EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000002414 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 40263 bases
Position: chrreftig_12:1091055-1131317
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004094	Not1	PF04054.15	3.1e-146	1	1
ENSCSAVP00000004093	Not1	PF04054.15	3.5e-146	1	1
ENSCSAVP00000004095	Not1	PF04054.15	1.2e-133	1	1
ENSCSAVP00000004096	Not1	PF04054.15	1.9e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004158	-	6529	-	ENSCSAVP00000004096	2150 (aa)	-	H2YFJ8
ENSCSAVT00000004159	-	4858	-	ENSCSAVP00000004097	1603 (aa)	-	H2YFJ9
ENSCSAVT00000004156	-	6339	-	ENSCSAVP00000004094	2094 (aa)	-	H2YFJ6
ENSCSAVT00000004157	-	5334	-	ENSCSAVP00000004095	1731 (aa)	-	H2YFJ7
ENSCSAVT00000004155	-	6286	-	ENSCSAVP00000004093	2055 (aa)	-	H2YFJ5

Gene Model

Click here to download ENSCSAVG00000002414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002414's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002414	-	95	78.808	ENSG00000125107	CNOT1	96	87.500	Homo_sapiens
ENSCSAVG00000002414	-	97	77.019	ENSAPOG00000005042	cnot1	89	77.019	Acanthochromis_polyacanthus
ENSCSAVG00000002414	-	95	78.808	ENSAMEG00000017298	CNOT1	89	63.219	Ailuropoda_melanoleuca
ENSCSAVG00000002414	-	95	79.470	ENSACIG00000016003	cnot1	99	62.261	Amphilophus_citrinellus
ENSCSAVG00000002414	-	95	79.470	ENSAPEG00000022342	cnot1	89	62.559	Amphiprion_percula
ENSCSAVG00000002414	-	97	77.019	ENSATEG00000012892	cnot1	89	77.019	Anabas_testudineus
ENSCSAVG00000002414	-	99	62.826	ENSAPLG00000007162	CNOT1	89	63.020	Anas_platyrhynchos
ENSCSAVG00000002414	-	99	58.928	ENSACAG00000001602	CNOT1	98	58.864	Anolis_carolinensis
ENSCSAVG00000002414	-	95	78.808	ENSANAG00000038198	CNOT1	93	58.861	Aotus_nancymaae
ENSCSAVG00000002414	-	97	77.019	ENSACLG00000014234	cnot1	89	77.019	Astatotilapia_calliptera
ENSCSAVG00000002414	-	99	62.128	ENSAMXG00000013170	cnot1	89	62.623	Astyanax_mexicanus
ENSCSAVG00000002414	-	94	81.984	ENSBTAG00000020782	CNOT1	89	82.353	Bos_taurus
ENSCSAVG00000002414	-	99	36.659	WBGene00002845	let-711	93	54.202	Caenorhabditis_elegans
ENSCSAVG00000002414	-	95	78.808	ENSCJAG00000011318	CNOT1	99	78.269	Callithrix_jacchus
ENSCSAVG00000002414	-	95	78.808	ENSCAFG00000008426	CNOT1	89	62.873	Canis_familiaris
ENSCSAVG00000002414	-	94	80.427	ENSCAFG00020010156	CNOT1	90	80.427	Canis_lupus_dingo
ENSCSAVG00000002414	-	95	78.808	ENSCHIG00000010452	CNOT1	89	63.020	Capra_hircus
ENSCSAVG00000002414	-	95	78.808	ENSTSYG00000006888	CNOT1	89	63.020	Carlito_syrichta
ENSCSAVG00000002414	-	95	78.808	ENSCPOG00000013026	CNOT1	91	63.188	Cavia_porcellus
