EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000002311 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 12219 bases
Position: chrreftig_167:110901-123119
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000003909	PARP	PF00644.20	8.9e-22	1	1
ENSCSAVP00000003908	PARP	PF00644.20	9.7e-22	1	1
ENSCSAVP00000003907	PARP	PF00644.20	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000003966	-	1148	-	ENSCSAVP00000003908	332 (aa)	-	H2YF10
ENSCSAVT00000003967	-	960	-	ENSCSAVP00000003909	320 (aa)	-	H2YF11
ENSCSAVT00000003965	-	1363	-	ENSCSAVP00000003907	209 (aa)	-	H2YF09

Gene Model

Click here to download ENSCSAVG00000002311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002311	-	97	42.628	ENSG00000138617	PARP16	90	52.273	Homo_sapiens
ENSCSAVG00000002311	-	97	43.131	ENSAPOG00000011225	parp16	92	43.131	Acanthochromis_polyacanthus
ENSCSAVG00000002311	-	97	41.026	ENSAMEG00000002861	PARP16	81	41.026	Ailuropoda_melanoleuca
ENSCSAVG00000002311	-	97	42.492	ENSACIG00000017326	parp16	92	42.492	Amphilophus_citrinellus
ENSCSAVG00000002311	-	97	42.812	ENSAOCG00000007399	parp16	82	42.812	Amphiprion_ocellaris
ENSCSAVG00000002311	-	59	52.846	ENSAOCG00000001382	-	73	38.053	Amphiprion_ocellaris
ENSCSAVG00000002311	-	84	36.296	ENSAOCG00000011431	-	84	36.900	Amphiprion_ocellaris
ENSCSAVG00000002311	-	82	45.896	ENSAPEG00000005885	-	80	45.896	Amphiprion_percula
ENSCSAVG00000002311	-	97	42.812	ENSAPEG00000000410	parp16	92	42.812	Amphiprion_percula
ENSCSAVG00000002311	-	97	43.987	ENSATEG00000015087	parp16	92	43.987	Anabas_testudineus
ENSCSAVG00000002311	-	91	45.263	ENSAPLG00000015958	PARP16	91	41.584	Anas_platyrhynchos
ENSCSAVG00000002311	-	98	37.003	ENSACAG00000004437	-	95	37.003	Anolis_carolinensis
ENSCSAVG00000002311	-	89	42.105	ENSANAG00000026820	PARP16	93	46.939	Aotus_nancymaae
ENSCSAVG00000002311	-	97	43.354	ENSACLG00000006576	parp16	92	43.354	Astatotilapia_calliptera
ENSCSAVG00000002311	-	98	42.722	ENSAMXG00000037093	parp16	93	42.722	Astyanax_mexicanus
ENSCSAVG00000002311	-	98	39.755	ENSBTAG00000012352	PARP16	95	39.755	Bos_taurus
ENSCSAVG00000002311	-	97	41.667	ENSCJAG00000006929	PARP16	93	52.273	Callithrix_jacchus
ENSCSAVG00000002311	-	97	40.705	ENSCAFG00000017142	PARP16	94	40.705	Canis_familiaris
ENSCSAVG00000002311	-	94	41.060	ENSCAFG00020008773	PARP16	98	41.060	Canis_lupus_dingo
ENSCSAVG00000002311	-	97	40.705	ENSCHIG00000011861	PARP16	95	39.755	Capra_hircus
ENSCSAVG00000002311	-	91	46.597	ENSTSYG00000006046	PARP16	89	41.115	Carlito_syrichta
ENSCSAVG00000002311	-	91	45.789	ENSCAPG00000013008	PARP16	90	47.059	Cavia_aperea
ENSCSAVG00000002311	-	97	41.667	ENSCPOG00000025232	PARP16	94	41.667	Cavia_porcellus
