EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000002455 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 13102 bases
Position: chrreftig_7:1056506-1069607
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004173	Surp	PF01805.20	4.9e-17	1	1
ENSCSAVP00000004170	Surp	PF01805.20	4.2e-16	1	1
ENSCSAVP00000004167	Surp	PF01805.20	4.5e-16	1	1
ENSCSAVP00000004171	Surp	PF01805.20	4.6e-16	1	1
ENSCSAVP00000004172	Surp	PF01805.20	4.7e-16	1	1
ENSCSAVP00000004172	G-patch	PF01585.23	6.9e-10	1	1
ENSCSAVP00000004169	G-patch	PF01585.23	7.1e-10	1	1
ENSCSAVP00000004167	G-patch	PF01585.23	7.2e-10	1	1
ENSCSAVP00000004170	G-patch	PF01585.23	7.2e-10	1	1
ENSCSAVP00000004171	G-patch	PF01585.23	7.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004233	-	2706	-	ENSCSAVP00000004170	869 (aa)	-	H2YFS2
ENSCSAVT00000004232	-	2718	-	ENSCSAVP00000004169	846 (aa)	-	H2YFS1
ENSCSAVT00000004231	-	1584	-	ENSCSAVP00000004168	362 (aa)	-	H2YFS0
ENSCSAVT00000004230	-	2670	-	ENSCSAVP00000004167	848 (aa)	-	H2YFR9
ENSCSAVT00000004236	-	610	-	ENSCSAVP00000004173	168 (aa)	-	H2YFS5
ENSCSAVT00000004235	-	2577	-	ENSCSAVP00000004172	831 (aa)	-	H2YFS4
ENSCSAVT00000004234	-	2715	-	ENSCSAVP00000004171	873 (aa)	-	H2YFS3

Gene Model

Click here to download ENSCSAVG00000002455's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002455's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002455	-	51	66.346	ENSG00000085872	CHERP	51	76.667	Homo_sapiens
ENSCSAVG00000002455	-	50	73.958	ENSACIG00000019242	cherp	51	61.600	Amphilophus_citrinellus
ENSCSAVG00000002455	-	54	77.778	ENSAOCG00000017846	cherp	60	45.178	Amphiprion_ocellaris
ENSCSAVG00000002455	-	54	77.778	ENSAPEG00000021128	cherp	50	61.600	Amphiprion_percula
ENSCSAVG00000002455	-	50	77.778	ENSATEG00000006341	cherp	51	49.718	Anabas_testudineus
ENSCSAVG00000002455	-	51	73.958	ENSACLG00000020053	cherp	60	44.670	Astatotilapia_calliptera
ENSCSAVG00000002455	-	50	55.072	WBGene00006442	tag-65	51	55.072	Caenorhabditis_elegans
ENSCSAVG00000002455	-	60	65.625	ENSCAFG00020009941	CHERP	59	76.712	Canis_lupus_dingo
ENSCSAVG00000002455	-	77	48.632	ENSCHIG00000013765	CHERP	62	72.152	Capra_hircus
ENSCSAVG00000002455	-	51	66.346	ENSCATG00000031409	CHERP	51	76.667	Cercocebus_atys
ENSCSAVG00000002455	-	51	66.346	ENSCSAG00000005740	CHERP	50	76.667	Chlorocebus_sabaeus
ENSCSAVG00000002455	-	99	59.597	ENSCING00000004814	-	95	63.882	Ciona_intestinalis
ENSCSAVG00000002455	-	51	66.346	ENSCANG00000032053	CHERP	50	76.667	Colobus_angolensis_palliatus
ENSCSAVG00000002455	-	53	64.000	ENSDARG00000021812	cherp	96	41.176	Danio_rerio
ENSCSAVG00000002455	-	70	56.000	FBgn0261872	scaf6	90	36.123	Drosophila_melanogaster
ENSCSAVG00000002455	-	51	73.958	ENSFHEG00000009720	cherp	51	49.171	Fundulus_heteroclitus
ENSCSAVG00000002455	-	51	73.958	ENSHBUG00000007405	cherp	50	77.778	Haplochromis_burtoni
ENSCSAVG00000002455	-	51	66.346	ENSHGLG00000002993	CHERP	52	76.667	Heterocephalus_glaber_female
ENSCSAVG00000002455	-	57	45.699	ENSHGLG00100010390	CHERP	54	73.684	Heterocephalus_glaber_male
ENSCSAVG00000002455	-	65	57.692	ENSHCOG00000007691	cherp	54	76.667	Hippocampus_comes
ENSCSAVG00000002455	-	55	72.917	ENSIPUG00000025008	cherp	64	49.458	Ictalurus_punctatus
ENSCSAVG00000002455	-	50	77.778	ENSLBEG00000007586	cherp	52	77.778	Labrus_bergylta
ENSCSAVG00000002455	-	55	57.241	ENSLACG00000018221	CHERP	55	56.579	Latimeria_chalumnae
ENSCSAVG00000002455	-	51	66.346	ENSMFAG00000033267	CHERP	51	76.667	Macaca_fascicularis
