EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000002559 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
24413 bases
Position
chrreftig_98:363349-387761
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000004320SF3b1PF08920.101.4e-4511
ENSCSAVP00000004319SF3b1PF08920.101.8e-4511
ENSCSAVP00000004322SF3b1PF08920.101.9e-4311
ENSCSAVP00000004321SF3b1PF08920.107.3e-4311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000004383-3941-ENSCSAVP000000043191262 (aa)-H2YG70
ENSCSAVT00000004386-3889-ENSCSAVP000000043221176 (aa)-H2YG73
ENSCSAVT00000004385-4382-ENSCSAVP000000043211335 (aa)-H2YG72
ENSCSAVT00000004384-4310-ENSCSAVP000000043201310 (aa)-H2YG71
Gene Model
Click here to download ENSCSAVG00000002559's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002559's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000002559-9979.470ENSG00000115524SF3B19490.265Homo_sapiens
ENSCSAVG00000002559-9980.106ENSAPOG00000011894sf3b19980.075Acanthochromis_polyacanthus
ENSCSAVG00000002559-9979.604ENSAMEG00000013809SF3B19980.000Ailuropoda_melanoleuca
ENSCSAVG00000002559-9980.302ENSACIG00000020910sf3b19780.302Amphilophus_citrinellus
ENSCSAVG00000002559-9980.000ENSAOCG00000004478sf3b19980.000Amphiprion_ocellaris
ENSCSAVG00000002559-9980.000ENSAPEG00000012937sf3b19980.000Amphiprion_percula
ENSCSAVG00000002559-9979.744ENSATEG00000020435sf3b19979.759Anabas_testudineus
ENSCSAVG00000002559-9979.802ENSAPLG00000003993SF3B19979.954Anas_platyrhynchos
ENSCSAVG00000002559-9979.545ENSACAG00000009612SF3B19979.697Anolis_carolinensis
ENSCSAVG00000002559-9979.771ENSANAG00000021577SF3B19983.348Aotus_nancymaae
ENSCSAVG00000002559-9979.609ENSACLG00000023470sf3b19979.609Astatotilapia_calliptera
ENSCSAVG00000002559-9979.790ENSAMXG00000002219sf3b19979.774Astyanax_mexicanus
ENSCSAVG00000002559-9979.470ENSBTAG00000008915SF3B19979.864Bos_taurus
ENSCSAVG00000002559-10065.351WBGene00011605sftb-19964.749Caenorhabditis_elegans
ENSCSAVG00000002559-9979.470ENSCJAG00000003902SF3B19979.864Callithrix_jacchus
ENSCSAVG00000002559-9979.470ENSCAFG00000010826SF3B19979.864Canis_familiaris
ENSCSAVG00000002559-9979.470ENSCAFG00020004750SF3B19979.864Canis_lupus_dingo
ENSCSAVG00000002559-9979.893ENSCHIG00000015226SF3B19980.290Capra_hircus
ENSCSAVG00000002559-9979.695ENSTSYG00000009214SF3B19980.092Carlito_syrichta
ENSCSAVG00000002559-9979.470ENSCAPG00000006547SF3B19979.864Cavia_aperea
ENSCSAVG00000002559-9979.771ENSCPOG00000009353SF3B19980.168Cavia_porcellus
ENSCSAVG00000002559-9979.470ENSCCAG00000020506SF3B19979.864Cebus_capucinus
ENSCSAVG00000002559-9979.470ENSCATG00000035735SF3B19979.864Cercocebus_atys
ENSCSAVG00000002559-9979.665ENSCLAG00000014767SF3B19980.061Chinchilla_lanigera
ENSCSAVG00000002559-9979.470ENSCSAG00000011505SF3B19979.864Chlorocebus_sabaeus
ENSCSAVG00000002559-7883.616ENSCHOG00000009860SF3B17583.597Choloepus_hoffmanni
ENSCSAVG00000002559-9979.606ENSCPBG00000021902SF3B19983.235Chrysemys_picta_bellii
ENSCSAVG00000002559-6992.291ENSCING00000002558-9993.281Ciona_intestinalis
