_chok1gshd
ENSCSAVG00000002293-9849.765ENSCGRG00000003118Cpsf19947.698Cricetulus_griseus_crigri
ENSCSAVG00000002293-9949.767ENSCSEG00000013464cpsf19948.405Cynoglossus_semilaevis
ENSCSAVG00000002293-9950.233ENSCVAG00000014059cpsf19946.948Cyprinodon_variegatus
ENSCSAVG00000002293-9852.804ENSDARG00000034178cpsf19949.214Danio_rerio
ENSCSAVG00000002293-5551.220ENSDNOG00000043654CPSF110047.714Dasypus_novemcinctus
ENSCSAVG00000002293-9849.765ENSDORG00000006278Cpsf19948.014Dipodomys_ordii
ENSCSAVG00000002293-9944.700FBgn0024698Cpsf16010039.649Drosophila_melanogaster
ENSCSAVG00000002293-8046.667ENSETEG00000006022CPSF18346.667Echinops_telfairi
ENSCSAVG00000002293-9050.256ENSEBUG00000006844-9852.196Eptatretus_burgeri
ENSCSAVG00000002293-9849.765ENSEASG00005010774CPSF19948.047Equus_asinus_asinus
ENSCSAVG00000002293-9949.302ENSECAG00000022209CPSF19948.047Equus_caballus
ENSCSAVG00000002293-9850.235ENSEEUG00000000471CPSF19947.910Erinaceus_europaeus
ENSCSAVG00000002293-9850.235ENSELUG00000012271cpsf19948.219Esox_lucius
ENSCSAVG00000002293-9849.765ENSFDAG00000016060CPSF19948.591Fukomys_damarensis
ENSCSAVG00000002293-9950.463ENSFHEG00000016801cpsf19949.037Fundulus_heteroclitus
ENSCSAVG00000002293-9949.767ENSGMOG00000000796cpsf19948.697Gadus_morhua
ENSCSAVG00000002293-9650.000ENSGAFG00000018890cpsf19950.000Gambusia_affinis
ENSCSAVG00000002293-9849.765ENSGACG00000008703cpsf19948.354Gasterosteus_aculeatus
ENSCSAVG00000002293-9951.540ENSGAGG00000004276CPSF19849.046Gopherus_agassizii
ENSCSAVG00000002293-9849.765ENSGGOG00000016185CPSF19947.799Gorilla_gorilla
ENSCSAVG00000002293-9338.725ENSGGOG00000040487-9638.725Gorilla_gorilla
ENSCSAVG00000002293-9953.241ENSHBUG00000018900cpsf19949.275Haplochromis_burtoni
ENSCSAVG00000002293-9849.765ENSHGLG00000016139CPSF19948.591Heterocephalus_glaber_female
ENSCSAVG00000002293-9849.765ENSHGLG00100009750CPSF19948.522Heterocephalus_glaber_male
ENSCSAVG00000002293-9953.241ENSHCOG00000018509cpsf19948.618Hippocampus_comes
ENSCSAVG00000002293-9851.402ENSIPUG00000011259cpsf19946.594Ictalurus_punctatus
ENSCSAVG00000002293-9849.765ENSSTOG00000009957CPSF19947.514Ictidomys_tridecemlineatus
ENSCSAVG00000002293-9849.765ENSJJAG00000023002Cpsf19948.660Jaculus_jaculus
ENSCSAVG00000002293-9950.698ENSKMAG00000001940cpsf19952.978Kryptolebias_marmoratus
ENSCSAVG00000002293-9951.163ENSLBEG00000003601cpsf19948.730Labrus_bergylta
ENSCSAVG00000002293-9849.296ENSLACG00000000233CPSF19046.413Latimeria_chalumnae
ENSCSAVG00000002293-9849.302ENSLOCG00000008484cpsf19946.416Lepisosteus_oculatus
ENSCSAVG00000002293-9849.296ENSLAFG00000022601CPSF19948.098Loxodonta_africana
ENSCSAVG00000002293-9849.765ENSMFAG00000037013CPSF19951.929Macaca_fascicularis