ENSCSAVG00000002455	-	51	66.346	ENSMMUG00000012958	CHERP	52	76.667	Macaca_mulatta
ENSCSAVG00000002455	-	51	66.346	ENSMNEG00000004125	CHERP	51	76.667	Macaca_nemestrina
ENSCSAVG00000002455	-	51	66.346	ENSMLEG00000044337	CHERP	58	76.667	Mandrillus_leucophaeus
ENSCSAVG00000002455	-	51	73.958	ENSMZEG00005018014	cherp	54	62.097	Maylandia_zebra
ENSCSAVG00000002455	-	51	66.346	ENSMAUG00000015856	Cherp	51	76.667	Mesocricetus_auratus
ENSCSAVG00000002455	-	50	77.778	ENSMMOG00000008525	cherp	52	54.487	Mola_mola
ENSCSAVG00000002455	-	51	65.385	ENSMODG00000014938	CHERP	79	31.765	Monodelphis_domestica
ENSCSAVG00000002455	-	50	77.778	ENSMALG00000020688	cherp	53	49.451	Monopterus_albus
ENSCSAVG00000002455	-	51	66.346	ENSNGAG00000023323	Cherp	50	76.667	Nannospalax_galili
ENSCSAVG00000002455	-	50	73.958	ENSNBRG00000001914	cherp	55	62.097	Neolamprologus_brichardi
ENSCSAVG00000002455	-	52	51.724	ENSMEUG00000010840	CHERP	57	40.784	Notamacropus_eugenii
ENSCSAVG00000002455	-	51	66.346	ENSODEG00000001528	CHERP	50	76.667	Octodon_degus
ENSCSAVG00000002455	-	51	73.958	ENSONIG00000007686	cherp	54	61.600	Oreochromis_niloticus
ENSCSAVG00000002455	-	51	72.917	ENSORLG00020013142	cherp	81	38.889	Oryzias_latipes_hni
ENSCSAVG00000002455	-	51	72.917	ENSOMEG00000016947	cherp	73	37.879	Oryzias_melastigma
ENSCSAVG00000002455	-	51	66.346	ENSPPAG00000029195	CHERP	51	76.667	Pan_paniscus
ENSCSAVG00000002455	-	73	44.940	ENSPTIG00000019778	CHERP	50	76.667	Panthera_tigris_altaica
ENSCSAVG00000002455	-	51	66.346	ENSPTRG00000010647	CHERP	50	76.667	Pan_troglodytes
ENSCSAVG00000002455	-	51	66.346	ENSPANG00000011698	CHERP	51	76.667	Papio_anubis
ENSCSAVG00000002455	-	57	53.472	ENSPSIG00000011974	CHERP	79	33.333	Pelodiscus_sinensis
ENSCSAVG00000002455	-	61	75.269	ENSPMGG00000023606	cherp	61	75.269	Periophthalmus_magnuspinnatus
ENSCSAVG00000002455	-	51	65.385	ENSPCIG00000019615	CHERP	75	33.556	Phascolarctos_cinereus
ENSCSAVG00000002455	-	51	73.958	ENSPFOG00000016899	cherp	50	60.156	Poecilia_formosa
ENSCSAVG00000002455	-	51	66.346	ENSPPYG00000009691	CHERP	51	76.667	Pongo_abelii
ENSCSAVG00000002455	-	69	61.728	ENSPCAG00000001337	CHERP	74	57.778	Procavia_capensis
ENSCSAVG00000002455	-	66	61.728	ENSPVAG00000004320	CHERP	62	74.444	Pteropus_vampyrus
ENSCSAVG00000002455	-	51	73.958	ENSPNYG00000003942	cherp	50	77.778	Pundamilia_nyererei
ENSCSAVG00000002455	-	53	75.581	ENSPNAG00000017179	cherp	57	77.419	Pygocentrus_nattereri
ENSCSAVG00000002455	-	51	66.346	ENSRBIG00000038621	CHERP	51	76.667	Rhinopithecus_bieti
ENSCSAVG00000002455	-	51	66.346	ENSRROG00000040770	CHERP	53	76.667	Rhinopithecus_roxellana
ENSCSAVG00000002455	-	51	66.346	ENSSBOG00000014492	CHERP	50	77.465	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002455	-	50	70.213	ENSSHAG00000010752	CHERP	66	40.784	Sarcophilus_harrisii
ENSCSAVG00000002455	-	54	60.305	ENSSMAG00000005362	cherp	52	48.315	Scophthalmus_maximus
ENSCSAVG00000002455	-	50	77.778	ENSSDUG00000019712	cherp	78	33.471	Seriola_dumerili
ENSCSAVG00000002455	-	50	77.778	ENSSLDG00000012659	cherp	59	45.178	Seriola_lalandi_dorsalis
ENSCSAVG00000002455	-	51	65.385	ENSSPUG00000008901	CHERP	77	34.642	Sphenodon_punctatus
ENSCSAVG00000002455	-	54	77.778	ENSSPAG00000010681	cherp	53	49.451	Stegastes_partitus
ENSCSAVG00000002455	-	50	73.118	ENSTRUG00000007429	cherp	50	73.118	Takifugu_rubripes
ENSCSAVG00000002455	-	50	74.194	ENSTNIG00000003363	cherp	55	52.830	Tetraodon_nigroviridis
ENSCSAVG00000002455	-	55	55.634	ENSXETG00000002072	cherp	51	76.667	Xenopus_tropicalis