EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000002667 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 808 bases
Position: chrreftig_11:176358-177165
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004497	RNA_pol_Rbc25	PF08292.12	1.2e-06	1	1
ENSCSAVP00000004497	S1	PF00575.23	7.6e-21	1	1
ENSCSAVP00000004497	SHS2_Rpb7-N	PF03876.17	4.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004563	-	808	-	ENSCSAVP00000004497	172 (aa)	-	H2YGP8

Gene Model

Click here to download ENSCSAVG00000002667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002667's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002667	-	100	88.372	ENSG00000168002	POLR2G	100	97.561	Homo_sapiens
ENSCSAVG00000002667	-	98	87.574	ENSAPOG00000010949	polr2gl	99	87.574	Acanthochromis_polyacanthus
ENSCSAVG00000002667	-	100	88.372	ENSAMEG00000006386	POLR2G	100	88.372	Ailuropoda_melanoleuca
ENSCSAVG00000002667	-	98	87.574	ENSACIG00000007252	polr2gl	88	87.574	Amphilophus_citrinellus
ENSCSAVG00000002667	-	100	88.372	ENSAOCG00000013628	polr2gl	100	88.372	Amphiprion_ocellaris
ENSCSAVG00000002667	-	100	88.372	ENSAPEG00000011229	polr2gl	100	88.372	Amphiprion_percula
ENSCSAVG00000002667	-	100	88.372	ENSATEG00000013382	polr2gl	100	88.372	Anabas_testudineus
ENSCSAVG00000002667	-	97	88.623	ENSACAG00000001005	POLR2G	97	88.623	Anolis_carolinensis
ENSCSAVG00000002667	-	100	88.372	ENSANAG00000037428	POLR2G	100	88.372	Aotus_nancymaae
ENSCSAVG00000002667	-	100	88.953	ENSACLG00000014753	polr2gl	100	88.953	Astatotilapia_calliptera
ENSCSAVG00000002667	-	100	88.372	ENSAMXG00000030439	polr2gl	100	88.372	Astyanax_mexicanus
ENSCSAVG00000002667	-	100	88.372	ENSBTAG00000009483	POLR2G	100	88.372	Bos_taurus
ENSCSAVG00000002667	-	98	77.515	WBGene00021845	rpb-7	86	77.515	Caenorhabditis_elegans
ENSCSAVG00000002667	-	100	88.372	ENSCJAG00000018688	POLR2G	100	88.372	Callithrix_jacchus
ENSCSAVG00000002667	-	55	90.526	ENSCAFG00000015461	POLR2G	81	90.526	Canis_familiaris
ENSCSAVG00000002667	-	100	88.372	ENSCAFG00020013136	POLR2G	100	88.372	Canis_lupus_dingo
ENSCSAVG00000002667	-	98	89.349	ENSCHIG00000023730	POLR2G	89	89.349	Capra_hircus
ENSCSAVG00000002667	-	100	87.791	ENSTSYG00000011918	POLR2G	100	87.791	Carlito_syrichta
ENSCSAVG00000002667	-	76	85.496	ENSCAPG00000017572	POLR2G	100	85.496	Cavia_aperea
ENSCSAVG00000002667	-	100	88.372	ENSCPOG00000036420	POLR2G	100	88.372	Cavia_porcellus
ENSCSAVG00000002667	-	100	81.395	ENSCCAG00000033483	-	95	81.395	Cebus_capucinus
ENSCSAVG00000002667	-	100	88.372	ENSCATG00000034443	POLR2G	100	88.372	Cercocebus_atys
ENSCSAVG00000002667	-	100	88.372	ENSCLAG00000000802	POLR2G	100	88.372	Chinchilla_lanigera