ENSCSAVG00000002311	-	97	42.628	ENSCCAG00000032095	PARP16	93	46.939	Cebus_capucinus
ENSCSAVG00000002311	-	97	41.987	ENSCATG00000029968	PARP16	90	52.273	Cercocebus_atys
ENSCSAVG00000002311	-	97	40.705	ENSCLAG00000012092	PARP16	98	39.144	Chinchilla_lanigera
ENSCSAVG00000002311	-	90	42.414	ENSCSAG00000012842	PARP16	96	40.317	Chlorocebus_sabaeus
ENSCSAVG00000002311	-	97	41.987	ENSCPBG00000014669	PARP16	93	40.979	Chrysemys_picta_bellii
ENSCSAVG00000002311	-	100	64.220	ENSCING00000008693	-	100	64.220	Ciona_intestinalis
ENSCSAVG00000002311	-	97	41.987	ENSCANG00000034719	PARP16	90	52.273	Colobus_angolensis_palliatus
ENSCSAVG00000002311	-	97	42.949	ENSCGRG00001011381	Parp16	94	42.949	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002311	-	94	43.564	ENSCGRG00000016969	Parp16	94	42.949	Cricetulus_griseus_crigri
ENSCSAVG00000002311	-	97	43.671	ENSCSEG00000012872	parp16	92	43.671	Cynoglossus_semilaevis
ENSCSAVG00000002311	-	97	36.709	ENSCVAG00000008328	parp16	92	36.709	Cyprinodon_variegatus
ENSCSAVG00000002311	-	97	43.987	ENSDARG00000018593	parp16	92	43.987	Danio_rerio
ENSCSAVG00000002311	-	97	41.346	ENSDNOG00000004137	PARP16	76	41.346	Dasypus_novemcinctus
ENSCSAVG00000002311	-	97	41.667	ENSDORG00000028265	Parp16	94	41.667	Dipodomys_ordii
ENSCSAVG00000002311	-	91	46.316	ENSETEG00000012936	PARP16	88	43.983	Echinops_telfairi
ENSCSAVG00000002311	-	87	43.169	ENSEBUG00000001358	parp16	73	40.000	Eptatretus_burgeri
ENSCSAVG00000002311	-	97	41.987	ENSEASG00005006476	PARP16	94	41.987	Equus_asinus_asinus
ENSCSAVG00000002311	-	97	41.987	ENSECAG00000011251	PARP16	94	41.987	Equus_caballus
ENSCSAVG00000002311	-	97	42.949	ENSELUG00000005526	parp16	92	42.949	Esox_lucius
ENSCSAVG00000002311	-	97	41.987	ENSFCAG00000011463	PARP16	94	46.939	Felis_catus
ENSCSAVG00000002311	-	97	40.064	ENSFALG00000010108	PARP16	97	40.064	Ficedula_albicollis
ENSCSAVG00000002311	-	91	45.263	ENSFDAG00000016096	PARP16	98	42.373	Fukomys_damarensis
ENSCSAVG00000002311	-	97	43.987	ENSFHEG00000009652	parp16	92	43.987	Fundulus_heteroclitus
ENSCSAVG00000002311	-	95	44.262	ENSGMOG00000018820	parp16	96	44.889	Gadus_morhua
ENSCSAVG00000002311	-	97	40.575	ENSGALG00000007365	PARP16	93	40.575	Gallus_gallus
ENSCSAVG00000002311	-	97	43.671	ENSGAFG00000014534	parp16	92	43.671	Gambusia_affinis
ENSCSAVG00000002311	-	97	43.671	ENSGACG00000006315	parp16	92	43.671	Gasterosteus_aculeatus
ENSCSAVG00000002311	-	97	41.667	ENSGAGG00000005709	PARP16	93	40.367	Gopherus_agassizii
ENSCSAVG00000002311	-	97	42.308	ENSGGOG00000022851	PARP16	90	52.273	Gorilla_gorilla
ENSCSAVG00000002311	-	97	43.354	ENSHBUG00000003280	parp16	92	43.354	Haplochromis_burtoni
