EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000002857 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 18431 bases
Position: chrreftig_37:624176-642606
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000004793	ResIII	PF04851.15	8.8e-07	1	1
ENSCSAVP00000004793	DEAD	PF00270.29	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000004862	-	970	-	ENSCSAVP00000004794	188 (aa)	-	H2YHJ5
ENSCSAVT00000004863	-	793	-	ENSCSAVP00000004795	264 (aa)	-	H2YHJ6
ENSCSAVT00000004861	-	2505	-	ENSCSAVP00000004793	770 (aa)	-	H2YHJ4

Gene Model

Click here to download ENSCSAVG00000002857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000002857's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000002857	-	61	34.177	ENSCSAVG00000007529	-	70	34.177
ENSCSAVG00000002857	-	65	41.584	ENSCSAVG00000004620	-	54	41.584

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000002857	-	100	37.453	ENSG00000116830	TTF2	71	65.686	Homo_sapiens
ENSCSAVG00000002857	-	100	39.975	ENSAPLG00000010324	-	69	40.226	Anas_platyrhynchos
ENSCSAVG00000002857	-	100	37.201	ENSANAG00000020654	TTF2	64	37.201	Aotus_nancymaae
ENSCSAVG00000002857	-	100	37.643	ENSBTAG00000015392	TTF2	64	37.643	Bos_taurus
ENSCSAVG00000002857	-	100	37.516	ENSCHIG00000020785	TTF2	61	37.516	Capra_hircus
ENSCSAVG00000002857	-	100	37.831	ENSCCAG00000032675	TTF2	64	37.831	Cebus_capucinus
ENSCSAVG00000002857	-	100	36.868	ENSCANG00000032079	TTF2	64	36.991	Colobus_angolensis_palliatus
ENSCSAVG00000002857	-	99	36.146	ENSDORG00000013781	Ttf2	63	36.421	Dipodomys_ordii
ENSCSAVG00000002857	-	98	36.146	FBgn0002542	lds	70	36.146	Drosophila_melanogaster
ENSCSAVG00000002857	-	100	37.722	ENSECAG00000012474	TTF2	64	37.722	Equus_caballus
ENSCSAVG00000002857	-	100	37.918	ENSFCAG00000001981	TTF2	65	37.918	Felis_catus
ENSCSAVG00000002857	-	74	39.145	ENSGALG00000015249	-	58	39.803	Gallus_gallus
ENSCSAVG00000002857	-	100	37.610	ENSGAFG00000004358	TTF2	68	38.317	Gambusia_affinis
ENSCSAVG00000002857	-	100	37.624	ENSGGOG00000015790	TTF2	64	37.748	Gorilla_gorilla
ENSCSAVG00000002857	-	100	38.053	ENSJJAG00000015225	Ttf2	65	38.053	Jaculus_jaculus
ENSCSAVG00000002857	-	100	35.741	ENSMNEG00000042285	TTF2	63	35.696	Macaca_nemestrina
ENSCSAVG00000002857	-	100	37.262	ENSMLEG00000041549	TTF2	64	37.215	Mandrillus_leucophaeus
ENSCSAVG00000002857	-	100	38.903	ENSMGAG00000014354	TTF2	65	38.903	Meleagris_gallopavo
ENSCSAVG00000002857	-	99	38.284	ENSMOCG00000008415	Ttf2	66	38.284	Microtus_ochrogaster
ENSCSAVG00000002857	-	100	40.102	ENSMODG00000005145	TTF2	63	40.230	Monodelphis_domestica
ENSCSAVG00000002857	-	99	37.733	ENSMALG00000017262	TTF2	69	38.356	Monopterus_albus