ENSCSAVG00000002293-9849.765ENSMMUG00000007380CPSF19851.746Macaca_mulatta
ENSCSAVG00000002293-9849.765ENSMNEG00000043564CPSF19947.656Macaca_nemestrina
ENSCSAVG00000002293-9849.765ENSMLEG00000043010CPSF19951.632Mandrillus_leucophaeus
ENSCSAVG00000002293-9951.163ENSMAMG00000003803cpsf19948.552Mastacembelus_armatus
ENSCSAVG00000002293-9953.241ENSMZEG00005001168cpsf19947.956Maylandia_zebra
ENSCSAVG00000002293-9849.765ENSMAUG00000003601Cpsf19948.352Mesocricetus_auratus
ENSCSAVG00000002293-9849.765ENSMICG00000015767CPSF19948.041Microcebus_murinus
ENSCSAVG00000002293-9849.765ENSMOCG00000022758Cpsf19948.247Microtus_ochrogaster
ENSCSAVG00000002293-9951.628ENSMMOG00000021245cpsf19949.413Mola_mola
ENSCSAVG00000002293-9850.235ENSMODG00000010755CPSF19948.196Monodelphis_domestica
ENSCSAVG00000002293-9950.698ENSMALG00000020545cpsf19948.685Monopterus_albus
ENSCSAVG00000002293-9849.765MGP_CAROLIEiJ_G0019936Cpsf19948.454Mus_caroli
ENSCSAVG00000002293-9849.765ENSMUSG00000034022Cpsf19948.454Mus_musculus
ENSCSAVG00000002293-9849.765MGP_PahariEiJ_G0019946Cpsf19948.454Mus_pahari
ENSCSAVG00000002293-9849.765MGP_SPRETEiJ_G0020839Cpsf19948.454Mus_spretus
ENSCSAVG00000002293-9946.517ENSMPUG00000006419CPSF19348.420Mustela_putorius_furo
ENSCSAVG00000002293-8248.603ENSMLUG00000000667-9948.603Myotis_lucifugus
ENSCSAVG00000002293-9849.765ENSNGAG00000022460Cpsf19948.454Nannospalax_galili
ENSCSAVG00000002293-9953.241ENSNBRG00000000813cpsf19947.467Neolamprologus_brichardi
ENSCSAVG00000002293-9845.540ENSNLEG00000010633-9945.540Nomascus_leucogenys
ENSCSAVG00000002293-8447.429ENSMEUG00000014922CPSF18447.368Notamacropus_eugenii
ENSCSAVG00000002293-6256.842ENSOPRG00000004693-6956.842Ochotona_princeps
ENSCSAVG00000002293-9849.765ENSODEG00000013995CPSF19948.454Octodon_degus
ENSCSAVG00000002293-9953.241ENSONIG00000007676cpsf19949.381Oreochromis_niloticus
ENSCSAVG00000002293-5945.810ENSOANG00000010716CPSF18547.708Ornithorhynchus_anatinus
ENSCSAVG00000002293-9852.582ENSORLG00000013544cpsf19948.509Oryzias_latipes
ENSCSAVG00000002293-9852.582ENSORLG00020021693cpsf19948.306Oryzias_latipes_hni
ENSCSAVG00000002293-9852.582ENSORLG00015009979cpsf19948.509Oryzias_latipes_hsok
ENSCSAVG00000002293-9851.643ENSOMEG00000011849cpsf19948.477Oryzias_melastigma
ENSCSAVG00000002293-9849.765ENSOGAG00000000315CPSF19947.734Otolemur_garnettii
ENSCSAVG00000002293-5154.980ENSOARG00000013594-9554.980Ovis_aries
ENSCSAVG00000002293-9849.765ENSPPAG00000019280CPSF19947.835Pan_paniscus
ENSCSAVG00000002293-9849.765ENSPTRG00000049288-9947.835Pan_troglodytes
ENSCSAVG00000002293-9849.765ENSPTRG00000051253-9947.095Pan_troglodytes
ENSCSAVG00000002293-9339.409ENSPTRG00000052516-9639.409Pan_troglodytes
