EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003068 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4978 bases
Position: chrreftig_12:1232893-1237870
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005140	RIO1	PF01163.22	1.6e-67	1	1
ENSCSAVP00000005139	RIO1	PF01163.22	2.5e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005210	-	1755	-	ENSCSAVP00000005139	535 (aa)	-	H2YIJ0
ENSCSAVT00000005211	-	1662	-	ENSCSAVP00000005140	483 (aa)	-	H2YIJ1

Gene Model

Click here to download ENSCSAVG00000003068's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003068's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003068	-	100	51.844	ENSG00000101782	RIOK3	97	49.531	Homo_sapiens
ENSCSAVG00000003068	-	99	51.745	ENSAPOG00000020861	riok3	94	49.310	Acanthochromis_polyacanthus
ENSCSAVG00000003068	-	100	52.049	ENSAMEG00000013754	RIOK3	81	50.391	Ailuropoda_melanoleuca
ENSCSAVG00000003068	-	99	51.340	ENSACIG00000019894	riok3	95	48.141	Amphilophus_citrinellus
ENSCSAVG00000003068	-	99	51.540	ENSAOCG00000007172	riok3	96	50.000	Amphiprion_ocellaris
ENSCSAVG00000003068	-	99	51.335	ENSAPEG00000002536	riok3	96	49.174	Amphiprion_percula
ENSCSAVG00000003068	-	99	51.646	ENSATEG00000018303	riok3	96	48.723	Anabas_testudineus
ENSCSAVG00000003068	-	100	53.074	ENSAPLG00000006497	RIOK3	97	49.331	Anas_platyrhynchos
ENSCSAVG00000003068	-	100	52.469	ENSACAG00000000159	RIOK3	95	49.516	Anolis_carolinensis
ENSCSAVG00000003068	-	65	56.467	ENSANAG00000030146	RIOK3	71	56.467	Aotus_nancymaae
ENSCSAVG00000003068	-	99	51.646	ENSACLG00000018966	riok3	95	50.920	Astatotilapia_calliptera
ENSCSAVG00000003068	-	99	49.170	ENSAMXG00000015617	riok3	94	47.610	Astyanax_mexicanus
ENSCSAVG00000003068	-	100	52.254	ENSBTAG00000010042	RIOK3	97	49.906	Bos_taurus
ENSCSAVG00000003068	-	94	35.684	WBGene00014012	riok-3	89	34.669	Caenorhabditis_elegans
ENSCSAVG00000003068	-	100	51.844	ENSCJAG00000020556	RIOK3	97	49.343	Callithrix_jacchus
ENSCSAVG00000003068	-	100	52.254	ENSCAFG00000018201	RIOK3	91	51.745	Canis_familiaris
ENSCSAVG00000003068	-	100	52.371	ENSCAFG00020014801	RIOK3	99	52.927	Canis_lupus_dingo
ENSCSAVG00000003068	-	100	51.844	ENSCHIG00000009312	RIOK3	97	49.343	Capra_hircus
ENSCSAVG00000003068	-	100	52.459	ENSTSYG00000000142	RIOK3	98	51.059	Carlito_syrichta
ENSCSAVG00000003068	-	93	53.070	ENSCAPG00000005756	RIOK3	90	52.527	Cavia_aperea
ENSCSAVG00000003068	-	100	52.323	ENSCPOG00000007991	RIOK3	95	50.192	Cavia_porcellus
ENSCSAVG00000003068	-	100	51.844	ENSCCAG00000028338	RIOK3	97	49.620	Cebus_capucinus
ENSCSAVG00000003068	-	100	51.844	ENSCATG00000040824	RIOK3	94	52.778	Cercocebus_atys