ENSCSAVG00000002311	-	98	40.367	ENSHGLG00000010657	PARP16	95	40.367	Heterocephalus_glaber_female
ENSCSAVG00000002311	-	98	40.367	ENSHGLG00100018347	PARP16	95	40.367	Heterocephalus_glaber_male
ENSCSAVG00000002311	-	98	44.620	ENSHCOG00000017214	parp16	93	44.620	Hippocampus_comes
ENSCSAVG00000002311	-	94	46.000	ENSIPUG00000020282	parp16	93	41.562	Ictalurus_punctatus
ENSCSAVG00000002311	-	97	42.308	ENSSTOG00000008979	PARP16	96	41.284	Ictidomys_tridecemlineatus
ENSCSAVG00000002311	-	91	45.263	ENSJJAG00000019303	Parp16	97	41.887	Jaculus_jaculus
ENSCSAVG00000002311	-	97	42.857	ENSKMAG00000000762	parp16	92	42.857	Kryptolebias_marmoratus
ENSCSAVG00000002311	-	96	45.513	ENSLBEG00000013968	parp16	92	42.767	Labrus_bergylta
ENSCSAVG00000002311	-	97	43.131	ENSLACG00000016410	PARP16	92	43.131	Latimeria_chalumnae
ENSCSAVG00000002311	-	97	42.628	ENSLOCG00000013778	parp16	89	42.812	Lepisosteus_oculatus
ENSCSAVG00000002311	-	97	42.308	ENSLAFG00000014938	PARP16	66	42.308	Loxodonta_africana
ENSCSAVG00000002311	-	97	41.987	ENSMFAG00000036137	PARP16	92	42.574	Macaca_fascicularis
ENSCSAVG00000002311	-	97	41.987	ENSMMUG00000005749	PARP16	90	52.273	Macaca_mulatta
ENSCSAVG00000002311	-	97	41.987	ENSMNEG00000028481	PARP16	90	52.273	Macaca_nemestrina
ENSCSAVG00000002311	-	94	43.234	ENSMLEG00000035171	PARP16	98	43.234	Mandrillus_leucophaeus
ENSCSAVG00000002311	-	97	43.671	ENSMAMG00000001037	parp16	92	43.671	Mastacembelus_armatus
ENSCSAVG00000002311	-	97	43.354	ENSMZEG00005004556	parp16	92	43.354	Maylandia_zebra
ENSCSAVG00000002311	-	91	45.550	ENSMGAG00000009579	PARP16	90	43.373	Meleagris_gallopavo
ENSCSAVG00000002311	-	97	42.949	ENSMAUG00000014432	Parp16	94	42.949	Mesocricetus_auratus
ENSCSAVG00000002311	-	97	42.308	ENSMICG00000004993	PARP16	90	52.273	Microcebus_murinus
ENSCSAVG00000002311	-	97	42.308	ENSMOCG00000014635	Parp16	94	42.308	Microtus_ochrogaster
ENSCSAVG00000002311	-	97	44.762	ENSMMOG00000012735	parp16	92	44.762	Mola_mola
ENSCSAVG00000002311	-	99	42.453	ENSMODG00000010285	PARP16	96	40.841	Monodelphis_domestica
ENSCSAVG00000002311	-	97	43.038	ENSMALG00000008263	parp16	92	43.038	Monopterus_albus
ENSCSAVG00000002311	-	98	43.631	MGP_CAROLIEiJ_G0032354	Parp16	96	41.945	Mus_caroli
ENSCSAVG00000002311	-	97	43.910	ENSMUSG00000032392	Parp16	96	42.358	Mus_musculus
ENSCSAVG00000002311	-	97	43.590	MGP_PahariEiJ_G0015219	Parp16	94	43.590	Mus_pahari
ENSCSAVG00000002311	-	97	43.910	MGP_SPRETEiJ_G0033493	Parp16	94	43.910	Mus_spretus
ENSCSAVG00000002311	-	97	40.705	ENSMPUG00000000505	PARP16	94	40.705	Mustela_putorius_furo
ENSCSAVG00000002311	-	97	41.987	ENSMLUG00000008817	-	92	40.367	Myotis_lucifugus
ENSCSAVG00000002311	-	98	38.838	ENSMLUG00000027763	-	87	38.838	Myotis_lucifugus
