EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002514 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4230 bases
Position: chrreftig_79:88399-92628
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004255	MMR_HSR1	PF01926.23	5.7e-14	1	1
ENSCSAVP00000004257	MMR_HSR1	PF01926.23	6.3e-14	1	1
ENSCSAVP00000004256	MMR_HSR1	PF01926.23	7.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004318	-	1557	-	ENSCSAVP00000004255	519 (aa)	-	H2YG07
ENSCSAVT00000004319	-	1539	-	ENSCSAVP00000004256	513 (aa)	-	H2YG08
ENSCSAVT00000004320	-	1452	-	ENSCSAVP00000004257	484 (aa)	-	H2YG09

Gene Model

Click here to download ENSCSAVG00000002514's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002514's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002514	-	79	32.048	ENSCSAVG00000007354	-	69	32.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002514	-	96	56.379	ENSG00000041802	LSG1	98	52.000	Homo_sapiens
ENSCSAVG00000002514	-	99	49.323	ENSAPOG00000009694	lsg1	83	50.000	Acanthochromis_polyacanthus
ENSCSAVG00000002514	-	97	54.694	ENSAMEG00000009343	LSG1	76	54.694	Ailuropoda_melanoleuca
ENSCSAVG00000002514	-	92	57.674	ENSACIG00000012406	lsg1	80	54.618	Amphilophus_citrinellus
ENSCSAVG00000002514	-	98	51.292	ENSAOCG00000016066	lsg1	83	51.292	Amphiprion_ocellaris
ENSCSAVG00000002514	-	98	52.852	ENSAPEG00000003252	lsg1	92	45.789	Amphiprion_percula
ENSCSAVG00000002514	-	96	53.750	ENSATEG00000011794	lsg1	92	49.153	Anabas_testudineus
ENSCSAVG00000002514	-	83	61.929	ENSACAG00000004222	LSG1	76	54.673	Anolis_carolinensis
ENSCSAVG00000002514	-	96	54.733	ENSANAG00000021153	LSG1	75	54.733	Aotus_nancymaae
ENSCSAVG00000002514	-	97	54.217	ENSACLG00000000520	lsg1	77	54.217	Astatotilapia_calliptera
ENSCSAVG00000002514	-	93	54.812	ENSAMXG00000008271	lsg1	81	50.725	Astyanax_mexicanus
ENSCSAVG00000002514	-	100	54.618	ENSBTAG00000008461	LSG1	77	54.618	Bos_taurus
ENSCSAVG00000002514	-	98	45.399	WBGene00016907	C53H9.2	91	47.804	Caenorhabditis_elegans
ENSCSAVG00000002514	-	96	55.144	ENSCJAG00000013962	LSG1	75	55.144	Callithrix_jacchus
ENSCSAVG00000002514	-	88	59.615	ENSCAFG00000013445	LSG1	72	59.615	Canis_familiaris
ENSCSAVG00000002514	-	94	55.372	ENSCAFG00020002216	LSG1	73	59.804	Canis_lupus_dingo
ENSCSAVG00000002514	-	100	54.365	ENSCHIG00000015769	LSG1	78	54.365	Capra_hircus
ENSCSAVG00000002514	-	96	55.556	ENSTSYG00000001447	LSG1	75	55.556	Carlito_syrichta
ENSCSAVG00000002514	-	91	57.870	ENSCAPG00000009856	LSG1	78	57.870	Cavia_aperea
ENSCSAVG00000002514	-	96	54.733	ENSCCAG00000035744	LSG1	75	54.733	Cebus_capucinus
ENSCSAVG00000002514	-	96	56.735	ENSCATG00000042060	LSG1	84	48.387	Cercocebus_atys
ENSCSAVG00000002514	-	96	56.612	ENSCSAG00000008796	LSG1	69	56.612	Chlorocebus_sabaeus
ENSCSAVG00000002514	-	92	57.000	ENSCPBG00000015941	LSG1	58	57.868	Chrysemys_picta_bellii
ENSCSAVG00000002514	-	100	79.132	ENSCING00000007079	-	100	83.478	Ciona_intestinalis
ENSCSAVG00000002514	-	96	56.198	ENSCANG00000030709	LSG1	75	56.198	Colobus_angolensis_palliatus