ENSCSAVG00000003068	-	100	52.236	ENSCLAG00000006767	RIOK3	95	50.194	Chinchilla_lanigera
ENSCSAVG00000003068	-	100	51.639	ENSCSAG00000017680	RIOK3	97	49.156	Chlorocebus_sabaeus
ENSCSAVG00000003068	-	87	57.485	ENSCHOG00000008343	RIOK3	84	57.059	Choloepus_hoffmanni
ENSCSAVG00000003068	-	99	52.371	ENSCPBG00000027226	RIOK3	97	48.218	Chrysemys_picta_bellii
ENSCSAVG00000003068	-	81	48.866	ENSCANG00000035939	RIOK3	91	48.101	Colobus_angolensis_palliatus
ENSCSAVG00000003068	-	100	52.459	ENSCGRG00001013249	Riok3	97	49.343	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003068	-	100	52.049	ENSCGRG00000017636	Riok3	97	48.968	Cricetulus_griseus_crigri
ENSCSAVG00000003068	-	99	51.016	ENSCSEG00000018289	riok3	96	50.104	Cynoglossus_semilaevis
ENSCSAVG00000003068	-	99	50.412	ENSCVAG00000011848	riok3	92	50.412	Cyprinodon_variegatus
ENSCSAVG00000003068	-	99	50.920	ENSDARG00000042751	riok3	94	48.527	Danio_rerio
ENSCSAVG00000003068	-	100	51.639	ENSDNOG00000039433	RIOK3	91	51.129	Dasypus_novemcinctus
ENSCSAVG00000003068	-	100	52.459	ENSDORG00000011663	Riok3	95	50.781	Dipodomys_ordii
ENSCSAVG00000003068	-	88	42.792	FBgn0031643	CG3008	70	43.349	Drosophila_melanogaster
ENSCSAVG00000003068	-	95	52.473	ENSETEG00000003689	RIOK3	96	51.224	Echinops_telfairi
ENSCSAVG00000003068	-	99	44.421	ENSEBUG00000000555	riok3	92	44.421	Eptatretus_burgeri
ENSCSAVG00000003068	-	100	52.254	ENSEASG00005002317	RIOK3	92	51.745	Equus_asinus_asinus
ENSCSAVG00000003068	-	100	52.049	ENSECAG00000009028	RIOK3	92	51.540	Equus_caballus
ENSCSAVG00000003068	-	100	43.238	ENSEEUG00000007005	RIOK3	95	42.710	Erinaceus_europaeus
ENSCSAVG00000003068	-	99	51.553	ENSELUG00000017655	riok3	91	50.932	Esox_lucius
ENSCSAVG00000003068	-	100	52.254	ENSFCAG00000000517	RIOK3	97	49.906	Felis_catus
ENSCSAVG00000003068	-	100	52.990	ENSFALG00000006145	RIOK3	94	50.292	Ficedula_albicollis
ENSCSAVG00000003068	-	99	51.745	ENSFDAG00000001548	RIOK3	91	51.324	Fukomys_damarensis
ENSCSAVG00000003068	-	99	48.971	ENSFHEG00000011350	riok3	94	46.548	Fundulus_heteroclitus
ENSCSAVG00000003068	-	92	51.678	ENSGMOG00000005157	riok3	93	51.339	Gadus_morhua
ENSCSAVG00000003068	-	100	53.402	ENSGALG00000015004	RIOK3	94	50.977	Gallus_gallus
ENSCSAVG00000003068	-	95	44.161	ENSGAFG00000002403	riok3	88	40.519	Gambusia_affinis
ENSCSAVG00000003068	-	99	49.184	ENSGACG00000000880	riok3	96	45.607	Gasterosteus_aculeatus
ENSCSAVG00000003068	-	99	52.479	ENSGAGG00000024785	RIOK3	96	48.375	Gopherus_agassizii
ENSCSAVG00000003068	-	57	58.845	ENSGGOG00000036734	-	89	58.845	Gorilla_gorilla