ENSCSAVG00000002667	-	100	88.372	ENSCSAG00000006715	POLR2G	100	88.372	Chlorocebus_sabaeus
ENSCSAVG00000002667	-	77	87.970	ENSCHOG00000009928	POLR2G	100	87.970	Choloepus_hoffmanni
ENSCSAVG00000002667	-	100	88.372	ENSCPBG00000017972	POLR2G	100	88.372	Chrysemys_picta_bellii
ENSCSAVG00000002667	-	100	94.767	ENSCING00000004991	-	100	94.767	Ciona_intestinalis
ENSCSAVG00000002667	-	100	88.372	ENSCANG00000043203	POLR2G	100	88.372	Colobus_angolensis_palliatus
ENSCSAVG00000002667	-	100	88.372	ENSCGRG00001022692	-	100	88.372	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002667	-	100	81.977	ENSCGRG00001011370	-	100	81.977	Cricetulus_griseus_chok1gshd
ENSCSAVG00000002667	-	100	88.372	ENSCGRG00000015350	Polr2g	100	88.372	Cricetulus_griseus_crigri
ENSCSAVG00000002667	-	98	89.286	ENSCSEG00000011991	polr2gl	90	89.286	Cynoglossus_semilaevis
ENSCSAVG00000002667	-	100	88.372	ENSCVAG00000021090	polr2gl	100	88.372	Cyprinodon_variegatus
ENSCSAVG00000002667	-	100	87.791	ENSDARG00000056127	polr2gl	100	87.791	Danio_rerio
ENSCSAVG00000002667	-	100	88.372	ENSDNOG00000043426	POLR2G	100	88.372	Dasypus_novemcinctus
ENSCSAVG00000002667	-	100	59.302	ENSDORG00000015696	-	100	59.302	Dipodomys_ordii
ENSCSAVG00000002667	-	100	84.884	ENSDORG00000010351	-	100	84.884	Dipodomys_ordii
ENSCSAVG00000002667	-	100	76.744	FBgn0051155	Rpb7	99	76.744	Drosophila_melanogaster
ENSCSAVG00000002667	-	100	73.256	ENSETEG00000019637	POLR2G	100	73.256	Echinops_telfairi
ENSCSAVG00000002667	-	100	86.628	ENSEBUG00000000439	-	86	86.628	Eptatretus_burgeri
ENSCSAVG00000002667	-	100	88.372	ENSEASG00005011357	POLR2G	100	88.372	Equus_asinus_asinus
ENSCSAVG00000002667	-	98	89.349	ENSECAG00000021465	POLR2G	87	89.349	Equus_caballus
ENSCSAVG00000002667	-	100	61.047	ENSEEUG00000007416	POLR2G	100	61.047	Erinaceus_europaeus
ENSCSAVG00000002667	-	100	88.372	ENSELUG00000003401	polr2g	100	88.372	Esox_lucius
ENSCSAVG00000002667	-	100	88.372	ENSFCAG00000026072	POLR2G	62	88.372	Felis_catus
ENSCSAVG00000002667	-	100	88.372	ENSFDAG00000020977	POLR2G	100	88.372	Fukomys_damarensis
ENSCSAVG00000002667	-	100	87.791	ENSFHEG00000003053	polr2gl	100	87.791	Fundulus_heteroclitus
ENSCSAVG00000002667	-	95	89.024	ENSGMOG00000000535	polr2gl	100	89.024	Gadus_morhua
ENSCSAVG00000002667	-	95	87.805	ENSGAFG00000001773	polr2gl	98	87.805	Gambusia_affinis
ENSCSAVG00000002667	-	100	88.372	ENSGACG00000017706	polr2gl	100	88.372	Gasterosteus_aculeatus
ENSCSAVG00000002667	-	98	88.095	ENSGAGG00000001303	POLR2G	100	88.095	Gopherus_agassizii
ENSCSAVG00000002667	-	100	88.372	ENSGGOG00000011739	POLR2G	100	88.372	Gorilla_gorilla
ENSCSAVG00000002667	-	99	87.135	ENSHBUG00000011421	polr2gl	94	87.135	Haplochromis_burtoni
