EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000003102 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
12248 bases
Position
chrreftig_283:275384-287631
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000005204PABPPF00658.187.5e-3111
ENSCSAVP00000005206PABPPF00658.188.6e-3111
ENSCSAVP00000005205PABPPF00658.189.2e-3111
ENSCSAVP00000005200PABPPF00658.189.9e-3111
ENSCSAVP00000005202PABPPF00658.181.1e-3011
ENSCSAVP00000005201PABPPF00658.181.1e-3011
ENSCSAVP00000005205RRM_5PF13893.62.1e-1312
ENSCSAVP00000005205RRM_5PF13893.62.1e-1322
ENSCSAVP00000005206RRM_5PF13893.67.4e-1312
ENSCSAVP00000005206RRM_5PF13893.67.4e-1322
ENSCSAVP00000005201RRM_5PF13893.68.1e-1312
ENSCSAVP00000005201RRM_5PF13893.68.1e-1322
ENSCSAVP00000005200RRM_5PF13893.61.1e-1212
ENSCSAVP00000005200RRM_5PF13893.61.1e-1222
ENSCSAVP00000005202RRM_5PF13893.61.3e-1212
ENSCSAVP00000005202RRM_5PF13893.61.3e-1222
ENSCSAVP00000005204RRM_5PF13893.62.3e-1212
ENSCSAVP00000005204RRM_5PF13893.62.3e-1222
ENSCSAVP00000005207RRM_5PF13893.61.9e-0912
ENSCSAVP00000005207RRM_5PF13893.61.9e-0922
ENSCSAVP00000005201RRM_1PF00076.223.2e-8014
ENSCSAVP00000005201RRM_1PF00076.223.2e-8024
ENSCSAVP00000005201RRM_1PF00076.223.2e-8034
ENSCSAVP00000005201RRM_1PF00076.223.2e-8044
ENSCSAVP00000005204RRM_1PF00076.225.8e-8014
ENSCSAVP00000005204RRM_1PF00076.225.8e-8024
ENSCSAVP00000005204RRM_1PF00076.225.8e-8034
ENSCSAVP00000005204RRM_1PF00076.225.8e-8044
ENSCSAVP00000005200RRM_1PF00076.221.4e-7914
ENSCSAVP00000005200RRM_1PF00076.221.4e-7924
ENSCSAVP00000005200RRM_1PF00076.221.4e-7934
ENSCSAVP00000005200RRM_1PF00076.221.4e-7944
ENSCSAVP00000005202RRM_1PF00076.221.5e-7914
ENSCSAVP00000005202RRM_1PF00076.221.5e-7924
ENSCSAVP00000005202RRM_1PF00076.221.5e-7934
ENSCSAVP00000005202RRM_1PF00076.221.5e-7944
ENSCSAVP00000005206RRM_1PF00076.223.1e-7914
ENSCSAVP00000005206RRM_1PF00076.223.1e-7924
ENSCSAVP00000005206RRM_1PF00076.223.1e-7934
ENSCSAVP00000005206RRM_1PF00076.223.1e-7944
ENSCSAVP00000005205RRM_1PF00076.228.3e-7814
ENSCSAVP00000005205RRM_1PF00076.228.3e-7824
ENSCSAVP00000005205RRM_1PF00076.228.3e-7834
ENSCSAVP00000005205RRM_1PF00076.228.3e-7844
ENSCSAVP00000005207RRM_1PF00076.229.9e-4112
ENSCSAVP00000005207RRM_1PF00076.229.9e-4122
ENSCSAVP00000005203RRM_1PF00076.225.2e-3812
ENSCSAVP00000005203RRM_1PF00076.225.2e-3822
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000005271-1945-ENSCSAVP00000005200647 (aa)-H2YIQ1
ENSCSAVT00000005272-1890-ENSCSAVP00000005201630 (aa)-H2YIQ2
ENSCSAVT00000005273-2011-ENSCSAVP00000005202662 (aa)-H2YIQ3
ENSCSAVT00000005274-449-ENSCSAVP00000005203149 (aa)-H2YIQ4
ENSCSAVT00000005275-1815-ENSCSAVP00000005204603 (aa)-H2YIQ5
ENSCSAVT00000005276-1764-ENSCSAVP00000005205588 (aa)-H2YIQ6
ENSCSAVT00000005277-1680-ENSCSAVP00000005206560 (aa)-H2YIQ7
ENSCSAVT00000005278-1176-ENSCSAVP00000005207248 (aa)-H2YIQ8
Gene Model
Click here to download ENSCSAVG00000003102's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003102's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000003102-9941.667ENSCSAVG00000007809-8137.419