ENSCSAVG00000003068	-	99	51.646	ENSHBUG00000003233	riok3	92	50.920	Haplochromis_burtoni
ENSCSAVG00000003068	-	100	52.439	ENSHGLG00000003885	RIOK3	95	50.194	Heterocephalus_glaber_female
ENSCSAVG00000003068	-	100	52.439	ENSHGLG00100002077	RIOK3	95	50.194	Heterocephalus_glaber_male
ENSCSAVG00000003068	-	99	51.134	ENSHCOG00000006794	riok3	93	49.109	Hippocampus_comes
ENSCSAVG00000003068	-	99	50.725	ENSIPUG00000001406	Riok3	94	49.008	Ictalurus_punctatus
ENSCSAVG00000003068	-	100	52.254	ENSSTOG00000006517	RIOK3	97	49.343	Ictidomys_tridecemlineatus
ENSCSAVG00000003068	-	100	52.254	ENSJJAG00000023689	Riok3	97	49.718	Jaculus_jaculus
ENSCSAVG00000003068	-	99	50.207	ENSKMAG00000007259	riok3	92	50.207	Kryptolebias_marmoratus
ENSCSAVG00000003068	-	99	50.513	ENSLBEG00000013689	riok3	92	49.692	Labrus_bergylta
ENSCSAVG00000003068	-	99	51.446	ENSLACG00000017326	RIOK3	97	47.801	Latimeria_chalumnae
ENSCSAVG00000003068	-	99	51.860	ENSLOCG00000001652	riok3	96	49.326	Lepisosteus_oculatus
ENSCSAVG00000003068	-	100	51.125	ENSLAFG00000001380	RIOK3	91	50.615	Loxodonta_africana
ENSCSAVG00000003068	-	100	51.844	ENSMMUG00000021478	RIOK3	94	52.778	Macaca_mulatta
ENSCSAVG00000003068	-	89	48.456	ENSMNEG00000041106	RIOK3	96	48.317	Macaca_nemestrina
ENSCSAVG00000003068	-	100	51.844	ENSMLEG00000028187	RIOK3	94	52.778	Mandrillus_leucophaeus
ENSCSAVG00000003068	-	99	50.412	ENSMAMG00000008502	riok3	94	47.826	Mastacembelus_armatus
ENSCSAVG00000003068	-	99	51.646	ENSMZEG00005020212	riok3	92	50.920	Maylandia_zebra
ENSCSAVG00000003068	-	100	53.799	ENSMGAG00000010079	RIOK3	91	53.593	Meleagris_gallopavo
ENSCSAVG00000003068	-	100	51.844	ENSMAUG00000020527	Riok3	97	48.968	Mesocricetus_auratus
ENSCSAVG00000003068	-	100	52.342	ENSMICG00000009293	RIOK3	97	49.813	Microcebus_murinus
ENSCSAVG00000003068	-	99	50.719	ENSMOCG00000012114	Riok3	94	47.842	Microtus_ochrogaster
ENSCSAVG00000003068	-	99	48.081	ENSMMOG00000019204	riok3	95	47.273	Mola_mola
ENSCSAVG00000003068	-	100	50.920	ENSMODG00000021496	RIOK3	96	48.771	Monodelphis_domestica
ENSCSAVG00000003068	-	99	50.513	ENSMALG00000020848	riok3	93	49.487	Monopterus_albus
ENSCSAVG00000003068	-	100	51.434	MGP_CAROLIEiJ_G0022001	Riok3	97	49.343	Mus_caroli
ENSCSAVG00000003068	-	100	51.639	ENSMUSG00000024404	Riok3	95	82.759	Mus_musculus
ENSCSAVG00000003068	-	100	51.639	MGP_PahariEiJ_G0018739	Riok3	97	49.343	Mus_pahari
ENSCSAVG00000003068	-	100	52.138	ENSMPUG00000005772	RIOK3	95	50.874	Mustela_putorius_furo
ENSCSAVG00000003068	-	100	51.844	ENSMLUG00000007081	RIOK3	97	49.156	Myotis_lucifugus
ENSCSAVG00000003068	-	100	51.844	ENSNGAG00000011446	Riok3	91	51.335	Nannospalax_galili
