EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002581 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2209 bases
Position: chrreftig_113:112440-114648
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004366	RRM_1	PF00076.22	8.9e-32	1	2
ENSCSAVP00000004366	RRM_1	PF00076.22	8.9e-32	2	2
ENSCSAVP00000004365	RRM_1	PF00076.22	1.1e-31	1	2
ENSCSAVP00000004365	RRM_1	PF00076.22	1.1e-31	2	2
ENSCSAVP00000004364	RRM_1	PF00076.22	1.3e-31	1	2
ENSCSAVP00000004364	RRM_1	PF00076.22	1.3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004430	-	778	-	ENSCSAVP00000004366	259 (aa)	-	H2YGB7
ENSCSAVT00000004428	-	1277	-	ENSCSAVP00000004364	289 (aa)	-	H2YGB5
ENSCSAVT00000004429	-	1072	-	ENSCSAVP00000004365	271 (aa)	-	H2YGB6

Gene Model

Click here to download ENSCSAVG00000002581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002581	-	88	39.655	ENSCSAVG00000006093	-	96	38.776
ENSCSAVG00000002581	-	69	63.000	ENSCSAVG00000011376	-	78	63.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002581	-	70	59.669	ENSAPOG00000023399	-	59	61.364	Acanthochromis_polyacanthus
ENSCSAVG00000002581	-	70	64.088	ENSAPOG00000020244	srsf4	52	63.731	Acanthochromis_polyacanthus
ENSCSAVG00000002581	-	70	63.536	ENSACIG00000018649	srsf4	89	64.228	Amphilophus_citrinellus
ENSCSAVG00000002581	-	60	64.198	ENSAOCG00000005997	srsf4	90	64.815	Amphiprion_ocellaris
ENSCSAVG00000002581	-	71	61.828	ENSATEG00000005680	srsf4	88	54.982	Anabas_testudineus
ENSCSAVG00000002581	-	70	65.193	ENSACLG00000003395	srsf4	69	69.880	Astatotilapia_calliptera
ENSCSAVG00000002581	-	70	61.957	ENSACLG00000021269	-	50	62.567	Astatotilapia_calliptera
ENSCSAVG00000002581	-	70	63.536	ENSAMXG00000034811	srsf4	80	64.634	Astyanax_mexicanus
ENSCSAVG00000002581	-	69	47.000	WBGene00004698	rsp-1	97	46.575	Caenorhabditis_elegans
ENSCSAVG00000002581	-	97	60.076	ENSCHIG00000022096	SRSF4	64	56.667	Capra_hircus
ENSCSAVG00000002581	-	98	53.459	ENSCING00000024718	-	57	66.000	Ciona_intestinalis
ENSCSAVG00000002581	-	100	75.082	ENSCING00000012370	-	100	76.370	Ciona_intestinalis
ENSCSAVG00000002581	-	69	52.041	ENSCING00000011362	-	65	53.927	Ciona_intestinalis
ENSCSAVG00000002581	-	71	61.809	ENSCING00000020631	-	80	63.131	Ciona_intestinalis
ENSCSAVG00000002581	-	89	49.242	ENSCSEG00000010058	srsf4	75	65.854	Cynoglossus_semilaevis
ENSCSAVG00000002581	-	66	65.730	ENSDARG00000105293	srsf4	65	72.464	Danio_rerio
ENSCSAVG00000002581	-	70	62.366	FBgn0004587	B52	99	55.224	Drosophila_melanogaster
ENSCSAVG00000002581	-	88	48.498	ENSEBUG00000001681	srsf4	66	56.250	Eptatretus_burgeri
ENSCSAVG00000002581	-	64	49.153	ENSEBUG00000003129	srsf4	68	50.633	Eptatretus_burgeri