ENSCSAVG00000003102-10097.315ENSCSAVG00000004246-9797.203
ENSCSAVG00000003102-7130.939ENSCSAVG00000011781-9730.055
ENSCSAVG00000003102-9230.216ENSCSAVG00000003440-9936.585
ENSCSAVG00000003102-9932.667ENSCSAVG00000009321-7632.468
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000003102-10081.507ENSG00000101104PABPC1L9581.507Homo_sapiens
ENSCSAVG00000003102-10083.221ENSAPOG00000010842pabpc1l9956.082Acanthochromis_polyacanthus
ENSCSAVG00000003102-10080.822ENSAMEG00000004099PABPC1L9954.574Ailuropoda_melanoleuca
ENSCSAVG00000003102-10085.714ENSACIG00000021004-9872.222Amphilophus_citrinellus
ENSCSAVG00000003102-10082.550ENSAOCG00000006167-9861.556Amphiprion_ocellaris
ENSCSAVG00000003102-10082.550ENSAPEG00000010558-9973.333Amphiprion_percula
ENSCSAVG00000003102-10083.893ENSATEG00000007428pabpc1l9956.542Anabas_testudineus
ENSCSAVG00000003102-10080.537ENSAPLG00000008415PABPC1L9955.418Anas_platyrhynchos
ENSCSAVG00000003102-10085.616ENSACAG00000011841PABPC1L9857.298Anolis_carolinensis
ENSCSAVG00000003102-10080.137ENSANAG00000026826PABPC1L9856.318Aotus_nancymaae
ENSCSAVG00000003102-10085.714ENSACLG00000024791pabpc1l9957.585Astatotilapia_calliptera
ENSCSAVG00000003102-10082.550ENSAMXG00000013552pabpc1l9958.268Astyanax_mexicanus
ENSCSAVG00000003102-9059.898ENSBTAG00000016849PABPC1L8248.718Bos_taurus
ENSCSAVG00000003102-10080.537ENSBTAG00000055300-10077.326Bos_taurus
ENSCSAVG00000003102-10080.137ENSCJAG00000017628PABPC1L9856.318Callithrix_jacchus
ENSCSAVG00000003102-10078.289ENSCJAG00000038506-10074.157Callithrix_jacchus
ENSCSAVG00000003102-10081.507ENSCAFG00000009573PABPC1L9967.016Canis_familiaris
ENSCSAVG00000003102-10081.507ENSCAFG00020013828PABPC1L9757.025Canis_lupus_dingo
ENSCSAVG00000003102-10082.192ENSCHIG00000025759PABPC1L9057.358Capra_hircus
ENSCSAVG00000003102-10082.877ENSTSYG00000006645PABPC1L9855.796Carlito_syrichta
ENSCSAVG00000003102-10075.294ENSCAPG00000014519PABPC1L9853.585Cavia_aperea
ENSCSAVG00000003102-10078.767ENSCPOG00000013633PABPC1L9755.519Cavia_porcellus
ENSCSAVG00000003102-10080.137ENSCCAG00000023338PABPC1L9855.850Cebus_capucinus
ENSCSAVG00000003102-10081.507ENSCATG00000034065PABPC1L9757.500Cercocebus_atys
ENSCSAVG00000003102-10079.452ENSCLAG00000005298PABPC1L9754.950Chinchilla_lanigera
ENSCSAVG00000003102-10081.507ENSCSAG00000014242PABPC1L9757.500Chlorocebus_sabaeus
ENSCSAVG00000003102-10083.221ENSCPBG00000017755-9962.584Chrysemys_picta_bellii
ENSCSAVG00000003102-7386.239ENSCPBG00000007810-8582.927Chrysemys_picta_bellii
ENSCSAVG00000003102-9981.443ENSCING00000002796-9875.099Ciona_intestinalis
ENSCSAVG00000003102-10081.507ENSCANG00000037530PABPC1L9854.961Colobus_angolensis_palliatus
ENSCSAVG00000003102-10077.397ENSCGRG00001021938Pabpc1l9954.591Cricetulus_griseus_chok1gshd
ENSCSAVG00000003102-10077.397ENSCGRG00000007946Pabpc1l9954.591Cricetulus_griseus_crigri
ENSCSAVG00000003102-10083.893ENSCSEG00000021295pabpc1l9760.036Cynoglossus_semilaevis
ENSCSAVG00000003102-10083.221ENSCVAG00000015943-9977.273Cyprinodon_variegatus