ENSCSAVG00000002414	-	95	78.808	ENSCCAG00000026333	CNOT1	89	61.524	Cebus_capucinus
ENSCSAVG00000002414	-	95	78.808	ENSCATG00000032625	CNOT1	89	62.973	Cercocebus_atys
ENSCSAVG00000002414	-	95	78.808	ENSCLAG00000006289	CNOT1	89	63.067	Chinchilla_lanigera
ENSCSAVG00000002414	-	95	78.808	ENSCSAG00000004731	CNOT1	89	62.973	Chlorocebus_sabaeus
ENSCSAVG00000002414	-	78	93.548	ENSCHOG00000009712	CNOT1	73	93.548	Choloepus_hoffmanni
ENSCSAVG00000002414	-	94	81.984	ENSCPBG00000026222	CNOT1	89	81.363	Chrysemys_picta_bellii
ENSCSAVG00000002414	-	83	93.464	ENSCING00000009149	-	85	88.698	Ciona_intestinalis
ENSCSAVG00000002414	-	95	78.808	ENSCANG00000040534	CNOT1	89	62.279	Colobus_angolensis_palliatus
ENSCSAVG00000002414	-	95	78.808	ENSCGRG00001016365	Cnot1	89	63.067	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002414	-	95	78.808	ENSCGRG00000001714	Cnot1	89	63.067	Cricetulus_griseus_crigri
ENSCSAVG00000002414	-	97	76.891	ENSCVAG00000018930	cnot1	89	76.741	Cyprinodon_variegatus
ENSCSAVG00000002414	-	95	79.470	ENSDARG00000004174	cnot1	89	62.821	Danio_rerio
ENSCSAVG00000002414	-	95	78.808	ENSDNOG00000013250	CNOT1	89	61.711	Dasypus_novemcinctus
ENSCSAVG00000002414	-	96	53.297	FBgn0085436	Not1	95	48.594	Drosophila_melanogaster
ENSCSAVG00000002414	-	83	78.153	ENSETEG00000012806	CNOT1	75	78.153	Echinops_telfairi
ENSCSAVG00000002414	-	79	78.174	ENSEBUG00000011534	cnot1	85	78.174	Eptatretus_burgeri
ENSCSAVG00000002414	-	93	81.984	ENSEASG00005005819	CNOT1	90	80.427	Equus_asinus_asinus
ENSCSAVG00000002414	-	97	78.273	ENSECAG00000009889	CNOT1	89	78.273	Equus_caballus
ENSCSAVG00000002414	-	89	72.268	ENSEEUG00000006015	CNOT1	79	72.268	Erinaceus_europaeus
ENSCSAVG00000002414	-	95	78.808	ENSELUG00000014085	cnot1	89	61.832	Esox_lucius
ENSCSAVG00000002414	-	95	78.808	ENSFCAG00000025155	CNOT1	91	63.020	Felis_catus
ENSCSAVG00000002414	-	99	63.241	ENSFALG00000007285	CNOT1	89	63.109	Ficedula_albicollis
ENSCSAVG00000002414	-	95	78.808	ENSFDAG00000013399	CNOT1	89	63.067	Fukomys_damarensis
ENSCSAVG00000002414	-	99	62.315	ENSFHEG00000020574	cnot1	89	62.349	Fundulus_heteroclitus
ENSCSAVG00000002414	-	83	78.808	ENSGMOG00000012864	cnot1	100	58.375	Gadus_morhua
ENSCSAVG00000002414	-	99	63.170	ENSGALG00000002301	CNOT1	89	63.109	Gallus_gallus
ENSCSAVG00000002414	-	99	62.331	ENSGAFG00000015005	cnot1	89	62.219	Gambusia_affinis
ENSCSAVG00000002414	-	83	79.470	ENSGACG00000002606	cnot1	99	75.424	Gasterosteus_aculeatus
ENSCSAVG00000002414	-	95	68.052	ENSGAGG00000022646	CNOT1	89	68.289	Gopherus_agassizii