ENSCSAVG00000002857	-	100	37.372	MGP_CAROLIEiJ_G0025427	Ttf2	65	37.372	Mus_caroli
ENSCSAVG00000002857	-	100	37.452	ENSMUSG00000033222	Ttf2	65	37.452	Mus_musculus
ENSCSAVG00000002857	-	100	37.612	MGP_PahariEiJ_G0026871	Ttf2	65	37.612	Mus_pahari
ENSCSAVG00000002857	-	100	37.230	MGP_SPRETEiJ_G0026377	Ttf2	65	37.230	Mus_spretus
ENSCSAVG00000002857	-	100	38.653	ENSMLUG00000013908	TTF2	64	38.653	Myotis_lucifugus
ENSCSAVG00000002857	-	100	37.992	ENSNGAG00000018882	Ttf2	65	37.992	Nannospalax_galili
ENSCSAVG00000002857	-	76	79.630	ENSNBRG00000011914	TTF2	62	38.859	Neolamprologus_brichardi
ENSCSAVG00000002857	-	100	37.032	ENSNLEG00000005209	TTF2	64	37.032	Nomascus_leucogenys
ENSCSAVG00000002857	-	100	38.742	ENSOCUG00000000613	TTF2	64	38.994	Oryctolagus_cuniculus
ENSCSAVG00000002857	-	100	38.365	ENSOGAG00000009039	TTF2	64	38.365	Otolemur_garnettii
ENSCSAVG00000002857	-	100	36.902	ENSOARG00000020266	TTF2	64	36.902	Ovis_aries
ENSCSAVG00000002857	-	100	37.328	ENSPPAG00000027542	TTF2	64	37.328	Pan_paniscus
ENSCSAVG00000002857	-	100	36.887	ENSPTRG00000001162	TTF2	64	37.010	Pan_troglodytes
ENSCSAVG00000002857	-	99	38.012	ENSPSIG00000005266	TTF2	96	38.012	Pelodiscus_sinensis
ENSCSAVG00000002857	-	70	39.474	ENSPCIG00000003483	TTF2	51	40.000	Phascolarctos_cinereus
ENSCSAVG00000002857	-	100	34.275	ENSPPYG00000000976	TTF2	63	34.275	Pongo_abelii
ENSCSAVG00000002857	-	100	38.131	ENSPCOG00000000551	TTF2	64	38.131	Propithecus_coquereli
ENSCSAVG00000002857	-	100	38.306	ENSPVAG00000014881	TTF2	65	38.306	Pteropus_vampyrus
ENSCSAVG00000002857	-	100	37.157	ENSRBIG00000042651	TTF2	64	37.157	Rhinopithecus_bieti
ENSCSAVG00000002857	-	100	37.079	ENSRROG00000013287	TTF2	64	37.079	Rhinopithecus_roxellana
ENSCSAVG00000002857	-	100	37.374	ENSSBOG00000022555	TTF2	64	37.753	Saimiri_boliviensis_boliviensis
ENSCSAVG00000002857	-	100	38.964	ENSSHAG00000018195	TTF2	66	39.196	Sarcophilus_harrisii
ENSCSAVG00000002857	-	100	38.119	ENSSMAG00000007532	TTF2	67	38.882	Scophthalmus_maximus
ENSCSAVG00000002857	-	100	39.330	ENSSDUG00000013617	TTF2	67	39.259	Seriola_dumerili
ENSCSAVG00000002857	-	100	35.533	ENSSARG00000007562	TTF2	65	35.533	Sorex_araneus
ENSCSAVG00000002857	-	100	38.119	ENSSSCG00000006733	TTF2	67	38.490	Sus_scrofa
ENSCSAVG00000002857	-	70	38.750	ENSTRUG00000015592	-	51	39.683	Takifugu_rubripes
ENSCSAVG00000002857	-	100	39.201	ENSTNIG00000015679	-	68	39.114	Tetraodon_nigroviridis
ENSCSAVG00000002857	-	100	33.799	ENSTTRG00000012884	TTF2	64	33.799	Tursiops_truncatus
ENSCSAVG00000002857	-	67	39.560	ENSXETG00000022003	-	61	39.560	Xenopus_tropicalis