ENSCSAVG00000002514	-	93	62.245	ENSCGRG00001019846	Lsg1	81	53.992	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002514	-	93	62.245	ENSCGRG00000014617	Lsg1	80	53.992	Cricetulus_griseus_crigri
ENSCSAVG00000002514	-	95	49.606	ENSCSEG00000008522	lsg1	85	48.250	Cynoglossus_semilaevis
ENSCSAVG00000002514	-	96	54.032	ENSCVAG00000002484	lsg1	81	53.788	Cyprinodon_variegatus
ENSCSAVG00000002514	-	99	52.920	ENSDARG00000015352	lsg1	82	52.920	Danio_rerio
ENSCSAVG00000002514	-	89	63.265	ENSDNOG00000006224	LSG1	68	63.265	Dasypus_novemcinctus
ENSCSAVG00000002514	-	100	51.367	FBgn0266284	Ns3	92	47.811	Drosophila_melanogaster
ENSCSAVG00000002514	-	72	70.968	ENSETEG00000003888	LSG1	56	71.277	Echinops_telfairi
ENSCSAVG00000002514	-	82	54.023	ENSEBUG00000003119	lsg1	63	54.023	Eptatretus_burgeri
ENSCSAVG00000002514	-	89	63.265	ENSEASG00005000678	LSG1	67	63.265	Equus_asinus_asinus
ENSCSAVG00000002514	-	89	63.265	ENSECAG00000017659	LSG1	67	63.265	Equus_caballus
ENSCSAVG00000002514	-	100	49.328	ENSELUG00000023973	lsg1	92	45.671	Esox_lucius
ENSCSAVG00000002514	-	96	54.694	ENSFCAG00000024957	LSG1	76	54.694	Felis_catus
ENSCSAVG00000002514	-	84	60.891	ENSFALG00000007210	LSG1	71	61.809	Ficedula_albicollis
ENSCSAVG00000002514	-	83	69.461	ENSFDAG00000017373	LSG1	64	69.461	Fukomys_damarensis
ENSCSAVG00000002514	-	91	57.333	ENSFHEG00000003680	lsg1	84	48.732	Fundulus_heteroclitus
ENSCSAVG00000002514	-	87	56.853	ENSGMOG00000015834	lsg1	73	56.566	Gadus_morhua
ENSCSAVG00000002514	-	92	55.217	ENSGALG00000007058	LSG1	65	63.021	Gallus_gallus
ENSCSAVG00000002514	-	98	53.226	ENSGAFG00000015831	lsg1	85	53.030	Gambusia_affinis
ENSCSAVG00000002514	-	94	53.138	ENSGACG00000009323	lsg1	83	51.095	Gasterosteus_aculeatus
ENSCSAVG00000002514	-	96	55.967	ENSGGOG00000000520	LSG1	75	55.967	Gorilla_gorilla
ENSCSAVG00000002514	-	97	54.217	ENSHBUG00000005659	lsg1	78	54.217	Haplochromis_burtoni
ENSCSAVG00000002514	-	99	50.094	ENSHGLG00000017390	LSG1	84	50.844	Heterocephalus_glaber_female
ENSCSAVG00000002514	-	99	50.094	ENSHGLG00100018587	LSG1	84	50.844	Heterocephalus_glaber_male
ENSCSAVG00000002514	-	92	57.674	ENSHCOG00000016848	lsg1	78	55.020	Hippocampus_comes
ENSCSAVG00000002514	-	99	50.929	ENSIPUG00000008631	lsg1	85	50.929	Ictalurus_punctatus
ENSCSAVG00000002514	-	55	64.935	ENSSTOG00000010234	LSG1	50	64.935	Ictidomys_tridecemlineatus
ENSCSAVG00000002514	-	86	66.092	ENSJJAG00000015513	Lsg1	80	55.378	Jaculus_jaculus
ENSCSAVG00000002514	-	98	49.222	ENSKMAG00000009681	lsg1	84	49.711	Kryptolebias_marmoratus
ENSCSAVG00000002514	-	98	50.509	ENSLBEG00000024261	lsg1	93	46.690	Labrus_bergylta
ENSCSAVG00000002514	-	94	60.714	ENSLACG00000013399	LSG1	80	50.190	Latimeria_chalumnae
ENSCSAVG00000002514	-	92	58.605	ENSLOCG00000004918	lsg1	78	55.020	Lepisosteus_oculatus
ENSCSAVG00000002514	-	90	61.735	ENSLAFG00000012919	-	79	54.365	Loxodonta_africana
ENSCSAVG00000002514	-	96	56.379	ENSMFAG00000039903	LSG1	84	48.208	Macaca_fascicularis
ENSCSAVG00000002514	-	96	56.379	ENSMMUG00000010708	LSG1	84	49.642	Macaca_mulatta
ENSCSAVG00000002514	-	96	56.379	ENSMNEG00000031538	LSG1	84	47.849	Macaca_nemestrina