ENSCSAVG00000002414	-	95	78.808	ENSGGOG00000009547	CNOT1	89	62.973	Gorilla_gorilla
ENSCSAVG00000002414	-	97	77.019	ENSHBUG00000001729	cnot1	89	77.019	Haplochromis_burtoni
ENSCSAVG00000002414	-	95	78.808	ENSHGLG00000014322	CNOT1	89	63.020	Heterocephalus_glaber_female
ENSCSAVG00000002414	-	96	70.857	ENSHCOG00000006501	cnot1	89	62.220	Hippocampus_comes
ENSCSAVG00000002414	-	95	78.808	ENSIPUG00000011915	cnot1	89	62.084	Ictalurus_punctatus
ENSCSAVG00000002414	-	95	78.808	ENSSTOG00000005490	CNOT1	89	63.114	Ictidomys_tridecemlineatus
ENSCSAVG00000002414	-	95	78.808	ENSJJAG00000000633	Cnot1	89	62.693	Jaculus_jaculus
ENSCSAVG00000002414	-	95	79.470	ENSKMAG00000006149	cnot1	89	62.552	Kryptolebias_marmoratus
ENSCSAVG00000002414	-	94	80.567	ENSLBEG00000004740	cnot1	90	79.004	Labrus_bergylta
ENSCSAVG00000002414	-	98	65.054	ENSLACG00000010869	CNOT1	89	63.397	Latimeria_chalumnae
ENSCSAVG00000002414	-	95	79.470	ENSLOCG00000006324	cnot1	89	63.160	Lepisosteus_oculatus
ENSCSAVG00000002414	-	95	78.808	ENSLAFG00000000098	CNOT1	89	62.915	Loxodonta_africana
ENSCSAVG00000002414	-	95	78.808	ENSMFAG00000035888	CNOT1	89	63.173	Macaca_fascicularis
ENSCSAVG00000002414	-	95	78.808	ENSMMUG00000014625	CNOT1	94	84.727	Macaca_mulatta
ENSCSAVG00000002414	-	95	78.808	ENSMNEG00000031820	CNOT1	99	62.973	Macaca_nemestrina
ENSCSAVG00000002414	-	95	78.808	ENSMLEG00000040933	CNOT1	89	61.571	Mandrillus_leucophaeus
ENSCSAVG00000002414	-	95	77.483	ENSMAMG00000016524	cnot1	89	61.780	Mastacembelus_armatus
ENSCSAVG00000002414	-	97	77.019	ENSMZEG00005016210	cnot1	90	77.019	Maylandia_zebra
ENSCSAVG00000002414	-	95	78.808	ENSMGAG00000001908	CNOT1	89	63.150	Meleagris_gallopavo
ENSCSAVG00000002414	-	95	78.808	ENSMICG00000007071	CNOT1	89	62.961	Microcebus_murinus
ENSCSAVG00000002414	-	95	78.808	ENSMOCG00000017969	Cnot1	90	62.973	Microtus_ochrogaster
ENSCSAVG00000002414	-	97	75.200	ENSMMOG00000019134	cnot1	91	75.200	Mola_mola
ENSCSAVG00000002414	-	95	78.146	ENSMODG00000014199	CNOT1	89	62.710	Monodelphis_domestica
ENSCSAVG00000002414	-	95	78.808	ENSMALG00000008645	cnot1	89	62.014	Monopterus_albus
ENSCSAVG00000002414	-	99	74.385	MGP_CAROLIEiJ_G0031430	Cnot1	83	74.385	Mus_caroli
ENSCSAVG00000002414	-	95	78.808	ENSMUSG00000036550	Cnot1	89	63.173	Mus_musculus
ENSCSAVG00000002414	-	95	78.808	MGP_PahariEiJ_G0023028	Cnot1	89	62.973	Mus_pahari
ENSCSAVG00000002414	-	95	78.808	MGP_SPRETEiJ_G0032549	Cnot1	89	62.973	Mus_spretus
ENSCSAVG00000002414	-	95	78.808	ENSMPUG00000004830	CNOT1	89	63.020	Mustela_putorius_furo
ENSCSAVG00000002414	-	95	78.808	ENSMLUG00000003728	CNOT1	89	62.880	Myotis_lucifugus