ENSCSAVG00000003102-10085.034ENSDARG00000002597pabpc1l9084.091Danio_rerio
ENSCSAVG00000003102-10082.877ENSDNOG00000048450PABPC1L9758.696Dasypus_novemcinctus
ENSCSAVG00000003102-10080.822ENSDORG00000001067Pabpc1l9755.907Dipodomys_ordii
ENSCSAVG00000003102-9881.507ENSETEG00000009969PABPC1L6869.262Echinops_telfairi
ENSCSAVG00000003102-9059.509ENSEASG00005023407-8348.018Equus_asinus_asinus
ENSCSAVG00000003102-10079.195ENSEASG00005023408-10078.481Equus_asinus_asinus
ENSCSAVG00000003102-9856.109ENSECAG00000040139-8551.822Equus_caballus
ENSCSAVG00000003102-10080.137ENSEEUG00000005978PABPC1L9856.667Erinaceus_europaeus
ENSCSAVG00000003102-10083.221ENSELUG00000001811pabpc1l9476.087Esox_lucius
ENSCSAVG00000003102-10080.822ENSFCAG00000011692PABPC1L9757.763Felis_catus
ENSCSAVG00000003102-10082.550ENSFALG00000005372PABPC1L9949.599Ficedula_albicollis
ENSCSAVG00000003102-10078.767ENSFDAG00000008291PABPC1L9757.216Fukomys_damarensis
ENSCSAVG00000003102-10085.034ENSFHEG00000003398pabpc1l9957.278Fundulus_heteroclitus
ENSCSAVG00000003102-10082.550ENSGMOG00000004437pabpc1l9857.911Gadus_morhua
ENSCSAVG00000003102-10081.879ENSGALG00000004123PABPC1L9872.727Gallus_gallus
ENSCSAVG00000003102-10083.893ENSGAFG00000021057pabpc1l9953.858Gambusia_affinis
ENSCSAVG00000003102-10083.221ENSGACG00000002792pabpc1l9956.740Gasterosteus_aculeatus
ENSCSAVG00000003102-10083.221ENSGAGG00000000589PABPC1L9764.133Gopherus_agassizii
ENSCSAVG00000003102-10081.507ENSGGOG00000004584PABPC1L9757.333Gorilla_gorilla
ENSCSAVG00000003102-10085.714ENSHBUG00000006134pabpc1l9964.608Haplochromis_burtoni
ENSCSAVG00000003102-10078.767ENSHGLG00000008434PABPC1L9756.073Heterocephalus_glaber_female
ENSCSAVG00000003102-10078.767ENSHGLG00100012151PABPC1L9756.073Heterocephalus_glaber_male
ENSCSAVG00000003102-10085.906ENSHGLG00100019506-9880.791Heterocephalus_glaber_male
ENSCSAVG00000003102-10081.879ENSHCOG00000009270pabpc1l9668.365Hippocampus_comes
ENSCSAVG00000003102-9959.459ENSIPUG00000006780-9555.866Ictalurus_punctatus
ENSCSAVG00000003102-9959.459ENSIPUG00000006760-9156.044Ictalurus_punctatus
ENSCSAVG00000003102-8161.983ENSIPUG00000005537-9959.690Ictalurus_punctatus
ENSCSAVG00000003102-10083.221ENSIPUG00000012602pabpc1l9960.613Ictalurus_punctatus
ENSCSAVG00000003102-10080.137ENSSTOG00000003739PABPC1L9757.737Ictidomys_tridecemlineatus
ENSCSAVG00000003102-9954.000ENSJJAG00000022406Pabpc1l9743.522Jaculus_jaculus
ENSCSAVG00000003102-10083.893ENSKMAG00000016847pabpc1l9957.030Kryptolebias_marmoratus
ENSCSAVG00000003102-10083.221ENSLBEG00000010084pabpc1l9957.803Labrus_bergylta
ENSCSAVG00000003102-10084.564ENSLACG00000005762PABPC1L9763.927Latimeria_chalumnae
ENSCSAVG00000003102-10083.893ENSLOCG00000007519pabpc1l9859.370Lepisosteus_oculatus
ENSCSAVG00000003102-10080.822ENSLAFG00000003553PABPC1L8470.213Loxodonta_africana
ENSCSAVG00000003102-10081.507ENSMFAG00000040365PABPC1L9757.333Macaca_fascicularis
ENSCSAVG00000003102-10081.507ENSMNEG00000032298PABPC1L9855.363Macaca_nemestrina
ENSCSAVG00000003102-10081.507ENSMLEG00000043139PABPC1L9757.500Mandrillus_leucophaeus