ENSCSAVG00000002514	-	96	56.379	ENSMLEG00000041184	LSG1	84	49.027	Mandrillus_leucophaeus
ENSCSAVG00000002514	-	97	52.823	ENSMAMG00000000470	lsg1	81	52.823	Mastacembelus_armatus
ENSCSAVG00000002514	-	97	54.217	ENSMZEG00005017865	lsg1	78	54.217	Maylandia_zebra
ENSCSAVG00000002514	-	78	54.598	ENSMGAG00000007050	LSG1	66	61.979	Meleagris_gallopavo
ENSCSAVG00000002514	-	88	61.224	ENSMAUG00000016976	Lsg1	70	62.500	Mesocricetus_auratus
ENSCSAVG00000002514	-	97	54.400	ENSMICG00000049087	LSG1	77	54.400	Microcebus_murinus
ENSCSAVG00000002514	-	99	53.030	ENSMOCG00000022136	Lsg1	81	53.030	Microtus_ochrogaster
ENSCSAVG00000002514	-	96	52.532	ENSMMOG00000008884	lsg1	83	53.416	Mola_mola
ENSCSAVG00000002514	-	95	52.439	ENSMODG00000019828	LSG1	76	52.439	Monodelphis_domestica
ENSCSAVG00000002514	-	89	62.245	MGP_CAROLIEiJ_G0020648	Lsg1	78	54.000	Mus_caroli
ENSCSAVG00000002514	-	89	62.755	ENSMUSG00000022538	Lsg1	68	64.062	Mus_musculus
ENSCSAVG00000002514	-	87	62.245	MGP_PahariEiJ_G0016352	Lsg1	68	63.542	Mus_pahari
ENSCSAVG00000002514	-	89	62.245	MGP_SPRETEiJ_G0021544	Lsg1	78	54.000	Mus_spretus
ENSCSAVG00000002514	-	90	61.165	ENSMPUG00000003734	LSG1	67	62.944	Mustela_putorius_furo
ENSCSAVG00000002514	-	96	57.551	ENSMLUG00000012548	LSG1	76	57.551	Myotis_lucifugus
ENSCSAVG00000002514	-	95	54.032	ENSNGAG00000021872	Lsg1	84	48.609	Nannospalax_galili
ENSCSAVG00000002514	-	96	55.967	ENSNLEG00000008293	LSG1	75	55.967	Nomascus_leucogenys
ENSCSAVG00000002514	-	67	51.546	ENSMEUG00000009041	-	64	51.546	Notamacropus_eugenii
ENSCSAVG00000002514	-	97	54.217	ENSONIG00000002635	lsg1	78	54.217	Oreochromis_niloticus
ENSCSAVG00000002514	-	94	49.315	ENSOANG00000012742	LSG1	82	49.315	Ornithorhynchus_anatinus
ENSCSAVG00000002514	-	98	56.000	ENSOCUG00000004817	LSG1	77	56.000	Oryctolagus_cuniculus
ENSCSAVG00000002514	-	98	49.900	ENSORLG00000007695	lsg1	93	47.199	Oryzias_latipes
ENSCSAVG00000002514	-	95	55.794	ENSORLG00020016286	lsg1	81	55.422	Oryzias_latipes_hni
ENSCSAVG00000002514	-	98	50.507	ENSORLG00015012025	lsg1	93	47.513	Oryzias_latipes_hsok
ENSCSAVG00000002514	-	98	49.799	ENSOMEG00000022379	lsg1	93	46.062	Oryzias_melastigma
ENSCSAVG00000002514	-	98	53.755	ENSOGAG00000003475	LSG1	78	53.755	Otolemur_garnettii
ENSCSAVG00000002514	-	99	54.365	ENSOARG00000020403	LSG1	77	54.365	Ovis_aries
ENSCSAVG00000002514	-	96	55.967	ENSPPAG00000029271	LSG1	84	49.369	Pan_paniscus
ENSCSAVG00000002514	-	96	54.733	ENSPPRG00000010281	LSG1	76	54.733	Panthera_pardus
ENSCSAVG00000002514	-	96	54.733	ENSPTIG00000010789	LSG1	77	54.733	Panthera_tigris_altaica
ENSCSAVG00000002514	-	96	55.967	ENSPTRG00000015760	LSG1	84	49.189	Pan_troglodytes
ENSCSAVG00000002514	-	83	70.659	ENSPANG00000018249	LSG1	84	48.208	Papio_anubis
ENSCSAVG00000002514	-	93	58.850	ENSPKIG00000002895	lsg1	81	55.985	Paramormyrops_kingsleyae
ENSCSAVG00000002514	-	86	55.941	ENSPSIG00000009821	LSG1	68	55.941	Pelodiscus_sinensis
ENSCSAVG00000002514	-	92	55.814	ENSPMGG00000000931	lsg1	79	55.814	Periophthalmus_magnuspinnatus
ENSCSAVG00000002514	-	83	68.862	ENSPEMG00000012082	-	85	48.301	Peromyscus_maniculatus_bairdii