ENSCSAVG00000002293-9849.765ENSPANG00000015005CPSF19947.656Papio_anubis
ENSCSAVG00000002293-9851.643ENSPKIG00000002582cpsf19948.429Paramormyrops_kingsleyae
ENSCSAVG00000002293-9151.777ENSPMGG00000022177-9951.643Periophthalmus_magnuspinnatus
ENSCSAVG00000002293-9850.235ENSPCIG00000009035CPSF19948.128Phascolarctos_cinereus
ENSCSAVG00000002293-9950.233ENSPFOG00000012870cpsf19948.246Poecilia_formosa
ENSCSAVG00000002293-9949.767ENSPREG00000016307cpsf19947.981Poecilia_reticulata
ENSCSAVG00000002293-9847.887ENSPPYG00000018973CPSF19942.887Pongo_abelii
ENSCSAVG00000002293-9846.948ENSPCAG00000011541CPSF19348.864Procavia_capensis
ENSCSAVG00000002293-9946.249ENSPCOG00000020001CPSF19946.479Propithecus_coquereli
ENSCSAVG00000002293-9550.485ENSPVAG00000006761CPSF19150.852Pteropus_vampyrus
ENSCSAVG00000002293-9953.241ENSPNYG00000004906cpsf19948.569Pundamilia_nyererei
ENSCSAVG00000002293-9946.543ENSPNAG00000024395cpsf19946.717Pygocentrus_nattereri
ENSCSAVG00000002293-9849.765ENSRNOG00000030705Cpsf19948.451Rattus_norvegicus
ENSCSAVG00000002293-9849.765ENSRBIG00000044907CPSF19851.479Rhinopithecus_bieti
ENSCSAVG00000002293-9849.765ENSRROG00000044861CPSF19851.479Rhinopithecus_roxellana
ENSCSAVG00000002293-9849.765ENSSBOG00000027177CPSF19947.972Saimiri_boliviensis_boliviensis
ENSCSAVG00000002293-9850.235ENSSHAG00000006500CPSF19948.128Sarcophilus_harrisii
ENSCSAVG00000002293-9851.643ENSSFOG00015004606cpsf19948.738Scleropages_formosus
ENSCSAVG00000002293-9951.163ENSSMAG00000020547cpsf19947.606Scophthalmus_maximus
ENSCSAVG00000002293-9950.698ENSSDUG00000001100cpsf19949.066Seriola_dumerili
ENSCSAVG00000002293-9950.698ENSSLDG00000003619cpsf19948.860Seriola_lalandi_dorsalis
ENSCSAVG00000002293-8954.167ENSSARG00000003643CPSF19254.167Sorex_araneus
ENSCSAVG00000002293-9848.826ENSSPUG00000014396CPSF19948.716Sphenodon_punctatus
ENSCSAVG00000002293-9951.163ENSSPAG00000005349cpsf19948.213Stegastes_partitus
ENSCSAVG00000002293-9849.765ENSSSCG00000005906CPSF19947.051Sus_scrofa
ENSCSAVG00000002293-9946.154ENSTRUG00000013134cpsf19947.516Takifugu_rubripes
ENSCSAVG00000002293-9948.556ENSTNIG00000014027cpsf19948.571Tetraodon_nigroviridis
ENSCSAVG00000002293-7749.228ENSTBEG00000001756CPSF19149.228Tupaia_belangeri
ENSCSAVG00000002293-9949.302ENSTTRG00000001937CPSF18950.519Tursiops_truncatus
ENSCSAVG00000002293-9849.765ENSUAMG00000006476CPSF19847.838Ursus_americanus
ENSCSAVG00000002293-9845.070ENSVVUG00000005940-9845.070Vulpes_vulpes
ENSCSAVG00000002293-9950.233ENSXCOG00000003608cpsf19948.929Xiphophorus_couchianus
ENSCSAVG00000002293-9950.233ENSXMAG00000005798cpsf19949.134Xiphophorus_maculatus

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