EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003107 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 3813 bases
Position: chrreftig_382:908467-912279
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005216	IF-2B	PF01008.17	9e-81	1	1
ENSCSAVP00000005214	IF-2B	PF01008.17	3.2e-80	1	1
ENSCSAVP00000005217	IF-2B	PF01008.17	1.5e-79	1	1
ENSCSAVP00000005215	IF-2B	PF01008.17	1.6e-74	1	1
ENSCSAVP00000005218	IF-2B	PF01008.17	2.7e-66	1	2
ENSCSAVP00000005218	IF-2B	PF01008.17	2.7e-66	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005289	-	894	-	ENSCSAVP00000005218	298 (aa)	-	H2YIR9
ENSCSAVT00000005288	-	1050	-	ENSCSAVP00000005217	350 (aa)	-	H2YIR8
ENSCSAVT00000005285	-	1113	-	ENSCSAVP00000005214	371 (aa)	-	H2YIR5
ENSCSAVT00000005287	-	1104	-	ENSCSAVP00000005216	368 (aa)	-	H2YIR7
ENSCSAVT00000005286	-	1149	-	ENSCSAVP00000005215	382 (aa)	-	H2YIR6

Gene Model

Click here to download ENSCSAVG00000003107's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003107's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003107	-	99	56.857	ENSG00000037757	MRI1	95	57.429	Homo_sapiens
ENSCSAVG00000003107	-	99	61.095	ENSAPOG00000009673	mri1	97	61.095	Acanthochromis_polyacanthus
ENSCSAVG00000003107	-	99	54.391	ENSAMEG00000012918	MRI1	98	54.674	Ailuropoda_melanoleuca
ENSCSAVG00000003107	-	99	61.095	ENSACIG00000009199	mri1	97	61.095	Amphilophus_citrinellus
ENSCSAVG00000003107	-	99	61.095	ENSAOCG00000009931	mri1	97	61.095	Amphiprion_ocellaris
ENSCSAVG00000003107	-	99	61.095	ENSAPEG00000013553	mri1	97	61.095	Amphiprion_percula
ENSCSAVG00000003107	-	99	61.960	ENSATEG00000019410	mri1	97	61.960	Anabas_testudineus
ENSCSAVG00000003107	-	98	58.333	ENSACAG00000003475	MRI1	97	58.333	Anolis_carolinensis
ENSCSAVG00000003107	-	98	52.149	ENSANAG00000035382	-	96	51.862	Aotus_nancymaae
ENSCSAVG00000003107	-	98	57.880	ENSANAG00000020896	-	95	57.880	Aotus_nancymaae
ENSCSAVG00000003107	-	99	61.383	ENSACLG00000020412	mri1	97	61.383	Astatotilapia_calliptera
ENSCSAVG00000003107	-	99	61.272	ENSAMXG00000011982	mri1	97	61.272	Astyanax_mexicanus
ENSCSAVG00000003107	-	99	56.857	ENSBTAG00000002524	MRI1	89	57.429	Bos_taurus
ENSCSAVG00000003107	-	98	43.188	WBGene00007236	C01G10.9	97	42.466	Caenorhabditis_elegans
ENSCSAVG00000003107	-	99	56.857	ENSCJAG00000044187	MRI1	94	56.857	Callithrix_jacchus
ENSCSAVG00000003107	-	99	57.714	ENSCAFG00000016615	MRI1	98	57.714	Canis_familiaris
ENSCSAVG00000003107	-	99	57.714	ENSCAFG00020006659	MRI1	98	57.714	Canis_lupus_dingo
ENSCSAVG00000003107	-	99	56.286	ENSCHIG00000019343	MRI1	96	56.857	Capra_hircus
ENSCSAVG00000003107	-	63	56.696	ENSTSYG00000034486	MRI1	91	56.696	Carlito_syrichta