ENSCSAVG00000003102-10083.221ENSMAMG00000011854pabpc1l9756.250Mastacembelus_armatus
ENSCSAVG00000003102-10085.714ENSMZEG00005023713pabpc1l9957.585Maylandia_zebra
ENSCSAVG00000003102-10082.550ENSMGAG00000003674PABPC1L9957.704Meleagris_gallopavo
ENSCSAVG00000003102-10077.397ENSMOCG00000013186Pabpc1l9954.333Microtus_ochrogaster
ENSCSAVG00000003102-10081.879ENSMMOG00000020574-9183.333Mola_mola
ENSCSAVG00000003102-10083.562ENSMODG00000016198PABPC1L9858.362Monodelphis_domestica
ENSCSAVG00000003102-10081.879ENSMALG00000021622pabpc1l10056.752Monopterus_albus
ENSCSAVG00000003102-10076.712MGP_CAROLIEiJ_G0024627Pabpc1l9855.041Mus_caroli
ENSCSAVG00000003102-10076.712ENSMUSG00000054582Pabpc1l9953.438Mus_musculus
ENSCSAVG00000003102-10076.712MGP_PahariEiJ_G0026071Pabpc1l9855.207Mus_pahari
ENSCSAVG00000003102-10076.712MGP_SPRETEiJ_G0025549Pabpc1l9953.281Mus_spretus
ENSCSAVG00000003102-10080.822ENSMPUG00000017646PABPC1L8475.294Mustela_putorius_furo
ENSCSAVG00000003102-10080.822ENSMLUG00000006324PABPC1L9852.519Myotis_lucifugus
ENSCSAVG00000003102-10078.082ENSNGAG00000010458Pabpc1l9755.034Nannospalax_galili
ENSCSAVG00000003102-10085.714ENSNBRG00000016633pabpc1l9967.327Neolamprologus_brichardi
ENSCSAVG00000003102-10083.562ENSMEUG00000007905-8276.667Notamacropus_eugenii
ENSCSAVG00000003102-10081.507ENSOPRG00000011846PABPC1L9756.572Ochotona_princeps
ENSCSAVG00000003102-10079.195ENSODEG00000002920-9576.101Octodon_degus
ENSCSAVG00000003102-10078.767ENSODEG00000015482PABPC1L9654.336Octodon_degus
ENSCSAVG00000003102-10085.714ENSONIG00000017314pabpc1l9862.243Oreochromis_niloticus
ENSCSAVG00000003102-10082.192ENSOANG00000015793-10049.826Ornithorhynchus_anatinus
ENSCSAVG00000003102-10080.822ENSOCUG00000003005PABPC1L9855.818Oryctolagus_cuniculus
ENSCSAVG00000003102-10084.733ENSORLG00000010322pabpc1l9977.215Oryzias_latipes
ENSCSAVG00000003102-10084.733ENSORLG00020021193pabpc1l9977.215Oryzias_latipes_hni
ENSCSAVG00000003102-10084.733ENSORLG00015017018pabpc1l9977.215Oryzias_latipes_hsok
ENSCSAVG00000003102-10085.034ENSOMEG00000010789pabpc1l9954.751Oryzias_melastigma
ENSCSAVG00000003102-10080.822ENSOGAG00000032999PABPC1L9955.178Otolemur_garnettii
ENSCSAVG00000003102-10081.507ENSOARG00000004578PABPC1L9856.808Ovis_aries
ENSCSAVG00000003102-10081.507ENSPPAG00000039677PABPC1L9856.786Pan_paniscus
ENSCSAVG00000003102-9880.822ENSPPRG00000019327-8480.822Panthera_pardus
ENSCSAVG00000003102-10080.822ENSPTIG00000006524PABPC1L9857.973Panthera_tigris_altaica
ENSCSAVG00000003102-9881.507ENSPTRG00000013531PABPC1L9581.507Pan_troglodytes
ENSCSAVG00000003102-10081.507ENSPANG00000018788PABPC1L8476.471Papio_anubis
ENSCSAVG00000003102-8187.603ENSPKIG00000016810-9384.211Paramormyrops_kingsleyae
ENSCSAVG00000003102-10082.550ENSPKIG00000007322pabpc1l9958.202Paramormyrops_kingsleyae
ENSCSAVG00000003102-10083.221ENSPSIG00000013289PABPC1L8283.221Pelodiscus_sinensis
ENSCSAVG00000003102-9852.105ENSPMGG00000023121-9252.736Periophthalmus_magnuspinnatus
