EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003045 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 5426 bases
Position: chrreftig_46:88210-93635
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005097	ResIII	PF04851.15	8.7e-07	1	1
ENSCSAVP00000005096	ResIII	PF04851.15	8.8e-07	1	1
ENSCSAVP00000005096	DEAD	PF00270.29	3e-33	1	1
ENSCSAVP00000005097	DEAD	PF00270.29	3.1e-33	1	1
ENSCSAVP00000005098	DEAD	PF00270.29	3.2e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005167	-	1203	-	ENSCSAVP00000005096	401 (aa)	-	H2YIE7
ENSCSAVT00000005168	-	1218	-	ENSCSAVP00000005097	406 (aa)	-	H2YIE8
ENSCSAVT00000005169	-	1041	-	ENSCSAVP00000005098	347 (aa)	-	H2YIE9

Gene Model

Click here to download ENSCSAVG00000003045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003045	-	89	30.573	ENSCSAVG00000008916	-	100	30.422
ENSCSAVG00000003045	-	81	30.293	ENSCSAVG00000004158	-	61	31.104
ENSCSAVG00000003045	-	92	31.217	ENSCSAVG00000009116	-	79	31.217
ENSCSAVG00000003045	-	96	36.418	ENSCSAVG00000000630	-	99	36.170
ENSCSAVG00000003045	-	96	34.132	ENSCSAVG00000009920	-	99	34.146
ENSCSAVG00000003045	-	87	30.194	ENSCSAVG00000003023	-	63	30.194
ENSCSAVG00000003045	-	97	32.948	ENSCSAVG00000002162	-	93	32.581
ENSCSAVG00000003045	-	95	30.539	ENSCSAVG00000000522	-	87	31.183