ENSCSAVG00000003107	-	63	60.889	ENSCAPG00000015487	MRI1	95	61.333	Cavia_aperea
ENSCSAVG00000003107	-	98	57.307	ENSCPOG00000013191	MRI1	96	57.307	Cavia_porcellus
ENSCSAVG00000003107	-	98	57.020	ENSCCAG00000014292	-	93	57.020	Cebus_capucinus
ENSCSAVG00000003107	-	98	51.585	ENSCCAG00000035484	-	96	51.585	Cebus_capucinus
ENSCSAVG00000003107	-	98	46.418	ENSCATG00000029747	MRI1	94	46.857	Cercocebus_atys
ENSCSAVG00000003107	-	98	56.447	ENSCLAG00000013025	MRI1	96	56.447	Chinchilla_lanigera
ENSCSAVG00000003107	-	98	56.338	ENSCSAG00000006463	MRI1	95	56.742	Chlorocebus_sabaeus
ENSCSAVG00000003107	-	55	64.103	ENSCING00000000162	-	99	64.103	Ciona_intestinalis
ENSCSAVG00000003107	-	87	56.169	ENSCANG00000043216	MRI1	93	53.488	Colobus_angolensis_palliatus
ENSCSAVG00000003107	-	98	57.020	ENSCGRG00001015655	MRI1	95	57.020	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003107	-	98	57.020	ENSCGRG00000005697	MRI1	95	57.020	Cricetulus_griseus_crigri
ENSCSAVG00000003107	-	98	62.139	ENSCSEG00000011410	mri1	97	62.139	Cynoglossus_semilaevis
ENSCSAVG00000003107	-	98	61.850	ENSCVAG00000023215	mri1	97	61.850	Cyprinodon_variegatus
ENSCSAVG00000003107	-	99	61.095	ENSDARG00000075754	mri1	97	61.095	Danio_rerio
ENSCSAVG00000003107	-	98	55.172	ENSDNOG00000047045	MRI1	97	55.587	Dasypus_novemcinctus
ENSCSAVG00000003107	-	98	57.307	ENSDORG00000010875	Mri1	96	57.307	Dipodomys_ordii
ENSCSAVG00000003107	-	99	54.622	FBgn0039849	CG11334	98	54.902	Drosophila_melanogaster
ENSCSAVG00000003107	-	88	54.140	ENSETEG00000017174	MRI1	99	54.459	Echinops_telfairi
ENSCSAVG00000003107	-	98	54.046	ENSEBUG00000014184	mri1	98	54.467	Eptatretus_burgeri
ENSCSAVG00000003107	-	99	56.286	ENSEASG00005000151	MRI1	98	56.286	Equus_asinus_asinus
ENSCSAVG00000003107	-	99	56.571	ENSECAG00000010706	MRI1	98	56.571	Equus_caballus
ENSCSAVG00000003107	-	100	55.901	ENSELUG00000016174	mri1	97	56.484	Esox_lucius
ENSCSAVG00000003107	-	98	50.505	ENSFCAG00000011508	MRI1	97	52.754	Felis_catus
ENSCSAVG00000003107	-	64	60.793	ENSFDAG00000017424	MRI1	88	61.233	Fukomys_damarensis
ENSCSAVG00000003107	-	99	61.383	ENSFHEG00000009358	MRI1	97	61.383	Fundulus_heteroclitus
ENSCSAVG00000003107	-	88	64.671	ENSGMOG00000002273	mri1	95	55.152	Gadus_morhua
ENSCSAVG00000003107	-	93	51.205	ENSGALG00000034575	MRI1	96	51.205	Gallus_gallus
ENSCSAVG00000003107	-	99	60.231	ENSGAFG00000010575	mri1	97	60.231	Gambusia_affinis
ENSCSAVG00000003107	-	94	60.909	ENSGACG00000018995	mri1	97	60.909	Gasterosteus_aculeatus
ENSCSAVG00000003107	-	99	60.286	ENSGAGG00000010411	MRI1	97	60.286	Gopherus_agassizii
ENSCSAVG00000003107	-	99	57.143	ENSGGOG00000006628	MRI1	95	57.714	Gorilla_gorilla