ENSCSAVG00000002581	-	70	54.271	ENSELUG00000017551	srsf4	92	57.364	Esox_lucius
ENSCSAVG00000002581	-	70	63.043	ENSFHEG00000007472	srsf4	74	75.362	Fundulus_heteroclitus
ENSCSAVG00000002581	-	70	61.622	ENSGMOG00000012906	srsf4	83	54.064	Gadus_morhua
ENSCSAVG00000002581	-	97	47.451	ENSGAFG00000018496	srsf4	64	59.551	Gambusia_affinis
ENSCSAVG00000002581	-	70	63.536	ENSGACG00000002389	srsf4	54	66.102	Gasterosteus_aculeatus
ENSCSAVG00000002581	-	70	61.957	ENSHBUG00000011326	-	50	62.567	Haplochromis_burtoni
ENSCSAVG00000002581	-	74	73.846	ENSHCOG00000012540	srsf4	66	64.444	Hippocampus_comes
ENSCSAVG00000002581	-	93	48.649	ENSKMAG00000013631	srsf4	94	52.797	Kryptolebias_marmoratus
ENSCSAVG00000002581	-	70	64.130	ENSMAMG00000004888	srsf4	70	63.415	Mastacembelus_armatus
ENSCSAVG00000002581	-	70	65.193	ENSMZEG00005026275	srsf4	69	69.880	Maylandia_zebra
ENSCSAVG00000002581	-	88	55.159	ENSMMOG00000013653	srsf4	97	55.636	Mola_mola
ENSCSAVG00000002581	-	69	67.568	ENSMODG00000011052	SRSF4	54	69.318	Monodelphis_domestica
ENSCSAVG00000002581	-	70	63.636	ENSMALG00000013392	srsf4	65	65.537	Monopterus_albus
ENSCSAVG00000002581	-	70	58.011	ENSNLEG00000030787	-	61	58.989	Nomascus_leucogenys
ENSCSAVG00000002581	-	94	55.056	ENSORLG00020016052	srsf4	99	54.317	Oryzias_latipes_hni
ENSCSAVG00000002581	-	94	54.118	ENSORLG00015007566	srsf4	69	66.667	Oryzias_latipes_hsok
ENSCSAVG00000002581	-	70	65.193	ENSOMEG00000005541	srsf4	50	66.667	Oryzias_melastigma
ENSCSAVG00000002581	-	70	62.032	ENSPMGG00000013436	srsf4	94	61.194	Periophthalmus_magnuspinnatus
ENSCSAVG00000002581	-	69	55.738	ENSPMAG00000009397	srsf4	94	55.513	Petromyzon_marinus
ENSCSAVG00000002581	-	70	64.641	ENSPLAG00000008812	srsf4	63	58.989	Poecilia_latipinna
ENSCSAVG00000002581	-	70	64.641	ENSPMEG00000023638	srsf4	52	66.292	Poecilia_mexicana
ENSCSAVG00000002581	-	70	63.536	ENSPNYG00000003796	srsf4	55	67.232	Pundamilia_nyererei
ENSCSAVG00000002581	-	69	63.687	ENSPNAG00000023844	srsf4	52	65.537	Pygocentrus_nattereri
ENSCSAVG00000002581	-	71	64.516	ENSSFOG00015020292	srsf4	95	55.556	Scleropages_formosus
ENSCSAVG00000002581	-	70	62.983	ENSSDUG00000007387	srsf4	53	66.102	Seriola_dumerili
ENSCSAVG00000002581	-	70	58.564	ENSSLDG00000009745	srsf4	96	49.817	Seriola_lalandi_dorsalis
ENSCSAVG00000002581	-	66	66.484	ENSSPAG00000014538	srsf4	82	65.556	Stegastes_partitus
ENSCSAVG00000002581	-	56	65.563	ENSTGUG00000000765	SRSF4	52	55.785	Taeniopygia_guttata
ENSCSAVG00000002581	-	70	62.983	ENSTRUG00000011891	srsf4	61	62.234	Takifugu_rubripes
ENSCSAVG00000002581	-	98	49.141	ENSXCOG00000003212	-	59	57.767	Xiphophorus_couchianus
ENSCSAVG00000002581	-	70	64.641	ENSXCOG00000018826	srsf4	89	62.712	Xiphophorus_couchianus