ENSCSAVG00000002667	-	100	88.372	ENSHGLG00000004851	POLR2G	100	88.372	Heterocephalus_glaber_female
ENSCSAVG00000002667	-	100	83.140	ENSHGLG00100018441	POLR2G	100	83.140	Heterocephalus_glaber_male
ENSCSAVG00000002667	-	100	88.372	ENSHCOG00000009499	polr2gl	91	88.372	Hippocampus_comes
ENSCSAVG00000002667	-	100	87.791	ENSIPUG00000000671	polr2g	100	87.791	Ictalurus_punctatus
ENSCSAVG00000002667	-	100	87.209	ENSSTOG00000004391	POLR2G	100	87.209	Ictidomys_tridecemlineatus
ENSCSAVG00000002667	-	100	88.372	ENSJJAG00000005019	Polr2g	100	88.372	Jaculus_jaculus
ENSCSAVG00000002667	-	98	89.349	ENSKMAG00000011056	polr2gl	89	89.349	Kryptolebias_marmoratus
ENSCSAVG00000002667	-	100	88.372	ENSLBEG00000001458	polr2gl	100	88.372	Labrus_bergylta
ENSCSAVG00000002667	-	100	87.791	ENSLACG00000006420	POLR2G	100	87.791	Latimeria_chalumnae
ENSCSAVG00000002667	-	100	88.372	ENSLAFG00000004354	POLR2G	100	88.372	Loxodonta_africana
ENSCSAVG00000002667	-	100	88.372	ENSMFAG00000033674	POLR2G	100	88.372	Macaca_fascicularis
ENSCSAVG00000002667	-	100	88.372	ENSMMUG00000014368	POLR2G	100	88.372	Macaca_mulatta
ENSCSAVG00000002667	-	100	88.372	ENSMNEG00000041523	POLR2G	100	88.372	Macaca_nemestrina
ENSCSAVG00000002667	-	100	88.372	ENSMLEG00000032928	POLR2G	100	88.372	Mandrillus_leucophaeus
ENSCSAVG00000002667	-	95	88.415	ENSMAMG00000001188	polr2gl	100	88.415	Mastacembelus_armatus
ENSCSAVG00000002667	-	100	88.953	ENSMZEG00005003618	polr2gl	100	88.953	Maylandia_zebra
ENSCSAVG00000002667	-	55	90.426	ENSMAUG00000013079	Polr2g	100	90.426	Mesocricetus_auratus
ENSCSAVG00000002667	-	100	88.372	ENSMICG00000009967	POLR2G	100	88.372	Microcebus_murinus
ENSCSAVG00000002667	-	98	85.119	ENSMOCG00000010638	Polr2g	97	85.119	Microtus_ochrogaster
ENSCSAVG00000002667	-	98	89.349	ENSMMOG00000003102	polr2gl	93	89.349	Mola_mola
ENSCSAVG00000002667	-	98	89.349	ENSMODG00000007984	POLR2G	98	89.349	Monodelphis_domestica
ENSCSAVG00000002667	-	100	88.372	ENSMALG00000013385	polr2gl	100	88.372	Monopterus_albus
ENSCSAVG00000002667	-	100	88.372	MGP_CAROLIEiJ_G0022653	Polr2g	100	88.372	Mus_caroli
ENSCSAVG00000002667	-	100	88.372	ENSMUSG00000071662	Polr2g	100	88.372	Mus_musculus
ENSCSAVG00000002667	-	100	88.372	MGP_PahariEiJ_G0014148	Polr2g	100	88.372	Mus_pahari
ENSCSAVG00000002667	-	100	88.372	MGP_SPRETEiJ_G0023566	Polr2g	100	88.372	Mus_spretus
ENSCSAVG00000002667	-	100	88.372	ENSMPUG00000013667	POLR2G	100	88.372	Mustela_putorius_furo
ENSCSAVG00000002667	-	100	88.372	ENSMLUG00000011039	-	100	88.372	Myotis_lucifugus
ENSCSAVG00000002667	-	100	87.791	ENSMLUG00000003971	-	100	87.791	Myotis_lucifugus
ENSCSAVG00000002667	-	100	88.372	ENSNGAG00000020624	Polr2g	100	88.372	Nannospalax_galili