ENSCSAVG00000003102-10083.221ENSPMGG00000023117pabpc1l9984.211Periophthalmus_magnuspinnatus
ENSCSAVG00000003102-10077.397ENSPEMG00000020671Pabpc1l9854.315Peromyscus_maniculatus_bairdii
ENSCSAVG00000003102-10083.893ENSPFOG00000013241pabpc1l9956.434Poecilia_formosa
ENSCSAVG00000003102-8186.777ENSPLAG00000023686-9384.328Poecilia_latipinna
ENSCSAVG00000003102-10085.034ENSPLAG00000017490-9863.063Poecilia_latipinna
ENSCSAVG00000003102-10083.893ENSPMEG00000007677pabpc1l9957.323Poecilia_mexicana
ENSCSAVG00000003102-8186.777ENSPMEG00000009185-8984.328Poecilia_mexicana
ENSCSAVG00000003102-10085.034ENSPREG00000015886pabpc1l8385.034Poecilia_reticulata
ENSCSAVG00000003102-10081.507ENSPPYG00000011042PABPC1L9757.333Pongo_abelii
ENSCSAVG00000003102-7383.636ENSPCAG00000011787-7283.636Procavia_capensis
ENSCSAVG00000003102-10080.822ENSPCOG00000020630PABPC1L9957.500Propithecus_coquereli
ENSCSAVG00000003102-10081.507ENSPVAG00000012663PABPC1L9954.777Pteropus_vampyrus
ENSCSAVG00000003102-10085.714ENSPNYG00000004101pabpc1l9876.190Pundamilia_nyererei
ENSCSAVG00000003102-10082.550ENSPNAG00000021248pabpc1l10053.416Pygocentrus_nattereri
ENSCSAVG00000003102-10076.712ENSRNOG00000012750Pabpc1l9754.395Rattus_norvegicus
ENSCSAVG00000003102-10080.822ENSRBIG00000035381PABPC1L9757.333Rhinopithecus_bieti
ENSCSAVG00000003102-10080.822ENSRROG00000044498PABPC1L9757.167Rhinopithecus_roxellana
ENSCSAVG00000003102-10080.822ENSSBOG00000009532-9856.318Saimiri_boliviensis_boliviensis
ENSCSAVG00000003102-9966.667ENSSHAG00000011446PABPC1L9951.844Sarcophilus_harrisii
ENSCSAVG00000003102-10084.564ENSSFOG00015017304pabpc1l9959.874Scleropages_formosus
ENSCSAVG00000003102-10082.550ENSSMAG00000010516pabpc1l9384.733Scophthalmus_maximus
ENSCSAVG00000003102-10082.550ENSSDUG00000014743pabpc1l9957.460Seriola_dumerili
ENSCSAVG00000003102-10082.550ENSSLDG00000006981pabpc1l9374.057Seriola_lalandi_dorsalis
ENSCSAVG00000003102-10082.993ENSSPUG00000004233PABPC1L9661.224Sphenodon_punctatus
ENSCSAVG00000003102-10083.221ENSSPAG00000017137pabpc1l9571.591Stegastes_partitus
ENSCSAVG00000003102-10080.822ENSSSCG00000007382PABPC1L9956.467Sus_scrofa
ENSCSAVG00000003102-10083.893ENSTGUG00000005114PABPC1L9956.502Taeniopygia_guttata
ENSCSAVG00000003102-10084.564ENSTRUG00000011085pabpc1l9757.005Takifugu_rubripes
ENSCSAVG00000003102-10076.000ENSTNIG00000017903pabpc1l9855.660Tetraodon_nigroviridis
ENSCSAVG00000003102-9881.507ENSTBEG00000002851PABPC1L7766.783Tupaia_belangeri
ENSCSAVG00000003102-10080.822ENSTTRG00000007618PABPC1L10055.360Tursiops_truncatus
ENSCSAVG00000003102-10080.822ENSUAMG00000017682PABPC1L9758.276Ursus_americanus
ENSCSAVG00000003102-10074.227ENSUMAG00000025436PABPC1L9060.784Ursus_maritimus
ENSCSAVG00000003102-10083.871ENSVVUG00000018939PABPC1L9861.089Vulpes_vulpes
ENSCSAVG00000003102-10081.879ENSXETG00000022831pabpc1l9854.518Xenopus_tropicalis
ENSCSAVG00000003102-10083.893ENSXCOG00000005459pabpc1l9981.818Xiphophorus_couchianus
ENSCSAVG00000003102-10083.893ENSXMAG00000017135pabpc1l9568.889Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us