ENSCSAVG00000003107	-	99	61.383	ENSHBUG00000018620	mri1	97	61.383	Haplochromis_burtoni
ENSCSAVG00000003107	-	98	56.734	ENSHGLG00000010969	MRI1	96	56.734	Heterocephalus_glaber_female
ENSCSAVG00000003107	-	98	55.172	ENSHGLG00100007151	MRI1	97	55.172	Heterocephalus_glaber_male
ENSCSAVG00000003107	-	99	60.231	ENSHCOG00000014695	mri1	97	60.231	Hippocampus_comes
ENSCSAVG00000003107	-	99	61.850	ENSIPUG00000008756	mri1	97	61.850	Ictalurus_punctatus
ENSCSAVG00000003107	-	98	57.880	ENSSTOG00000020750	MRI1	96	57.880	Ictidomys_tridecemlineatus
ENSCSAVG00000003107	-	98	57.307	ENSJJAG00000018104	Mri1	95	57.307	Jaculus_jaculus
ENSCSAVG00000003107	-	99	61.095	ENSKMAG00000018700	mri1	97	61.095	Kryptolebias_marmoratus
ENSCSAVG00000003107	-	99	61.383	ENSLBEG00000004998	mri1	97	61.383	Labrus_bergylta
ENSCSAVG00000003107	-	100	61.190	ENSLACG00000006845	MRI1	99	61.190	Latimeria_chalumnae
ENSCSAVG00000003107	-	98	50.862	ENSLAFG00000012910	MRI1	97	50.862	Loxodonta_africana
ENSCSAVG00000003107	-	88	56.051	ENSMFAG00000044250	MRI1	99	56.688	Macaca_fascicularis
ENSCSAVG00000003107	-	98	57.020	ENSMMUG00000018068	MRI1	95	57.593	Macaca_mulatta
ENSCSAVG00000003107	-	99	56.857	ENSMNEG00000002628	MRI1	94	53.722	Macaca_nemestrina
ENSCSAVG00000003107	-	98	57.020	ENSMLEG00000035138	MRI1	95	57.429	Mandrillus_leucophaeus
ENSCSAVG00000003107	-	99	61.960	ENSMAMG00000011686	mri1	97	61.960	Mastacembelus_armatus
ENSCSAVG00000003107	-	99	61.383	ENSMZEG00005007657	mri1	97	61.383	Maylandia_zebra
ENSCSAVG00000003107	-	88	47.143	ENSMAUG00000003451	Mri1	86	54.902	Mesocricetus_auratus
ENSCSAVG00000003107	-	99	57.143	ENSMICG00000031875	MRI1	95	57.714	Microcebus_murinus
ENSCSAVG00000003107	-	99	55.714	ENSMOCG00000009591	Mri1	95	55.714	Microtus_ochrogaster
ENSCSAVG00000003107	-	99	60.807	ENSMMOG00000021373	mri1	67	60.807	Mola_mola
ENSCSAVG00000003107	-	99	55.143	ENSMODG00000011870	MRI1	99	55.429	Monodelphis_domestica
ENSCSAVG00000003107	-	99	61.383	ENSMALG00000006021	mri1	97	61.383	Monopterus_albus
ENSCSAVG00000003107	-	98	55.587	MGP_CAROLIEiJ_G0031299	Mri1	95	56.160	Mus_caroli
ENSCSAVG00000003107	-	98	55.874	ENSMUSG00000004996	Mri1	95	56.447	Mus_musculus
ENSCSAVG00000003107	-	99	55.429	MGP_PahariEiJ_G0022905	Mri1	95	56.000	Mus_pahari
ENSCSAVG00000003107	-	98	55.874	MGP_SPRETEiJ_G0032417	Mri1	95	56.447	Mus_spretus
ENSCSAVG00000003107	-	99	57.429	ENSMPUG00000003316	MRI1	98	58.000	Mustela_putorius_furo
ENSCSAVG00000003107	-	98	56.034	ENSMLUG00000004766	MRI1	97	56.609	Myotis_lucifugus
ENSCSAVG00000003107	-	98	57.020	ENSNGAG00000022102	Mri1	96	57.020	Nannospalax_galili
ENSCSAVG00000003107	-	99	54.046	ENSNBRG00000023766	mri1	97	54.046	Neolamprologus_brichardi