ENSCSAVG00000002667	-	94	86.420	ENSNBRG00000003949	polr2gl	100	86.420	Neolamprologus_brichardi
ENSCSAVG00000002667	-	98	70.414	ENSNLEG00000004097	-	91	70.414	Nomascus_leucogenys
ENSCSAVG00000002667	-	98	89.286	ENSMEUG00000011547	POLR2G	100	89.286	Notamacropus_eugenii
ENSCSAVG00000002667	-	100	73.256	ENSOPRG00000014769	POLR2G	100	73.256	Ochotona_princeps
ENSCSAVG00000002667	-	100	88.372	ENSODEG00000002048	-	100	88.372	Octodon_degus
ENSCSAVG00000002667	-	91	79.487	ENSODEG00000018495	-	100	79.487	Octodon_degus
ENSCSAVG00000002667	-	100	63.372	ENSODEG00000005609	-	100	63.372	Octodon_degus
ENSCSAVG00000002667	-	100	88.372	ENSONIG00000005183	polr2gl	100	88.372	Oreochromis_niloticus
ENSCSAVG00000002667	-	100	88.372	ENSOANG00000005808	POLR2G	100	88.372	Ornithorhynchus_anatinus
ENSCSAVG00000002667	-	100	88.372	ENSOCUG00000009485	POLR2G	100	88.372	Oryctolagus_cuniculus
ENSCSAVG00000002667	-	100	88.372	ENSORLG00000003154	polr2gl	100	88.372	Oryzias_latipes
ENSCSAVG00000002667	-	98	87.574	ENSORLG00020017682	polr2gl	99	87.574	Oryzias_latipes_hni
ENSCSAVG00000002667	-	100	88.372	ENSORLG00015018537	polr2gl	100	88.372	Oryzias_latipes_hsok
ENSCSAVG00000002667	-	100	88.372	ENSOMEG00000020086	polr2gl	100	88.372	Oryzias_melastigma
ENSCSAVG00000002667	-	100	73.295	ENSOGAG00000032720	POLR2G	100	73.295	Otolemur_garnettii
ENSCSAVG00000002667	-	98	87.059	ENSOARG00000016984	POLR2G	81	87.059	Ovis_aries
ENSCSAVG00000002667	-	100	88.372	ENSPPAG00000039868	POLR2G	100	88.372	Pan_paniscus
ENSCSAVG00000002667	-	100	88.372	ENSPPRG00000005669	POLR2G	100	88.372	Panthera_pardus
ENSCSAVG00000002667	-	100	84.000	ENSPTIG00000015781	POLR2G	100	84.000	Panthera_tigris_altaica
ENSCSAVG00000002667	-	100	88.372	ENSPANG00000025888	POLR2G	100	88.372	Papio_anubis
ENSCSAVG00000002667	-	99	88.304	ENSPKIG00000000902	polr2gl	90	87.574	Paramormyrops_kingsleyae
ENSCSAVG00000002667	-	100	88.372	ENSPSIG00000004285	POLR2G	82	88.372	Pelodiscus_sinensis
ENSCSAVG00000002667	-	100	88.372	ENSPMGG00000008462	polr2gl	100	88.372	Periophthalmus_magnuspinnatus
ENSCSAVG00000002667	-	100	88.372	ENSPEMG00000000685	Polr2g	100	88.372	Peromyscus_maniculatus_bairdii
ENSCSAVG00000002667	-	100	88.372	ENSPCIG00000015245	-	100	88.372	Phascolarctos_cinereus
ENSCSAVG00000002667	-	55	89.474	ENSPFOG00000024274	polr2gl	87	89.474	Poecilia_formosa
ENSCSAVG00000002667	-	98	88.757	ENSPLAG00000022848	polr2gl	95	88.757	Poecilia_latipinna
ENSCSAVG00000002667	-	100	87.791	ENSPMEG00000009317	polr2gl	100	87.791	Poecilia_mexicana
ENSCSAVG00000002667	-	100	87.791	ENSPREG00000016633	polr2gl	100	87.791	Poecilia_reticulata