ENSCSAVG00000002514	-	89	63.265	ENSPMAG00000007451	lsg1	67	63.265	Petromyzon_marinus
ENSCSAVG00000002514	-	84	59.821	ENSPCIG00000013890	LSG1	68	57.317	Phascolarctos_cinereus
ENSCSAVG00000002514	-	96	53.226	ENSPFOG00000021882	lsg1	79	53.030	Poecilia_formosa
ENSCSAVG00000002514	-	96	52.823	ENSPLAG00000019536	lsg1	79	52.652	Poecilia_latipinna
ENSCSAVG00000002514	-	96	52.016	ENSPMEG00000017281	lsg1	79	51.894	Poecilia_mexicana
ENSCSAVG00000002514	-	96	52.419	ENSPREG00000006048	lsg1	78	52.273	Poecilia_reticulata
ENSCSAVG00000002514	-	88	63.265	ENSPPYG00000014425	LSG1	73	62.944	Pongo_abelii
ENSCSAVG00000002514	-	80	65.094	ENSPCAG00000005511	LSG1	62	65.094	Procavia_capensis
ENSCSAVG00000002514	-	97	54.800	ENSPCOG00000012360	LSG1	76	54.800	Propithecus_coquereli
ENSCSAVG00000002514	-	97	54.217	ENSPNYG00000021994	lsg1	77	54.217	Pundamilia_nyererei
ENSCSAVG00000002514	-	98	55.242	ENSPNAG00000015533	lsg1	79	55.242	Pygocentrus_nattereri
ENSCSAVG00000002514	-	89	62.755	ENSRNOG00000001727	Lsg1	85	48.763	Rattus_norvegicus
ENSCSAVG00000002514	-	96	55.372	ENSRBIG00000029053	LSG1	75	55.372	Rhinopithecus_bieti
ENSCSAVG00000002514	-	96	55.372	ENSRROG00000037702	LSG1	75	55.372	Rhinopithecus_roxellana
ENSCSAVG00000002514	-	92	43.601	YGL099W	LSG1	70	45.676	Saccharomyces_cerevisiae
ENSCSAVG00000002514	-	88	63.265	ENSSBOG00000034938	LSG1	67	63.265	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002514	-	63	65.385	ENSSHAG00000003487	LSG1	60	65.385	Sarcophilus_harrisii
ENSCSAVG00000002514	-	95	55.085	ENSSFOG00015008955	lsg1	79	54.800	Scleropages_formosus
ENSCSAVG00000002514	-	92	57.209	ENSSDUG00000004622	lsg1	78	54.217	Seriola_dumerili
ENSCSAVG00000002514	-	98	48.337	ENSSLDG00000010869	lsg1	84	48.577	Seriola_lalandi_dorsalis
ENSCSAVG00000002514	-	59	64.912	ENSSARG00000012981	LSG1	52	52.697	Sorex_araneus
ENSCSAVG00000002514	-	92	60.204	ENSSPUG00000016347	LSG1	76	59.474	Sphenodon_punctatus
ENSCSAVG00000002514	-	88	59.686	ENSSPAG00000005508	lsg1	82	50.296	Stegastes_partitus
ENSCSAVG00000002514	-	96	55.102	ENSSSCG00000011827	LSG1	77	55.102	Sus_scrofa
ENSCSAVG00000002514	-	76	57.488	ENSTGUG00000009068	LSG1	65	58.333	Taeniopygia_guttata
ENSCSAVG00000002514	-	92	57.209	ENSTRUG00000017380	lsg1	79	54.217	Takifugu_rubripes
ENSCSAVG00000002514	-	95	55.745	ENSTNIG00000015570	lsg1	86	55.777	Tetraodon_nigroviridis
ENSCSAVG00000002514	-	96	48.507	ENSTTRG00000000559	LSG1	82	48.507	Tursiops_truncatus
ENSCSAVG00000002514	-	96	55.102	ENSUAMG00000012454	LSG1	72	61.929	Ursus_americanus
ENSCSAVG00000002514	-	96	55.102	ENSUMAG00000000855	LSG1	76	55.102	Ursus_maritimus
ENSCSAVG00000002514	-	93	51.311	ENSVPAG00000012400	LSG1	76	51.311	Vicugna_pacos
ENSCSAVG00000002514	-	88	60.096	ENSVVUG00000008956	LSG1	70	60.096	Vulpes_vulpes
ENSCSAVG00000002514	-	97	55.645	ENSXETG00000003451	lsg1	80	55.645	Xenopus_tropicalis
ENSCSAVG00000002514	-	96	53.629	ENSXCOG00000003239	lsg1	79	53.409	Xiphophorus_couchianus
ENSCSAVG00000002514	-	98	53.226	ENSXMAG00000005536	lsg1	84	50.286	Xiphophorus_maculatus