ENSCSAVG00000003068	-	79	56.897	ENSNBRG00000016677	riok3	81	56.897	Neolamprologus_brichardi
ENSCSAVG00000003068	-	100	51.639	ENSNLEG00000006758	RIOK3	97	49.156	Nomascus_leucogenys
ENSCSAVG00000003068	-	100	51.125	ENSMEUG00000006292	RIOK3	95	49.612	Notamacropus_eugenii
ENSCSAVG00000003068	-	100	51.738	ENSOPRG00000004803	RIOK3	97	49.438	Ochotona_princeps
ENSCSAVG00000003068	-	100	51.423	ENSODEG00000006444	RIOK3	95	49.612	Octodon_degus
ENSCSAVG00000003068	-	99	50.820	ENSONIG00000013422	riok3	98	48.235	Oreochromis_niloticus
ENSCSAVG00000003068	-	100	50.615	ENSOANG00000012074	RIOK3	96	50.103	Ornithorhynchus_anatinus
ENSCSAVG00000003068	-	100	52.254	ENSOCUG00000016820	RIOK3	97	49.719	Oryctolagus_cuniculus
ENSCSAVG00000003068	-	99	51.346	ENSORLG00000003395	riok3	94	48.323	Oryzias_latipes
ENSCSAVG00000003068	-	99	51.346	ENSORLG00020000672	riok3	94	48.323	Oryzias_latipes_hni
ENSCSAVG00000003068	-	99	51.346	ENSORLG00015007372	riok3	94	48.323	Oryzias_latipes_hsok
ENSCSAVG00000003068	-	99	51.446	ENSOMEG00000001380	riok3	94	48.810	Oryzias_melastigma
ENSCSAVG00000003068	-	100	52.254	ENSOGAG00000014502	RIOK3	87	49.719	Otolemur_garnettii
ENSCSAVG00000003068	-	100	52.049	ENSOARG00000008042	RIOK3	97	49.531	Ovis_aries
ENSCSAVG00000003068	-	100	51.844	ENSPPAG00000030258	RIOK3	97	49.531	Pan_paniscus
ENSCSAVG00000003068	-	100	52.254	ENSPPRG00000023302	RIOK3	97	49.719	Panthera_pardus
ENSCSAVG00000003068	-	100	52.254	ENSPTIG00000000960	RIOK3	97	49.719	Panthera_tigris_altaica
ENSCSAVG00000003068	-	100	52.049	ENSPTRG00000009918	RIOK3	97	49.719	Pan_troglodytes
ENSCSAVG00000003068	-	100	51.844	ENSPANG00000011485	RIOK3	94	52.778	Papio_anubis
ENSCSAVG00000003068	-	100	51.553	ENSPKIG00000018297	riok3	94	49.802	Paramormyrops_kingsleyae
ENSCSAVG00000003068	-	100	53.484	ENSPSIG00000006250	RIOK3	96	50.290	Pelodiscus_sinensis
ENSCSAVG00000003068	-	99	50.207	ENSPMGG00000009414	riok3	97	48.671	Periophthalmus_magnuspinnatus
ENSCSAVG00000003068	-	100	51.844	ENSPEMG00000023794	Riok3	97	49.531	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003068	-	92	52.928	ENSPMAG00000003258	riok3	98	51.327	Petromyzon_marinus
ENSCSAVG00000003068	-	99	51.240	ENSPCIG00000013991	RIOK3	98	50.615	Phascolarctos_cinereus
ENSCSAVG00000003068	-	99	49.588	ENSPFOG00000024127	riok3	95	47.059	Poecilia_formosa
ENSCSAVG00000003068	-	99	49.691	ENSPLAG00000004956	riok3	95	47.151	Poecilia_latipinna
ENSCSAVG00000003068	-	99	49.691	ENSPMEG00000020108	riok3	95	48.465	Poecilia_mexicana
ENSCSAVG00000003068	-	99	49.691	ENSPREG00000010010	riok3	94	47.525	Poecilia_reticulata
