EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000003196 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
5454 bases
Position
chrreftig_30:1340180-1345633
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000005350GTP_EFTUPF00009.274.3e-5211
ENSCSAVP00000005349GTP_EFTUPF00009.274.6e-5211
ENSCSAVP00000005350GTP_EFTU_D2PF03144.251.9e-1411
ENSCSAVP00000005349GTP_EFTU_D2PF03144.252e-1411
ENSCSAVP00000005350GTP_EFTU_D3PF03143.172.4e-4311
ENSCSAVP00000005349GTP_EFTU_D3PF03143.172.4e-4311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000005421-1490-ENSCSAVP00000005350464 (aa)-H2YJ51
ENSCSAVT00000005420-1425-ENSCSAVP00000005349469 (aa)-H2YJ50
Gene Model
Click here to download ENSCSAVG00000003196's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003196's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000003196-9438.063ENSCSAVG00000002297-6838.063
ENSCSAVG00000003196-9876.754ENSCSAVG00000001085-9076.718
ENSCSAVG00000003196-9431.364ENSCSAVG00000010206-8231.279
ENSCSAVG00000003196-9884.835ENSCSAVG00000009663-9884.835
ENSCSAVG00000003196-9978.925ENSCSAVG00000006357-9690.260
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000003196-9877.778ENSAPOG00000004714-9877.778Acanthochromis_polyacanthus
ENSCSAVG00000003196-8980.430ENSACIG00000001219-9780.685Amphilophus_citrinellus
ENSCSAVG00000003196-8779.462ENSAOCG00000022002-9879.462Amphiprion_ocellaris
ENSCSAVG00000003196-10079.957ENSAOCG00000022039-9879.956Amphiprion_ocellaris
ENSCSAVG00000003196-10079.957ENSAPEG00000016361-9879.956Amphiprion_percula
ENSCSAVG00000003196-9881.699ENSATEG00000003244-9581.699Anabas_testudineus
ENSCSAVG00000003196-10080.810ENSACLG00000022560-9881.046Astatotilapia_calliptera
ENSCSAVG00000003196-10076.333WBGene00001168eef-1A.19876.471Caenorhabditis_elegans
ENSCSAVG00000003196-10076.333WBGene00001169eef-1A.29876.471Caenorhabditis_elegans
ENSCSAVG00000003196-9780.263ENSCING00000005126-9780.263Ciona_intestinalis
ENSCSAVG00000003196-9880.303ENSCING00000021478-9780.574Ciona_intestinalis
ENSCSAVG00000003196-9779.341ENSCING00000018894-9679.341Ciona_intestinalis
ENSCSAVG00000003196-9976.874ENSCING00000007703-9676.805Ciona_intestinalis
ENSCSAVG00000003196-8976.722ENSCSEG00000007992-9776.456Cynoglossus_semilaevis
ENSCSAVG00000003196-9879.956ENSCSEG00000008011-9879.956Cynoglossus_semilaevis
ENSCSAVG00000003196-8977.088ENSCSEG00000007972-9876.773Cynoglossus_semilaevis
ENSCSAVG00000003196-9881.046ENSCVAG00000019356-9881.046Cyprinodon_variegatus
ENSCSAVG00000003196-10078.465FBgn0284245eEF1alpha19878.649Drosophila_melanogaster
ENSCSAVG00000003196-9877.124FBgn0000557eEF1alpha29877.124Drosophila_melanogaster
ENSCSAVG00000003196-9874.892ENSEBUG00000015814-9675.785Eptatretus_burgeri
ENSCSAVG00000003196-10081.023ENSFHEG00000015054-9881.046Fundulus_heteroclitus
ENSCSAVG00000003196-9880.828ENSGAFG00000014646-9880.828Gambusia_affinis
ENSCSAVG00000003196-10078.465ENSGACG00000002143-9878.649Gasterosteus_aculeatus
ENSCSAVG00000003196-9880.392ENSGACG00000002182-9880.392Gasterosteus_aculeatus
ENSCSAVG00000003196-5475.781ENSHBUG00000017166-9176.016Haplochromis_burtoni
ENSCSAVG00000003196-9781.678ENSHCOG00000008468-9781.678Hippocampus_comes
ENSCSAVG00000003196-9979.274ENSHCOG00000008489-9879.085Hippocampus_comes
ENSCSAVG00000003196-9879.739ENSLBEG00000002759-9879.739Labrus_bergylta
ENSCSAVG00000003196-9978.632ENSLBEG00000002955-9878.649Labrus_bergylta
ENSCSAVG00000003196-9881.264ENSMAMG00000007715-9881.264Mastacembelus_armatus
ENSCSAVG00000003196-9970.172ENSMMOG00000018160-9384.091Mola_mola
ENSCSAVG00000003196-9879.739ENSMMOG00000001165-9484.444Mola_mola
ENSCSAVG00000003196-9977.991ENSMMOG00000001106-9877.996Mola_mola
ENSCSAVG00000003196-9971.706ENSNBRG00000017346-9771.744Neolamprologus_brichardi
ENSCSAVG00000003196-7677.159ENSONIG00000017760-9877.159Oreochromis_niloticus
ENSCSAVG00000003196-9880.392ENSORLG00000007614eef1a9880.392Oryzias_latipes
ENSCSAVG00000003196-10081.277ENSORLG00015002397-9881.304Oryzias_latipes_hsok
ENSCSAVG00000003196-9880.828ENSOMEG00000018226-9880.828Oryzias_melastigma
ENSCSAVG00000003196-9349.545ENSPMGG00000022427-9760.000Periophthalmus_magnuspinnatus
ENSCSAVG00000003196-9881.699ENSPMGG00000023911-9882.080Periophthalmus_magnuspinnatus
ENSCSAVG00000003196-9880.828ENSPFOG00000003924-9880.196Poecilia_formosa
ENSCSAVG00000003196-9880.828ENSPLAG00000004316-9880.828Poecilia_latipinna
ENSCSAVG00000003196-9880.828ENSPMEG00000001010-9880.828Poecilia_mexicana
ENSCSAVG00000003196-10081.237ENSPREG00000008243-9881.264Poecilia_reticulata
ENSCSAVG00000003196-10080.810ENSPNYG00000007263-9881.046Pundamilia_nyererei
ENSCSAVG00000003196-9674.336YBR118WTEF29874.074Saccharomyces_cerevisiae
ENSCSAVG00000003196-9674.336YPR080WTEF19874.074Saccharomyces_cerevisiae
ENSCSAVG00000003196-9872.917ENSSMAG00000018469-9872.917Scophthalmus_maximus
ENSCSAVG00000003196-5274.390ENSSMAG00000016277-9480.447Scophthalmus_maximus
ENSCSAVG00000003196-9880.392ENSSDUG00000008198-9880.392Seriola_dumerili
ENSCSAVG00000003196-9780.132ENSSPAG00000001710-9780.132Stegastes_partitus
ENSCSAVG00000003196-9879.521ENSTRUG00000005727ef-1a9879.521Takifugu_rubripes
ENSCSAVG00000003196-9977.991ENSTRUG00000005066-9778.022Takifugu_rubripes
ENSCSAVG00000003196-9577.679ENSTNIG00000002617-9277.679Tetraodon_nigroviridis
ENSCSAVG00000003196-9880.174ENSTNIG00000002619-9880.174Tetraodon_nigroviridis
ENSCSAVG00000003196-9880.828ENSXCOG00000001542-9487.640Xiphophorus_couchianus

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