ENSCSAVG00000003107	-	99	56.857	ENSNLEG00000013138	MRI1	95	57.429	Nomascus_leucogenys
ENSCSAVG00000003107	-	82	63.889	ENSMEUG00000013717	MRI1	80	63.889	Notamacropus_eugenii
ENSCSAVG00000003107	-	59	62.085	ENSOPRG00000015475	-	98	62.085	Ochotona_princeps
ENSCSAVG00000003107	-	51	59.563	ENSOPRG00000008859	-	99	60.109	Ochotona_princeps
ENSCSAVG00000003107	-	99	56.091	ENSODEG00000010083	-	96	55.807	Octodon_degus
ENSCSAVG00000003107	-	98	56.447	ENSODEG00000019755	-	95	56.160	Octodon_degus
ENSCSAVG00000003107	-	99	61.383	ENSONIG00000017732	mri1	97	61.383	Oreochromis_niloticus
ENSCSAVG00000003107	-	87	59.091	ENSOANG00000012399	MRI1	95	59.091	Ornithorhynchus_anatinus
ENSCSAVG00000003107	-	99	56.571	ENSOCUG00000024840	MRI1	96	57.143	Oryctolagus_cuniculus
ENSCSAVG00000003107	-	99	60.807	ENSORLG00000011911	mri1	97	60.807	Oryzias_latipes
ENSCSAVG00000003107	-	99	60.807	ENSORLG00020005135	MRI1	97	60.807	Oryzias_latipes_hni
ENSCSAVG00000003107	-	99	60.807	ENSORLG00015003701	MRI1	97	60.807	Oryzias_latipes_hsok
ENSCSAVG00000003107	-	89	60.000	ENSOMEG00000013120	mri1	96	60.000	Oryzias_melastigma
ENSCSAVG00000003107	-	98	57.265	ENSOGAG00000007183	MRI1	96	57.265	Otolemur_garnettii
ENSCSAVG00000003107	-	99	50.712	ENSOARG00000008222	MRI1	95	50.712	Ovis_aries
ENSCSAVG00000003107	-	98	50.287	ENSPPAG00000033346	MRI1	94	50.287	Pan_paniscus
ENSCSAVG00000003107	-	98	56.447	ENSPPRG00000006539	MRI1	95	57.020	Panthera_pardus
ENSCSAVG00000003107	-	98	55.874	ENSPTIG00000005216	MRI1	97	56.447	Panthera_tigris_altaica
ENSCSAVG00000003107	-	98	57.307	ENSPTRG00000010563	MRI1	95	57.880	Pan_troglodytes
ENSCSAVG00000003107	-	98	57.307	ENSPANG00000010977	MRI1	95	57.714	Papio_anubis
ENSCSAVG00000003107	-	100	56.075	ENSPKIG00000003387	mri1	97	56.075	Paramormyrops_kingsleyae
ENSCSAVG00000003107	-	57	65.896	ENSPSIG00000004574	MRI1	90	65.896	Pelodiscus_sinensis
ENSCSAVG00000003107	-	99	60.519	ENSPMGG00000016429	mri1	97	60.519	Periophthalmus_magnuspinnatus
ENSCSAVG00000003107	-	99	56.000	ENSPEMG00000006105	Mri1	95	56.571	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003107	-	99	58.621	ENSPMAG00000006128	mri1	98	59.195	Petromyzon_marinus
ENSCSAVG00000003107	-	99	56.000	ENSPCIG00000019032	MRI1	98	56.286	Phascolarctos_cinereus
ENSCSAVG00000003107	-	99	60.807	ENSPFOG00000004311	mri1	97	60.807	Poecilia_formosa
ENSCSAVG00000003107	-	99	61.383	ENSPLAG00000010852	mri1	97	61.383	Poecilia_latipinna
ENSCSAVG00000003107	-	99	60.807	ENSPMEG00000014113	mri1	97	60.807	Poecilia_mexicana
ENSCSAVG00000003107	-	80	58.865	ENSPREG00000000422	mri1	81	58.865	Poecilia_reticulata
ENSCSAVG00000003107	-	98	56.897	ENSPPYG00000010570	MRI1	94	56.897	Pongo_abelii