ENSCSAVG00000002559-9979.771ENSCANG00000029415SF3B19980.168Colobus_angolensis_palliatus
ENSCSAVG00000002559-10079.198ENSCGRG00001016990Sf3b19979.864Cricetulus_griseus_chok1gshd
ENSCSAVG00000002559-10079.198ENSCGRG00000005301Sf3b19979.864Cricetulus_griseus_crigri
ENSCSAVG00000002559-9976.755ENSCSEG00000003860sf3b19976.755Cynoglossus_semilaevis
ENSCSAVG00000002559-9680.031ENSCVAG00000003680sf3b19980.031Cyprinodon_variegatus
ENSCSAVG00000002559-9979.758ENSDARG00000056138sf3b19979.758Danio_rerio
ENSCSAVG00000002559-9979.410ENSDNOG00000011754SF3B19979.803Dasypus_novemcinctus
ENSCSAVG00000002559-9978.582ENSDORG00000002399Sf3b110078.582Dipodomys_ordii
ENSCSAVG00000002559-9975.147FBgn0031266Sf3b19975.147Drosophila_melanogaster
ENSCSAVG00000002559-8378.428ENSETEG00000009188SF3B19978.904Echinops_telfairi
ENSCSAVG00000002559-9880.430ENSEBUG00000004325sf3b110082.847Eptatretus_burgeri
ENSCSAVG00000002559-9979.470ENSEASG00005020159SF3B19779.864Equus_asinus_asinus
ENSCSAVG00000002559-9979.470ENSECAG00000021657SF3B19779.864Equus_caballus
ENSCSAVG00000002559-8792.219ENSEEUG00000000836SF3B18192.219Erinaceus_europaeus
ENSCSAVG00000002559-9979.388ENSELUG00000005977sf3b19879.537Esox_lucius
ENSCSAVG00000002559-10079.274ENSFCAG00000005038SF3B19979.864Felis_catus
ENSCSAVG00000002559-9979.878ENSFALG00000004281SF3B19980.030Ficedula_albicollis
ENSCSAVG00000002559-9979.470ENSFDAG00000017510SF3B19979.864Fukomys_damarensis
ENSCSAVG00000002559-9979.699ENSFHEG00000014333sf3b19979.699Fundulus_heteroclitus
ENSCSAVG00000002559-9979.729ENSGMOG00000006773sf3b19980.120Gadus_morhua
ENSCSAVG00000002559-9979.606ENSGALG00000008038SF3B19979.757Gallus_gallus
ENSCSAVG00000002559-9881.029ENSGAFG00000000704sf3b19981.029Gambusia_affinis
ENSCSAVG00000002559-9980.090ENSGACG00000008839sf3b19980.241Gasterosteus_aculeatus
ENSCSAVG00000002559-9979.756ENSGAGG00000017478SF3B19980.061Gopherus_agassizii
ENSCSAVG00000002559-9978.650ENSGGOG00000009264SF3B19879.097Gorilla_gorilla
ENSCSAVG00000002559-9979.653ENSHBUG00000007705sf3b19979.653Haplochromis_burtoni
ENSCSAVG00000002559-9979.665ENSHGLG00000008285-9980.061Heterocephalus_glaber_female
ENSCSAVG00000002559-9978.065ENSHGLG00100005535-9978.311Heterocephalus_glaber_male
ENSCSAVG00000002559-9979.865ENSHCOG00000016775sf3b19979.940Hippocampus_comes
ENSCSAVG00000002559-9980.000ENSIPUG00000013171sf3b19979.910Ictalurus_punctatus
ENSCSAVG00000002559-9979.470ENSSTOG00000011034SF3B19979.864Ictidomys_tridecemlineatus
ENSCSAVG00000002559-9979.893ENSJJAG00000010903Sf3b19980.290Jaculus_jaculus
ENSCSAVG00000002559-9980.120ENSKMAG00000004009sf3b19980.045Kryptolebias_marmoratus
ENSCSAVG00000002559-9980.348ENSLBEG00000022208sf3b19980.272Labrus_bergylta
ENSCSAVG00000002559-9977.938ENSLACG00000014832SF3B19978.005Latimeria_chalumnae
ENSCSAVG00000002559-9979.730ENSLOCG00000003899sf3b19979.805Lepisosteus_oculatus
ENSCSAVG00000002559-9979.470ENSLAFG00000001956SF3B19979.864Loxodonta_africana