ENSCSAVG00000002414	-	95	79.470	ENSNGAG00000018628	Cnot1	89	63.020	Nannospalax_galili
ENSCSAVG00000002414	-	93	77.019	ENSNBRG00000019358	cnot1	89	77.019	Neolamprologus_brichardi
ENSCSAVG00000002414	-	95	78.808	ENSNLEG00000003566	CNOT1	89	63.101	Nomascus_leucogenys
ENSCSAVG00000002414	-	88	79.310	ENSMEUG00000006145	CNOT1	78	78.049	Notamacropus_eugenii
ENSCSAVG00000002414	-	91	83.410	ENSOPRG00000005604	CNOT1	79	83.410	Ochotona_princeps
ENSCSAVG00000002414	-	95	78.808	ENSODEG00000016337	CNOT1	89	63.020	Octodon_degus
ENSCSAVG00000002414	-	95	78.808	ENSONIG00000007358	cnot1	89	62.320	Oreochromis_niloticus
ENSCSAVG00000002414	-	95	78.808	ENSOANG00000012109	CNOT1	99	62.973	Ornithorhynchus_anatinus
ENSCSAVG00000002414	-	95	78.808	ENSOCUG00000006911	CNOT1	89	63.160	Oryctolagus_cuniculus
ENSCSAVG00000002414	-	95	79.470	ENSORLG00000013734	cnot1	89	62.745	Oryzias_latipes
ENSCSAVG00000002414	-	93	79.470	ENSORLG00020017012	cnot1	92	58.607	Oryzias_latipes_hni
ENSCSAVG00000002414	-	93	79.470	ENSORLG00015007091	cnot1	92	58.489	Oryzias_latipes_hsok
ENSCSAVG00000002414	-	93	79.470	ENSOMEG00000015124	cnot1	92	58.649	Oryzias_melastigma
ENSCSAVG00000002414	-	99	63.335	ENSOGAG00000000543	CNOT1	89	63.160	Otolemur_garnettii
ENSCSAVG00000002414	-	95	78.808	ENSOARG00000001567	CNOT1	89	63.020	Ovis_aries
ENSCSAVG00000002414	-	95	78.808	ENSPPAG00000022013	CNOT1	89	62.973	Pan_paniscus
ENSCSAVG00000002414	-	95	78.808	ENSPPRG00000004867	CNOT1	89	63.020	Panthera_pardus
ENSCSAVG00000002414	-	95	78.808	ENSPTIG00000012589	CNOT1	89	63.020	Panthera_tigris_altaica
ENSCSAVG00000002414	-	95	78.808	ENSPTRG00000008183	CNOT1	89	62.768	Pan_troglodytes
ENSCSAVG00000002414	-	95	78.808	ENSPANG00000020901	CNOT1	89	61.531	Papio_anubis
ENSCSAVG00000002414	-	97	76.602	ENSPKIG00000002914	CNOT1	89	76.602	Paramormyrops_kingsleyae
ENSCSAVG00000002414	-	95	79.470	ENSPKIG00000023538	CNOT1	89	63.025	Paramormyrops_kingsleyae
ENSCSAVG00000002414	-	99	63.101	ENSPSIG00000005499	CNOT1	89	63.015	Pelodiscus_sinensis
ENSCSAVG00000002414	-	94	80.921	ENSPMAG00000009381	cnot1	89	63.079	Petromyzon_marinus
ENSCSAVG00000002414	-	94	81.781	ENSPCIG00000007343	CNOT1	89	82.150	Phascolarctos_cinereus
ENSCSAVG00000002414	-	95	79.470	ENSPFOG00000003497	cnot1	89	62.389	Poecilia_formosa
ENSCSAVG00000002414	-	94	80.162	ENSPLAG00000014018	cnot1	89	79.559	Poecilia_latipinna
ENSCSAVG00000002414	-	94	80.162	ENSPMEG00000005868	cnot1	90	79.559	Poecilia_mexicana
ENSCSAVG00000002414	-	94	79.559	ENSPREG00000018793	cnot1	89	79.559	Poecilia_reticulata
ENSCSAVG00000002414	-	95	78.808	ENSPPYG00000007410	CNOT1	89	62.973	Pongo_abelii