ENSCSAVG00000003107	-	98	55.587	ENSPCAG00000014275	MRI1	96	55.587	Procavia_capensis
ENSCSAVG00000003107	-	86	57.516	ENSPCOG00000021500	MRI1	94	57.843	Propithecus_coquereli
ENSCSAVG00000003107	-	98	56.897	ENSPVAG00000006322	MRI1	95	56.897	Pteropus_vampyrus
ENSCSAVG00000003107	-	99	61.383	ENSPNYG00000001542	mri1	97	61.383	Pundamilia_nyererei
ENSCSAVG00000003107	-	99	60.983	ENSPNAG00000012506	mri1	97	60.983	Pygocentrus_nattereri
ENSCSAVG00000003107	-	98	55.301	ENSRNOG00000026211	Mri1	95	55.874	Rattus_norvegicus
ENSCSAVG00000003107	-	99	57.143	ENSRBIG00000028556	MRI1	94	54.636	Rhinopithecus_bieti
ENSCSAVG00000003107	-	98	57.020	ENSRROG00000031188	MRI1	95	57.593	Rhinopithecus_roxellana
ENSCSAVG00000003107	-	99	41.809	YPR118W	-	99	41.809	Saccharomyces_cerevisiae
ENSCSAVG00000003107	-	98	46.974	ENSSBOG00000029825	-	96	47.126	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003107	-	86	56.721	ENSSBOG00000034840	-	94	57.049	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003107	-	99	56.000	ENSSHAG00000011531	MRI1	98	56.286	Sarcophilus_harrisii
ENSCSAVG00000003107	-	86	62.171	ENSSFOG00015018651	mri1	95	62.013	Scleropages_formosus
ENSCSAVG00000003107	-	99	61.671	ENSSMAG00000004636	mri1	97	61.671	Scophthalmus_maximus
ENSCSAVG00000003107	-	99	61.671	ENSSDUG00000002275	mri1	97	61.671	Seriola_dumerili
ENSCSAVG00000003107	-	99	61.671	ENSSLDG00000012900	mri1	97	61.671	Seriola_lalandi_dorsalis
ENSCSAVG00000003107	-	98	56.734	ENSSARG00000007904	MRI1	96	57.307	Sorex_araneus
ENSCSAVG00000003107	-	98	47.701	ENSSPUG00000002937	MRI1	95	47.701	Sphenodon_punctatus
ENSCSAVG00000003107	-	99	61.383	ENSSPAG00000008235	mri1	97	61.383	Stegastes_partitus
ENSCSAVG00000003107	-	99	57.429	ENSSSCG00000013756	MRI1	88	57.429	Sus_scrofa
ENSCSAVG00000003107	-	98	61.272	ENSTRUG00000010929	mri1	97	61.272	Takifugu_rubripes
ENSCSAVG00000003107	-	98	59.249	ENSTNIG00000014065	mri1	98	58.501	Tetraodon_nigroviridis
ENSCSAVG00000003107	-	79	62.879	ENSTBEG00000008620	MRI1	81	66.225	Tupaia_belangeri
ENSCSAVG00000003107	-	99	56.125	ENSTTRG00000010347	MRI1	96	56.695	Tursiops_truncatus
ENSCSAVG00000003107	-	99	56.857	ENSUAMG00000015405	MRI1	98	57.429	Ursus_americanus
ENSCSAVG00000003107	-	99	55.429	ENSUMAG00000004743	MRI1	98	56.000	Ursus_maritimus
ENSCSAVG00000003107	-	56	76.667	ENSVPAG00000011144	-	59	69.697	Vicugna_pacos
ENSCSAVG00000003107	-	99	57.143	ENSVVUG00000026734	MRI1	89	57.143	Vulpes_vulpes
ENSCSAVG00000003107	-	99	57.345	ENSXETG00000021867	mri1	98	57.345	Xenopus_tropicalis
ENSCSAVG00000003107	-	86	61.056	ENSXCOG00000014431	mri1	90	61.184	Xiphophorus_couchianus
ENSCSAVG00000003107	-	99	60.807	ENSXMAG00000027505	MRI1	97	60.807	Xiphophorus_maculatus