ENSCSAVG00000002559-9979.665ENSMMUG00000022430SF3B19980.061Macaca_mulatta
ENSCSAVG00000002559-9979.832ENSMNEG00000042333SF3B19983.348Macaca_nemestrina
ENSCSAVG00000002559-9580.498ENSMLEG00000026141SF3B19980.033Mandrillus_leucophaeus
ENSCSAVG00000002559-9979.834ENSMAMG00000010241sf3b19979.834Mastacembelus_armatus
ENSCSAVG00000002559-9979.609ENSMZEG00005021254sf3b19979.609Maylandia_zebra
ENSCSAVG00000002559-9979.268ENSMGAG00000007017SF3B19979.421Meleagris_gallopavo
ENSCSAVG00000002559-9975.781ENSMAUG00000009071Sf3b19976.484Mesocricetus_auratus
ENSCSAVG00000002559-9979.786ENSMICG00000013879SF3B19980.183Microcebus_murinus
ENSCSAVG00000002559-9975.495ENSMOCG00000000455Sf3b19975.894Microtus_ochrogaster
ENSCSAVG00000002559-8379.620ENSMMOG00000000475sf3b19979.620Mola_mola
ENSCSAVG00000002559-9979.075ENSMODG00000012275SF3B19979.394Monodelphis_domestica
ENSCSAVG00000002559-9979.759ENSMALG00000017211sf3b19979.759Monopterus_albus
ENSCSAVG00000002559-9979.470MGP_CAROLIEiJ_G0014141Sf3b19979.864Mus_caroli
ENSCSAVG00000002559-9979.470ENSMUSG00000025982Sf3b19979.864Mus_musculus
ENSCSAVG00000002559-9979.470MGP_SPRETEiJ_G0014947Sf3b19979.864Mus_spretus
ENSCSAVG00000002559-9979.470ENSMPUG00000007799SF3B19979.864Mustela_putorius_furo
ENSCSAVG00000002559-9978.333ENSMLUG00000000840SF3B19978.728Myotis_lucifugus
ENSCSAVG00000002559-9979.771ENSNGAG00000021884-9980.168Nannospalax_galili
ENSCSAVG00000002559-9977.492ENSNBRG00000015816sf3b19977.492Neolamprologus_brichardi
ENSCSAVG00000002559-9979.771ENSNLEG00000006861SF3B19980.168Nomascus_leucogenys
ENSCSAVG00000002559-6994.334ENSMEUG00000015848-6694.334Notamacropus_eugenii
ENSCSAVG00000002559-9971.657ENSOPRG00000008596SF3B19971.657Ochotona_princeps
ENSCSAVG00000002559-9979.470ENSODEG00000011153-9979.864Octodon_degus
ENSCSAVG00000002559-9979.609ENSONIG00000013758sf3b19979.609Oreochromis_niloticus
ENSCSAVG00000002559-9178.299ENSOCUG00000012722-9684.215Oryctolagus_cuniculus
ENSCSAVG00000002559-9980.060ENSORLG00000020219sf3b19980.060Oryzias_latipes
ENSCSAVG00000002559-9980.060ENSORLG00020001746sf3b19980.060Oryzias_latipes_hni
ENSCSAVG00000002559-6475.850ENSORLG00015001759sf3b19875.850Oryzias_latipes_hsok
ENSCSAVG00000002559-9980.211ENSOMEG00000019231sf3b19980.211Oryzias_melastigma
ENSCSAVG00000002559-5053.026ENSOGAG00000000267-9959.056Otolemur_garnettii
ENSCSAVG00000002559-9979.470ENSOARG00000015374SF3B19979.864Ovis_aries
ENSCSAVG00000002559-9979.771ENSPPAG00000035007SF3B19980.168Pan_paniscus
ENSCSAVG00000002559-9979.470ENSPPRG00000009090SF3B19979.864Panthera_pardus
ENSCSAVG00000002559-9979.470ENSPTIG00000021557SF3B19979.864Panthera_tigris_altaica
ENSCSAVG00000002559-9975.332ENSPTRG00000012771SF3B19875.748Pan_troglodytes
ENSCSAVG00000002559-9979.470ENSPANG00000013417SF3B19979.864Papio_anubis
ENSCSAVG00000002559-9979.367ENSPKIG00000000784sf3b19979.367Paramormyrops_kingsleyae
ENSCSAVG00000002559-9979.281ENSPSIG00000017222SF3B19879.603Pelodiscus_sinensis
ENSCSAVG00000002559-9180.066ENSPMGG00000004330sf3b19980.149Periophthalmus_magnuspinnatus