ENSCSAVG00000002414	-	85	72.362	ENSPCAG00000003241	CNOT1	77	73.039	Procavia_capensis
ENSCSAVG00000002414	-	95	78.808	ENSPCOG00000027139	CNOT1	89	62.756	Propithecus_coquereli
ENSCSAVG00000002414	-	95	78.808	ENSPVAG00000004243	CNOT1	89	60.778	Pteropus_vampyrus
ENSCSAVG00000002414	-	97	77.019	ENSPNYG00000012919	cnot1	89	77.019	Pundamilia_nyererei
ENSCSAVG00000002414	-	99	62.447	ENSPNAG00000000246	cnot1	89	62.653	Pygocentrus_nattereri
ENSCSAVG00000002414	-	95	78.808	ENSRNOG00000012271	Cnot1	89	62.973	Rattus_norvegicus
ENSCSAVG00000002414	-	95	78.808	ENSRBIG00000044598	CNOT1	90	62.899	Rhinopithecus_bieti
ENSCSAVG00000002414	-	95	78.808	ENSRROG00000000906	CNOT1	89	62.973	Rhinopithecus_roxellana
ENSCSAVG00000002414	-	70	32.547	YCR093W	CDC39	65	32.861	Saccharomyces_cerevisiae
ENSCSAVG00000002414	-	90	78.808	ENSSBOG00000029155	CNOT1	89	59.768	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002414	-	95	78.146	ENSSHAG00000012187	CNOT1	89	62.728	Sarcophilus_harrisii
ENSCSAVG00000002414	-	93	79.470	ENSSFOG00015017614	cnot1	92	58.348	Scleropages_formosus
ENSCSAVG00000002414	-	95	79.470	ENSSMAG00000013844	cnot1	89	77.019	Scophthalmus_maximus
ENSCSAVG00000002414	-	97	77.159	ENSSDUG00000021491	cnot1	89	77.159	Seriola_dumerili
ENSCSAVG00000002414	-	95	79.470	ENSSLDG00000014816	cnot1	89	77.159	Seriola_lalandi_dorsalis
ENSCSAVG00000002414	-	86	79.772	ENSSARG00000000762	CNOT1	81	79.772	Sorex_araneus
ENSCSAVG00000002414	-	99	62.657	ENSSPAG00000018802	cnot1	89	62.377	Stegastes_partitus
ENSCSAVG00000002414	-	94	81.984	ENSSSCG00000002799	CNOT1	90	80.427	Sus_scrofa
ENSCSAVG00000002414	-	99	63.153	ENSTGUG00000005919	CNOT1	89	63.020	Taeniopygia_guttata
ENSCSAVG00000002414	-	99	62.853	ENSTNIG00000018706	cnot1	89	62.849	Tetraodon_nigroviridis
ENSCSAVG00000002414	-	91	78.689	ENSTBEG00000000720	CNOT1	74	76.761	Tupaia_belangeri
ENSCSAVG00000002414	-	89	75.497	ENSTTRG00000008460	CNOT1	84	65.489	Tursiops_truncatus
ENSCSAVG00000002414	-	95	78.808	ENSUAMG00000009251	CNOT1	89	63.020	Ursus_americanus
ENSCSAVG00000002414	-	95	78.808	ENSUMAG00000021291	CNOT1	89	63.020	Ursus_maritimus
ENSCSAVG00000002414	-	96	71.398	ENSVPAG00000008846	CNOT1	86	71.398	Vicugna_pacos
ENSCSAVG00000002414	-	94	80.427	ENSVVUG00000024037	CNOT1	90	80.427	Vulpes_vulpes
ENSCSAVG00000002414	-	94	78.808	ENSXETG00000015900	cnot1	89	59.691	Xenopus_tropicalis
ENSCSAVG00000002414	-	99	62.389	ENSXCOG00000013552	cnot1	89	62.277	Xiphophorus_couchianus
ENSCSAVG00000002414	-	99	62.389	ENSXMAG00000006031	cnot1	89	62.277	Xiphophorus_maculatus