EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003258 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 9256 bases
Position: chrreftig_132:214044-223299
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005450	KH_1	PF00013.29	1.6e-31	1	2
ENSCSAVP00000005450	KH_1	PF00013.29	1.6e-31	2	2
ENSCSAVP00000005448	DUF1897	PF09005.10	7.9e-13	1	2
ENSCSAVP00000005448	DUF1897	PF09005.10	7.9e-13	2	2
ENSCSAVP00000005449	DUF1897	PF09005.10	7.9e-13	1	2
ENSCSAVP00000005449	DUF1897	PF09005.10	7.9e-13	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005520	-	823	-	ENSCSAVP00000005448	129 (aa)	-	H2YJF0
ENSCSAVT00000005521	-	827	-	ENSCSAVP00000005449	129 (aa)	-	H2YJF0
ENSCSAVT00000005522	-	1200	-	ENSCSAVP00000005450	338 (aa)	-	H2YJF1

Gene Model

Click here to download ENSCSAVG00000003258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003258's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003258	-	100	100.000	ENSCSAVG00000003294	-	91	98.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003258	-	73	38.627	WBGene00007534	C12D8.1	85	34.069	Caenorhabditis_elegans
ENSCSAVG00000003258	-	55	84.874	ENSCING00000009628	-	83	84.874	Ciona_intestinalis
ENSCSAVG00000003258	-	54	46.524	FBgn0014870	Psi	67	37.634	Drosophila_melanogaster