ENSCSAVG00000002667	-	100	78.857	ENSPPYG00000003147	POLR2G	100	78.857	Pongo_abelii
ENSCSAVG00000002667	-	100	88.372	ENSPCAG00000016408	POLR2G	100	88.372	Procavia_capensis
ENSCSAVG00000002667	-	100	88.372	ENSPCOG00000024131	POLR2G	100	88.372	Propithecus_coquereli
ENSCSAVG00000002667	-	100	87.791	ENSPVAG00000003481	POLR2G	100	87.791	Pteropus_vampyrus
ENSCSAVG00000002667	-	100	88.953	ENSPNYG00000016136	polr2gl	100	88.953	Pundamilia_nyererei
ENSCSAVG00000002667	-	100	88.372	ENSPNAG00000025210	polr2gl	100	88.372	Pygocentrus_nattereri
ENSCSAVG00000002667	-	100	88.372	ENSRNOG00000019439	Polr2g	100	88.372	Rattus_norvegicus
ENSCSAVG00000002667	-	100	88.372	ENSRBIG00000009173	POLR2G	100	88.372	Rhinopithecus_bieti
ENSCSAVG00000002667	-	98	87.574	ENSRROG00000033543	POLR2G	74	81.507	Rhinopithecus_roxellana
ENSCSAVG00000002667	-	99	42.775	YDR404C	RPB7	100	42.775	Saccharomyces_cerevisiae
ENSCSAVG00000002667	-	100	88.372	ENSSBOG00000015220	POLR2G	100	88.372	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002667	-	100	88.372	ENSSHAG00000006006	POLR2G	100	88.372	Sarcophilus_harrisii
ENSCSAVG00000002667	-	100	88.372	ENSSFOG00015001245	polr2g	100	88.372	Scleropages_formosus
ENSCSAVG00000002667	-	100	88.372	ENSSMAG00000001197	polr2gl	100	88.372	Scophthalmus_maximus
ENSCSAVG00000002667	-	100	88.372	ENSSDUG00000015179	polr2gl	100	88.372	Seriola_dumerili
ENSCSAVG00000002667	-	100	88.372	ENSSLDG00000001822	polr2gl	100	88.372	Seriola_lalandi_dorsalis
ENSCSAVG00000002667	-	100	88.372	ENSSPUG00000008614	POLR2G	100	88.372	Sphenodon_punctatus
ENSCSAVG00000002667	-	98	89.349	ENSSPAG00000015276	polr2gl	99	89.349	Stegastes_partitus
ENSCSAVG00000002667	-	100	88.372	ENSSSCG00000025571	POLR2G	100	88.372	Sus_scrofa
ENSCSAVG00000002667	-	77	87.218	ENSTGUG00000014456	POLR2G	100	87.218	Taeniopygia_guttata
ENSCSAVG00000002667	-	100	88.372	ENSTRUG00000002492	polr2gl	100	88.372	Takifugu_rubripes
ENSCSAVG00000002667	-	100	71.512	ENSTBEG00000015752	POLR2G	100	71.512	Tupaia_belangeri
ENSCSAVG00000002667	-	100	88.372	ENSTTRG00000002478	POLR2G	100	88.372	Tursiops_truncatus
ENSCSAVG00000002667	-	100	88.372	ENSUAMG00000025968	POLR2G	100	88.372	Ursus_americanus
ENSCSAVG00000002667	-	65	90.991	ENSUMAG00000014537	POLR2G	66	90.991	Ursus_maritimus
ENSCSAVG00000002667	-	76	83.077	ENSVPAG00000009534	POLR2G	100	83.077	Vicugna_pacos
ENSCSAVG00000002667	-	100	88.372	ENSVVUG00000029844	POLR2G	100	88.372	Vulpes_vulpes
ENSCSAVG00000002667	-	100	87.791	ENSXETG00000006022	polr2g	100	87.791	Xenopus_tropicalis
ENSCSAVG00000002667	-	98	88.757	ENSXCOG00000002005	polr2gl	93	88.757	Xiphophorus_couchianus
ENSCSAVG00000002667	-	98	88.757	ENSXMAG00000010063	polr2gl	93	88.757	Xiphophorus_maculatus