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003045	-	100	59.366	ENSG00000064703	DDX20	67	58.696	Homo_sapiens
ENSCSAVG00000003045	-	98	62.374	ENSACIG00000013095	ddx20	50	62.374	Amphilophus_citrinellus
ENSCSAVG00000003045	-	98	60.652	ENSAOCG00000013474	DDX20	50	60.652	Amphiprion_ocellaris
ENSCSAVG00000003045	-	98	61.616	ENSATEG00000002941	ddx20	50	61.616	Anabas_testudineus
ENSCSAVG00000003045	-	97	60.560	ENSACAG00000006235	DDX20	52	60.560	Anolis_carolinensis
ENSCSAVG00000003045	-	98	61.947	ENSACLG00000009485	ddx20	50	61.869	Astatotilapia_calliptera
ENSCSAVG00000003045	-	96	59.487	ENSCAFG00020008055	DDX20	92	60.656	Canis_lupus_dingo
ENSCSAVG00000003045	-	96	60.778	ENSCPBG00000021256	DDX20	50	59.288	Chrysemys_picta_bellii
ENSCSAVG00000003045	-	97	61.675	ENSCVAG00000014821	ddx20	51	61.675	Cyprinodon_variegatus
ENSCSAVG00000003045	-	98	60.848	ENSDARG00000061204	ddx20	51	60.848	Danio_rerio
ENSCSAVG00000003045	-	74	58.940	ENSEBUG00000004479	ddx20	96	58.940	Eptatretus_burgeri
ENSCSAVG00000003045	-	97	62.798	ENSELUG00000010260	ddx20	50	61.654	Esox_lucius
ENSCSAVG00000003045	-	98	61.209	ENSFHEG00000019742	ddx20	52	61.209	Fundulus_heteroclitus
ENSCSAVG00000003045	-	96	60.154	ENSGALG00000001504	DDX20	52	59.398	Gallus_gallus
ENSCSAVG00000003045	-	97	61.675	ENSGAFG00000006427	ddx20	52	61.675	Gambusia_affinis
ENSCSAVG00000003045	-	96	60.778	ENSGAGG00000000130	DDX20	51	58.603	Gopherus_agassizii
ENSCSAVG00000003045	-	98	61.947	ENSHBUG00000007853	ddx20	50	61.869	Haplochromis_burtoni
ENSCSAVG00000003045	-	98	61.364	ENSHCOG00000001915	ddx20	53	61.364	Hippocampus_comes
ENSCSAVG00000003045	-	98	61.364	ENSIPUG00000004876	ddx20	50	61.364	Ictalurus_punctatus
ENSCSAVG00000003045	-	98	60.652	ENSKMAG00000019022	ddx20	52	60.652	Kryptolebias_marmoratus
ENSCSAVG00000003045	-	98	61.364	ENSLBEG00000019194	ddx20	51	61.364	Labrus_bergylta
ENSCSAVG00000003045	-	100	61.364	ENSLOCG00000010372	ddx20	50	62.626	Lepisosteus_oculatus
ENSCSAVG00000003045	-	98	61.616	ENSMAMG00000009654	ddx20	50	61.616	Mastacembelus_armatus
ENSCSAVG00000003045	-	98	61.947	ENSMZEG00005027081	ddx20	50	61.869	Maylandia_zebra
ENSCSAVG00000003045	-	94	61.585	ENSMGAG00000004624	DDX20	50	61.436	Meleagris_gallopavo
ENSCSAVG00000003045	-	98	61.111	ENSMMOG00000013103	ddx20	53	61.111	Mola_mola
ENSCSAVG00000003045	-	98	61.947	ENSNBRG00000020244	ddx20	51	61.869	Neolamprologus_brichardi
ENSCSAVG00000003045	-	75	61.311	ENSODEG00000007653	-	90	61.311	Octodon_degus
ENSCSAVG00000003045	-	98	61.616	ENSONIG00000012436	ddx20	53	61.616	Oreochromis_niloticus
ENSCSAVG00000003045	-	96	62.462	ENSOANG00000003318	DDX20	53	62.611	Ornithorhynchus_anatinus
ENSCSAVG00000003045	-	98	61.111	ENSORLG00000008949	ddx20	53	61.111	Oryzias_latipes
ENSCSAVG00000003045	-	98	61.111	ENSORLG00020003852	ddx20	53	61.111	Oryzias_latipes_hni
ENSCSAVG00000003045	-	98	61.111	ENSORLG00015020167	ddx20	53	61.111	Oryzias_latipes_hsok
ENSCSAVG00000003045	-	98	61.111	ENSOMEG00000013657	ddx20	53	61.111	Oryzias_melastigma
ENSCSAVG00000003045	-	67	63.248	ENSPTIG00000021955	-	87	64.516	Panthera_tigris_altaica
ENSCSAVG00000003045	-	96	61.261	ENSPKIG00000020161	ddx20	51	61.622	Paramormyrops_kingsleyae
ENSCSAVG00000003045	-	98	61.461	ENSPMGG00000005966	ddx20	52	61.461	Periophthalmus_magnuspinnatus
ENSCSAVG00000003045	-	62	60.185	ENSPMAG00000009633	-	100	60.185	Petromyzon_marinus
ENSCSAVG00000003045	-	98	61.713	ENSPFOG00000010540	ddx20	51	61.713	Poecilia_formosa
ENSCSAVG00000003045	-	98	61.713	ENSPLAG00000009925	ddx20	51	61.713	Poecilia_latipinna
ENSCSAVG00000003045	-	98	61.965	ENSPMEG00000005998	ddx20	52	61.965	Poecilia_mexicana
ENSCSAVG00000003045	-	98	61.965	ENSPREG00000018837	ddx20	52	61.965	Poecilia_reticulata
ENSCSAVG00000003045	-	75	59.574	ENSPCAG00000007371	-	70	59.574	Procavia_capensis
ENSCSAVG00000003045	-	98	61.947	ENSPNYG00000014433	ddx20	50	61.869	Pundamilia_nyererei
ENSCSAVG00000003045	-	98	61.364	ENSPNAG00000018148	ddx20	50	61.364	Pygocentrus_nattereri
ENSCSAVG00000003045	-	98	61.616	ENSSFOG00015008354	ddx20	51	61.616	Scleropages_formosus
ENSCSAVG00000003045	-	98	61.111	ENSSDUG00000015980	ddx20	52	61.111	Seriola_dumerili
ENSCSAVG00000003045	-	95	59.585	ENSTGUG00000013660	DDX20	58	58.838	Taeniopygia_guttata
ENSCSAVG00000003045	-	99	60.848	ENSTRUG00000023712	ddx20	52	60.848	Takifugu_rubripes
ENSCSAVG00000003045	-	98	61.364	ENSTNIG00000019425	ddx20	52	61.364	Tetraodon_nigroviridis
ENSCSAVG00000003045	-	96	55.357	ENSUAMG00000018924	DDX20	55	58.007	Ursus_americanus
ENSCSAVG00000003045	-	96	60.961	ENSXETG00000013568	ddx20	52	59.847	Xenopus_tropicalis
ENSCSAVG00000003045	-	97	61.675	ENSXCOG00000007952	ddx20	51	61.675	Xiphophorus_couchianus
ENSCSAVG00000003045	-	97	61.675	ENSXMAG00000007573	ddx20	51	61.675	Xiphophorus_maculatus