ENSCSAVG00000002311	-	97	43.269	ENSNGAG00000004884	Parp16	94	43.269	Nannospalax_galili
ENSCSAVG00000002311	-	97	43.354	ENSNBRG00000002822	parp16	92	43.354	Neolamprologus_brichardi
ENSCSAVG00000002311	-	89	38.710	ENSNLEG00000012643	-	90	52.273	Nomascus_leucogenys
ENSCSAVG00000002311	-	99	43.396	ENSMEUG00000001881	PARP16	96	41.742	Notamacropus_eugenii
ENSCSAVG00000002311	-	92	44.330	ENSOPRG00000010193	PARP16	99	44.444	Ochotona_princeps
ENSCSAVG00000002311	-	97	42.628	ENSODEG00000016601	PARP16	94	42.628	Octodon_degus
ENSCSAVG00000002311	-	97	43.354	ENSONIG00000008404	parp16	92	43.354	Oreochromis_niloticus
ENSCSAVG00000002311	-	91	46.842	ENSOANG00000008180	PARP16	96	43.561	Ornithorhynchus_anatinus
ENSCSAVG00000002311	-	90	43.253	ENSOCUG00000007306	PARP16	94	42.308	Oryctolagus_cuniculus
ENSCSAVG00000002311	-	97	44.089	ENSORLG00000004989	parp16	92	44.089	Oryzias_latipes
ENSCSAVG00000002311	-	97	43.770	ENSORLG00020012000	parp16	92	43.770	Oryzias_latipes_hni
ENSCSAVG00000002311	-	97	44.089	ENSORLG00015005215	parp16	92	44.089	Oryzias_latipes_hsok
ENSCSAVG00000002311	-	97	44.728	ENSOMEG00000014528	parp16	92	44.728	Oryzias_melastigma
ENSCSAVG00000002311	-	97	41.486	ENSOGAG00000013641	PARP16	87	39.941	Otolemur_garnettii
ENSCSAVG00000002311	-	97	40.705	ENSOARG00000017858	PARP16	93	40.705	Ovis_aries
ENSCSAVG00000002311	-	97	42.628	ENSPPAG00000030232	PARP16	90	52.273	Pan_paniscus
ENSCSAVG00000002311	-	97	41.987	ENSPPRG00000022890	PARP16	93	46.939	Panthera_pardus
ENSCSAVG00000002311	-	97	41.987	ENSPTIG00000004433	PARP16	96	46.939	Panthera_tigris_altaica
ENSCSAVG00000002311	-	97	41.987	ENSPTRG00000007178	PARP16	90	52.273	Pan_troglodytes
ENSCSAVG00000002311	-	97	42.628	ENSPANG00000016725	PARP16	90	52.273	Papio_anubis
ENSCSAVG00000002311	-	97	42.857	ENSPKIG00000015906	parp16	92	42.857	Paramormyrops_kingsleyae
ENSCSAVG00000002311	-	97	41.987	ENSPSIG00000013215	PARP16	92	41.987	Pelodiscus_sinensis
ENSCSAVG00000002311	-	98	43.312	ENSPMGG00000006621	parp16	93	43.312	Periophthalmus_magnuspinnatus
ENSCSAVG00000002311	-	97	42.628	ENSPEMG00000022071	Parp16	94	42.628	Peromyscus_maniculatus_bairdii
ENSCSAVG00000002311	-	98	39.365	ENSPMAG00000000919	parp16	94	39.365	Petromyzon_marinus
ENSCSAVG00000002311	-	99	42.767	ENSPCIG00000024110	PARP16	95	41.141	Phascolarctos_cinereus
ENSCSAVG00000002311	-	97	43.987	ENSPFOG00000003537	parp16	92	43.987	Poecilia_formosa
ENSCSAVG00000002311	-	97	43.987	ENSPLAG00000009118	parp16	92	43.987	Poecilia_latipinna
ENSCSAVG00000002311	-	94	46.939	ENSPMEG00000016623	parp16	92	43.671	Poecilia_mexicana
ENSCSAVG00000002311	-	97	43.987	ENSPREG00000015760	parp16	92	43.987	Poecilia_reticulata