ENSCSAVG00000002559-9979.665ENSPEMG00000010699Sf3b110080.061Peromyscus_maniculatus_bairdii
ENSCSAVG00000002559-9979.788ENSPMAG00000001311sf3b19980.167Petromyzon_marinus
ENSCSAVG00000002559-9979.075ENSPCIG00000010642SF3B19979.394Phascolarctos_cinereus
ENSCSAVG00000002559-9980.150ENSPFOG00000000073sf3b19980.150Poecilia_formosa
ENSCSAVG00000002559-9980.135ENSPLAG00000002293sf3b19980.135Poecilia_latipinna
ENSCSAVG00000002559-9980.135ENSPMEG00000000446sf3b19880.135Poecilia_mexicana
ENSCSAVG00000002559-9980.135ENSPREG00000019652sf3b19980.135Poecilia_reticulata
ENSCSAVG00000002559-9985.192ENSPPYG00000013044SF3B19985.192Pongo_abelii
ENSCSAVG00000002559-9979.318ENSPCAG00000009292SF3B19979.712Procavia_capensis
ENSCSAVG00000002559-9979.545ENSPCOG00000024074SF3B19979.939Propithecus_coquereli
ENSCSAVG00000002559-9979.470ENSPVAG00000008302SF3B19979.864Pteropus_vampyrus
ENSCSAVG00000002559-9979.774ENSPNYG00000014939sf3b19979.774Pundamilia_nyererei
ENSCSAVG00000002559-9979.850ENSPNAG00000008288sf3b19979.850Pygocentrus_nattereri
ENSCSAVG00000002559-9979.470ENSRNOG00000013516Sf3b19979.864Rattus_norvegicus
ENSCSAVG00000002559-9976.350ENSRBIG00000026096SF3B19976.748Rhinopithecus_bieti
ENSCSAVG00000002559-9979.544ENSRROG00000031308SF3B19979.939Rhinopithecus_roxellana
ENSCSAVG00000002559-9979.470ENSSBOG00000020080SF3B19979.864Saimiri_boliviensis_boliviensis
ENSCSAVG00000002559-10078.744ENSSHAG00000017564SF3B110079.063Sarcophilus_harrisii
ENSCSAVG00000002559-9979.398ENSSFOG00015021535sf3b19979.323Scleropages_formosus
ENSCSAVG00000002559-9979.730ENSSMAG00000013977sf3b19979.880Scophthalmus_maximus
ENSCSAVG00000002559-9979.759ENSSDUG00000017422sf3b19979.759Seriola_dumerili
ENSCSAVG00000002559-9979.759ENSSLDG00000019495sf3b19979.759Seriola_lalandi_dorsalis
ENSCSAVG00000002559-8489.418ENSSARG00000007016SF3B17689.418Sorex_araneus
ENSCSAVG00000002559-9979.378ENSSPUG00000000410SF3B19979.682Sphenodon_punctatus
ENSCSAVG00000002559-9979.985ENSSPAG00000010451sf3b19979.985Stegastes_partitus
ENSCSAVG00000002559-9675.960ENSSSCG00000016075SF3B19983.348Sus_scrofa
ENSCSAVG00000002559-9979.606ENSTGUG00000010553SF3B19979.757Taeniopygia_guttata
ENSCSAVG00000002559-9980.302ENSTRUG00000015534sf3b19980.377Takifugu_rubripes
ENSCSAVG00000002559-8586.006ENSTBEG00000008714SF3B19386.210Tupaia_belangeri
ENSCSAVG00000002559-9285.714ENSTTRG00000003414SF3B19285.714Tursiops_truncatus
ENSCSAVG00000002559-9572.057ENSUAMG00000018506SF3B19592.562Ursus_americanus
ENSCSAVG00000002559-9979.470ENSUMAG00000020945SF3B19979.864Ursus_maritimus
ENSCSAVG00000002559-9884.241ENSVPAG00000005798SF3B19584.308Vicugna_pacos
ENSCSAVG00000002559-9979.621ENSVVUG00000025948SF3B19479.864Vulpes_vulpes
ENSCSAVG00000002559-9978.653ENSXETG00000013339sf3b19978.804Xenopus_tropicalis
ENSCSAVG00000002559-9979.905ENSXCOG00000018086sf3b19779.968Xiphophorus_couchianus
ENSCSAVG00000002559-9980.135ENSXMAG00000007369sf3b19980.135Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us