ENSCSAVG00000003068	-	100	47.131	ENSPPYG00000009062	RIOK3	97	45.028	Pongo_abelii
ENSCSAVG00000003068	-	76	51.327	ENSPCAG00000001021	RIOK3	69	50.862	Procavia_capensis
ENSCSAVG00000003068	-	100	52.546	ENSPCOG00000022631	RIOK3	97	50.000	Propithecus_coquereli
ENSCSAVG00000003068	-	100	41.260	ENSPVAG00000015817	RIOK3	91	41.344	Pteropus_vampyrus
ENSCSAVG00000003068	-	99	51.646	ENSPNYG00000003271	riok3	92	50.920	Pundamilia_nyererei
ENSCSAVG00000003068	-	99	51.033	ENSPNAG00000006213	riok3	92	51.033	Pygocentrus_nattereri
ENSCSAVG00000003068	-	100	51.844	ENSRNOG00000023376	Riok3	97	49.343	Rattus_norvegicus
ENSCSAVG00000003068	-	100	51.639	ENSRBIG00000035071	RIOK3	94	52.778	Rhinopithecus_bieti
ENSCSAVG00000003068	-	100	52.049	ENSRROG00000045710	RIOK3	94	52.778	Rhinopithecus_roxellana
ENSCSAVG00000003068	-	100	51.844	ENSSBOG00000034387	RIOK3	97	49.343	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003068	-	100	51.125	ENSSHAG00000011854	RIOK3	95	49.419	Sarcophilus_harrisii
ENSCSAVG00000003068	-	99	51.553	ENSSFOG00015012912	riok3	95	49.112	Scleropages_formosus
ENSCSAVG00000003068	-	99	51.440	ENSSMAG00000011527	riok3	94	49.012	Scophthalmus_maximus
ENSCSAVG00000003068	-	99	51.335	ENSSDUG00000016018	riok3	94	48.915	Seriola_dumerili
ENSCSAVG00000003068	-	65	61.429	ENSSLDG00000022246	riok3	90	59.740	Seriola_lalandi_dorsalis
ENSCSAVG00000003068	-	87	48.193	ENSSARG00000010154	RIOK3	78	48.193	Sorex_araneus
ENSCSAVG00000003068	-	99	52.990	ENSSPUG00000015246	RIOK3	94	50.000	Sphenodon_punctatus
ENSCSAVG00000003068	-	99	51.540	ENSSPAG00000000601	riok3	94	48.627	Stegastes_partitus
ENSCSAVG00000003068	-	100	51.844	ENSSSCG00000029518	RIOK3	96	56.725	Sus_scrofa
ENSCSAVG00000003068	-	100	53.074	ENSTGUG00000010392	RIOK3	94	50.682	Taeniopygia_guttata
ENSCSAVG00000003068	-	99	51.335	ENSTRUG00000007055	riok3	94	48.622	Takifugu_rubripes
ENSCSAVG00000003068	-	99	49.281	ENSTNIG00000001855	riok3	96	48.460	Tetraodon_nigroviridis
ENSCSAVG00000003068	-	100	52.352	ENSTTRG00000008839	RIOK3	97	49.813	Tursiops_truncatus
ENSCSAVG00000003068	-	100	52.049	ENSUAMG00000018410	RIOK3	95	50.391	Ursus_americanus
ENSCSAVG00000003068	-	100	52.049	ENSUMAG00000020218	RIOK3	94	50.391	Ursus_maritimus
ENSCSAVG00000003068	-	100	52.147	ENSVPAG00000009034	RIOK3	97	49.625	Vicugna_pacos
ENSCSAVG00000003068	-	100	52.254	ENSVVUG00000003651	RIOK3	69	51.951	Vulpes_vulpes
ENSCSAVG00000003068	-	100	52.990	ENSXETG00000027370	riok3	97	48.030	Xenopus_tropicalis
ENSCSAVG00000003068	-	99	48.247	ENSXCOG00000001032	riok3	97	46.063	Xiphophorus_couchianus
ENSCSAVG00000003068	-	99	49.072	ENSXMAG00000012902	riok3	94	46.654	Xiphophorus_maculatus