ENSCSAVG00000002311	-	97	42.308	ENSPPYG00000006565	PARP16	94	42.308	Pongo_abelii
ENSCSAVG00000002311	-	97	41.667	ENSPCAG00000003599	PARP16	94	41.667	Procavia_capensis
ENSCSAVG00000002311	-	97	42.949	ENSPCOG00000019309	PARP16	90	52.273	Propithecus_coquereli
ENSCSAVG00000002311	-	66	43.396	ENSPVAG00000004875	PARP16	67	42.857	Pteropus_vampyrus
ENSCSAVG00000002311	-	97	43.354	ENSPNYG00000021598	parp16	92	43.354	Pundamilia_nyererei
ENSCSAVG00000002311	-	98	42.722	ENSPNAG00000016973	parp16	84	42.722	Pygocentrus_nattereri
ENSCSAVG00000002311	-	97	42.628	ENSRNOG00000029127	Parp16	71	42.628	Rattus_norvegicus
ENSCSAVG00000002311	-	98	41.284	ENSRBIG00000040761	PARP16	93	51.020	Rhinopithecus_bieti
ENSCSAVG00000002311	-	97	42.628	ENSRROG00000043358	PARP16	93	51.020	Rhinopithecus_roxellana
ENSCSAVG00000002311	-	94	36.150	ENSSBOG00000032698	PARP16	93	46.939	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002311	-	99	42.453	ENSSHAG00000012032	PARP16	96	40.841	Sarcophilus_harrisii
ENSCSAVG00000002311	-	97	44.728	ENSSFOG00015015435	parp16	91	44.051	Scleropages_formosus
ENSCSAVG00000002311	-	97	43.354	ENSSMAG00000010948	parp16	79	43.354	Scophthalmus_maximus
ENSCSAVG00000002311	-	97	43.949	ENSSDUG00000021721	parp16	92	43.949	Seriola_dumerili
ENSCSAVG00000002311	-	97	43.987	ENSSLDG00000007648	parp16	92	43.987	Seriola_lalandi_dorsalis
ENSCSAVG00000002311	-	97	41.401	ENSSPUG00000009787	PARP16	91	41.401	Sphenodon_punctatus
ENSCSAVG00000002311	-	97	43.671	ENSSPAG00000001323	parp16	90	43.671	Stegastes_partitus
ENSCSAVG00000002311	-	97	41.346	ENSSSCG00000004929	PARP16	94	41.346	Sus_scrofa
ENSCSAVG00000002311	-	91	45.550	ENSTGUG00000009103	PARP16	98	39.474	Taeniopygia_guttata
ENSCSAVG00000002311	-	97	44.089	ENSTRUG00000006022	parp16	93	43.119	Takifugu_rubripes
ENSCSAVG00000002311	-	97	43.987	ENSTNIG00000013709	parp16	92	43.987	Tetraodon_nigroviridis
ENSCSAVG00000002311	-	80	46.429	ENSTBEG00000010101	PARP16	97	41.132	Tupaia_belangeri
ENSCSAVG00000002311	-	91	44.737	ENSTTRG00000005004	PARP16	88	42.739	Tursiops_truncatus
ENSCSAVG00000002311	-	97	39.744	ENSUAMG00000016988	PARP16	95	38.226	Ursus_americanus
ENSCSAVG00000002311	-	94	40.264	ENSUMAG00000012504	PARP16	98	40.264	Ursus_maritimus
ENSCSAVG00000002311	-	78	43.210	ENSVPAG00000008504	PARP16	55	46.053	Vicugna_pacos
ENSCSAVG00000002311	-	96	41.042	ENSVVUG00000014214	PARP16	98	41.042	Vulpes_vulpes
ENSCSAVG00000002311	-	97	43.849	ENSXETG00000006648	parp16	84	43.849	Xenopus_tropicalis
ENSCSAVG00000002311	-	94	46.040	ENSXCOG00000016475	parp16	93	42.771	Xiphophorus_couchianus
ENSCSAVG00000002311	-	97	43.671	ENSXMAG00000007454	parp16	92	43.671	Xiphophorus_maculatus